prot_A-nodosum_M_contig1053.29.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1053.29.1
Unique Nameprot_A-nodosum_M_contig1053.29.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length401
Homology
BLAST of mRNA_A-nodosum_M_contig1053.29.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 6.580e-78
Identity = 166/401 (41.40%), Postives = 218/401 (54.36%), Query Frame = 0
Query:   57 SHLPLGEIPEDAYINTCSYLTAPELCAVRCLNRQFLETAERHGEDLWGRLCCRDFPSMAR-----AGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFI-----SRGGA-------------------------------GIIGIASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHD-----------------RHLALSTAATGNLGADRACPALXXXXXXXXXXXXXXXXVVRLIRLRPEHEHLRWTFFFAVFRDLMVFESAAQAEALRARRPNGHLFYCSLDQVGEDHDPLILDGEPPLPHIGHWGFRPLHGDIESGSKGNGDGEEDLSGAWARDTGEAVDDSVERLRRTACYARSSLAFVRW 399
            S  PLG IPED  +   S+L A EL ++R  +R FL TA+RH + LWGRL   DFPS+A      A     L  HQQY++NVM RA +E+GNLR+   +R+SL++F       RG A                                +IG+ SD+ ++PDPRIARA+S+KRRAAL +VVV N++V+ +FRRRGL+ GP+NFLP+  L  D                 R +    A T +         L                 VRL+RLRPEHE LRWT  FA+FRDL VFE+  QAE +RAR P+  LFYC+LD  G   +P  + G   +PHI HWGF   HG +     G G+GE  + G   R  GE V D++ER  R AC+ARSSLAF+++
Sbjct:   74 SPFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLHTADRHADVLWGRLNRCDFPSVAAPTDPAAQETNCLSPHQQYVKNVMRRAIDEVGNLRANHRLRESLDSFTWPIDWPRGNATTSGTIYSAISNTFGGGIDGRSSXXXXXXXXXVIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGNVPAGTEDGDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEVVRARVPDRRLFYCALDHPGAQDEPCPIGGRS-MPHISHWGF---HGLLADSGLGGGEGE--MPGVRDR-AGETVGDALERQERIACFARSSLAFLQY 467          
BLAST of mRNA_A-nodosum_M_contig1053.29.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 2.970e-54
Identity = 137/360 (38.06%), Postives = 177/360 (49.17%), Query Frame = 0
Query:   57 SHLPLGEIPEDAYINTCSYLTAPELCAVRCLNRQFLETAERHGEDLWGRLCCRDFPSMARAGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFISRGGAGIIGIASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHD-----------------RHLALSTAATGNLGADRACPALXXXXXXXXXXXXXXXXVVRLIRLRPEHEHLRWTFFFAVFRDLMVFESAAQAEALRARRPNGHLFYCSLDQVGEDHDPLILDGEPPLPHIGHWGFRPLHGDIESGSKGNGDGEEDLSGAWARDTGEAVDDSVERLRRTACYARSSLAFVRW 399
            S  PLG IPED  +   S+L A EL ++R  +R FL+TA+RH + LWGRL   +FPS++   A  G PA Q+              N  S                                       H+RRAAL +VVV N++V+ +FRRRG + GP+NFLP+  L  D                 R + +  A T +         L                 VRL+RLRPEHE LRWT  FA+FRDL VFE+  QAEA+RAR P+  LFYC+LD  G   +P    G   LPHI HWGF   HG +     G G+GE  + G   R  GE V D++ER  RTAC+ARSSLAF+++
Sbjct:   73 SSFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLQTADRHADVLWGRLNRCEFPSVS---APTG-PAAQET-------------NCLSP--------------------------------------HQRRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLAPLLLPLLLPPQRRIGIVPAGTEDGDGREEGANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDEPCPPGGRS-LPHISHWGF---HGVLADSGLGGGEGE--VPGVRDR-AGETVGDALERQERTACFARSSLAFLQY 370          
BLAST of mRNA_A-nodosum_M_contig1053.29.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.800e-46
Identity = 150/443 (33.86%), Postives = 202/443 (45.60%), Query Frame = 0
Query:   43 FPETPLCHEPETAASH----------LPLGEIPEDAYINTCSYLTAPELCAVRCLNRQFLETAERHGEDLWGRLCCRDFPSMARAG-AQIGLPA---------HQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFI---------SR-----GGAG-------------------------------IIGIASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHDRH--------------LALSTAA------TGNLGADR----ACPALXXXXXXXXXXXXXXXXVVRLIRLRPEHEHLRWTFFFAVFRDLMVFESAAQAEALRARRPNGHLFYCSLDQV-GEDH-DPLILDGEPPLPHIGHWGFRPLHGDIESGSKGNGDGEEDLSGAWARDTGEAVDDSVERLRRTACYARSSL 394
            F  +P  H PE                PL ++PED   +  ++L A EL  +R  +++FL+  + HG+ LW  LC  +FPSMA +  A  G+           HQQY+ NVM RA +++ NLRS   +RK L  +          SR      G G                               +IG+ SD+ ++PDPRIARA+S K R  L  VVV N+ V    RR GL+   + FL + AL+ +                 A++TA+      T N G  R    A   L                 VRL++LRP HE LRWT   AVF+DL VFE++ QAE +RAR  N  LFYC+LD+  G+ H  P  L     LPHI HWGF+   G +  G          + G+ +    E VDD+VER  R AC A SSL
Sbjct:  136 FFRSPYAHHPELVQRQQERHPLFDRPFPLDQLPEDVLPSVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCEFPSMASSPTAAAGVREDKHSYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQKSSRTINMTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALR---VLPHISHWGFQQAPGRV--GGXXXXXXXXHVVGSTSFGE-EDVDDAVERQERIACLASSSL 572          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1053.29.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1J4_9PHAE6.580e-7841.40F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK0_ECTSI2.970e-5438.06F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKJ2_ECTSI1.800e-4633.86F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 48..114
IPR036277SMCs flexible hinge superfamilySUPERFAMILY75553Smc hinge domaincoord: 130..308

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1053contigA-nodosum_M_contig1053:195680..198361 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1053.29.1mRNA_A-nodosum_M_contig1053.29.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1053 195479..198453 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1053.29.1 ID=prot_A-nodosum_M_contig1053.29.1|Name=mRNA_A-nodosum_M_contig1053.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=401bp
MGSGGRSYSGNAFGWELGLRSIGRQLLTSSITHHRRPGFETGFPETPLCH
EPETAASHLPLGEIPEDAYINTCSYLTAPELCAVRCLNRQFLETAERHGE
DLWGRLCCRDFPSMARAGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDV
RKSLEAFISRGGAGIIGIASDIASLPDPRIARAVSHKRRAALWSVVVTNE
RVIQEFRRRGLHRGPLNFLPIRALQHDRHLALSTAATGNLGADRACPALP
MAPELPEPPAGFLGFVVRLIRLRPEHEHLRWTFFFAVFRDLMVFESAAQA
EALRARRPNGHLFYCSLDQVGEDHDPLILDGEPPLPHIGHWGFRPLHGDI
ESGSKGNGDGEEDLSGAWARDTGEAVDDSVERLRRTACYARSSLAFVRWR
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR036277SMC_hinge_sf