mRNA_A-nodosum_M_contig1053.29.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1053.29.1
Unique NamemRNA_A-nodosum_M_contig1053.29.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1053.29.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 1.180e-76
Identity = 166/401 (41.40%), Postives = 218/401 (54.36%), Query Frame = 3 
Query:  261 SHLPLGEIPEDAYINTCSYLTAPELCAVRCLNRQFLETAERHGEDLWGRLCCRDFPSMAR-----AGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFI-----SRGGA-------------------------------GIIGIASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHD-----------------RHLALSTAATGNLGADRACPALXXXXXXXXXXXXXXXXVVRLIRLRPEHEHLRWTFFFAVFRDLMVFESAAQAEALRARRPNGHLFYCSLDQVGEDHDPLILDGEPPLPHIGHWGFRPLHGDIESGSKGNGDGEEDLSGAWARDTGEAVDDSVERLRRTACYARSSLAFVRW 1289
            S  PLG IPED  +   S+L A EL ++R  +R FL TA+RH + LWGRL   DFPS+A      A     L  HQQY++NVM RA +E+GNLR+   +R+SL++F       RG A                                +IG+ SD+ ++PDPRIARA+S+KRRAAL +VVV N++V+ +FRRRGL+ GP+NFLP+  L  D                 R +    A T +         L                 VRL+RLRPEHE LRWT  FA+FRDL VFE+  QAE +RAR P+  LFYC+LD  G   +P  + G   +PHI HWGF   HG +     G G+GE  + G   R  GE V D++ER  R AC+ARSSLAF+++
Sbjct:   74 SPFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLHTADRHADVLWGRLNRCDFPSVAAPTDPAAQETNCLSPHQQYVKNVMRRAIDEVGNLRANHRLRESLDSFTWPIDWPRGNATTSGTIYSAISNTFGGGIDGRSSXXXXXXXXXVIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGNVPAGTEDGDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEVVRARVPDRRLFYCALDHPGAQDEPCPIGGRS-MPHISHWGF---HGLLADSGLGGGEGE--MPGVRDR-AGETVGDALERQERIACFARSSLAFLQY 467
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BLAST of mRNA_A-nodosum_M_contig1053.29.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 3.280e-53
Identity = 137/360 (38.06%), Postives = 177/360 (49.17%), Query Frame = 3 
Query:  261 SHLPLGEIPEDAYINTCSYLTAPELCAVRCLNRQFLETAERHGEDLWGRLCCRDFPSMARAGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFISRGGAGIIGIASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHD-----------------RHLALSTAATGNLGADRACPALXXXXXXXXXXXXXXXXVVRLIRLRPEHEHLRWTFFFAVFRDLMVFESAAQAEALRARRPNGHLFYCSLDQVGEDHDPLILDGEPPLPHIGHWGFRPLHGDIESGSKGNGDGEEDLSGAWARDTGEAVDDSVERLRRTACYARSSLAFVRW 1289
            S  PLG IPED  +   S+L A EL ++R  +R FL+TA+RH + LWGRL   +FPS++   A  G PA Q+              N  S                                       H+RRAAL +VVV N++V+ +FRRRG + GP+NFLP+  L  D                 R + +  A T +         L                 VRL+RLRPEHE LRWT  FA+FRDL VFE+  QAEA+RAR P+  LFYC+LD  G   +P    G   LPHI HWGF   HG +     G G+GE  + G   R  GE V D++ER  RTAC+ARSSLAF+++
Sbjct:   73 SSFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLQTADRHADVLWGRLNRCEFPSVS---APTG-PAAQET-------------NCLSP--------------------------------------HQRRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLAPLLLPLLLPPQRRIGIVPAGTEDGDGREEGANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDEPCPPGGRS-LPHISHWGF---HGVLADSGLGGGEGE--VPGVRDR-AGETVGDALERQERTACFARSSLAFLQY 370
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BLAST of mRNA_A-nodosum_M_contig1053.29.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.690e-45
Identity = 150/443 (33.86%), Postives = 202/443 (45.60%), Query Frame = 3 
Query:  219 FPETPLCHEPETAASH----------LPLGEIPEDAYINTCSYLTAPELCAVRCLNRQFLETAERHGEDLWGRLCCRDFPSMARAG-AQIGLPA---------HQQYIRNVMLRAEEELGNLRSTLDVRKSLEAFI---------SR-----GGAG-------------------------------IIGIASDIASLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRRGLHRGPLNFLPIRALQHDRH--------------LALSTAA------TGNLGADR----ACPALXXXXXXXXXXXXXXXXVVRLIRLRPEHEHLRWTFFFAVFRDLMVFESAAQAEALRARRPNGHLFYCSLDQV-GEDH-DPLILDGEPPLPHIGHWGFRPLHGDIESGSKGNGDGEEDLSGAWARDTGEAVDDSVERLRRTACYARSSL 1274
            F  +P  H PE                PL ++PED   +  ++L A EL  +R  +++FL+  + HG+ LW  LC  +FPSMA +  A  G+           HQQY+ NVM RA +++ NLRS   +RK L  +          SR      G G                               +IG+ SD+ ++PDPRIARA+S K R  L  VVV N+ V    RR GL+   + FL + AL+ +                 A++TA+      T N G  R    A   L                 VRL++LRP HE LRWT   AVF+DL VFE++ QAE +RAR  N  LFYC+LD+  G+ H  P  L     LPHI HWGF+   G +  G          + G+ +    E VDD+VER  R AC A SSL
Sbjct:  136 FFRSPYAHHPELVQRQQERHPLFDRPFPLDQLPEDVLPSVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCEFPSMASSPTAAAGVREDKHSYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQKSSRTINMTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALR---VLPHISHWGFQQAPGRV--GGXXXXXXXXHVVGSTSFGE-EDVDDAVERQERIACLASSSL 572
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1053.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1J4_9PHAE1.180e-7641.40F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK0_ECTSI3.280e-5338.06F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKJ2_ECTSI1.690e-4533.86F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1053contigA-nodosum_M_contig1053:195479..198453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008877367.1
PFAMsF-box-like
Model size1496
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.85e-10
EggNOG OGs29SQ8@1|root,2RXED@2759|Eukaryota
Cds size1203
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866434.6545708-UTR-A-nodosum_M_contig1053:195478..1956791680866434.6545708-UTR-A-nodosum_M_contig1053:195478..195679Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1053 195479..195679 -
1680866435.0182505-UTR-A-nodosum_M_contig1053:198361..1984531680866435.0182505-UTR-A-nodosum_M_contig1053:198361..198453Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1053 198362..198453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866434.9904425-CDS-A-nodosum_M_contig1053:195679..1965011680866434.9904425-CDS-A-nodosum_M_contig1053:195679..196501Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1053 195680..196501 -
1680866435.0037565-CDS-A-nodosum_M_contig1053:197980..1983611680866435.0037565-CDS-A-nodosum_M_contig1053:197980..198361Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1053 197981..198361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1053.29.1prot_A-nodosum_M_contig1053.29.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1053 195680..198361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1053.29.1

>prot_A-nodosum_M_contig1053.29.1 ID=prot_A-nodosum_M_contig1053.29.1|Name=mRNA_A-nodosum_M_contig1053.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=401bp
MGSGGRSYSGNAFGWELGLRSIGRQLLTSSITHHRRPGFETGFPETPLCH
EPETAASHLPLGEIPEDAYINTCSYLTAPELCAVRCLNRQFLETAERHGE
DLWGRLCCRDFPSMARAGAQIGLPAHQQYIRNVMLRAEEELGNLRSTLDV
RKSLEAFISRGGAGIIGIASDIASLPDPRIARAVSHKRRAALWSVVVTNE
RVIQEFRRRGLHRGPLNFLPIRALQHDRHLALSTAATGNLGADRACPALP
MAPELPEPPAGFLGFVVRLIRLRPEHEHLRWTFFFAVFRDLMVFESAAQA
EALRARRPNGHLFYCSLDQVGEDHDPLILDGEPPLPHIGHWGFRPLHGDI
ESGSKGNGDGEEDLSGAWARDTGEAVDDSVERLRRTACYARSSLAFVRWR
*
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mRNA from alignment at A-nodosum_M_contig1053:195479..198453-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1053.29.1 ID=mRNA_A-nodosum_M_contig1053.29.1|Name=mRNA_A-nodosum_M_contig1053.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2975bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:195479..198453- (Ascophyllum nodosum dioecious)
CACCATTCTACACATCTGTATATTTACACTCCCAACCGCTCGGCACGTGT
CACCCTAACGCCATATTTGAAGCTCCCACGTCAAATTTTAGTATGGGTTC
TGGCGGTAGGTCATATTCAGGAAATGCCTTTGGCTGGGAGCTGGGCCTTC
GTTCAATCGGACGACAGCTCTTGACGAGCAGCATAACCCATCACCGCCGT
CCTGGTTTCGAAACCGGGTTCCCAGAAACCCCACTGTGTCATGAGCCTGA
AACGGCGGCGAGCCACTTGCCCCTGGGGGAGATTCCCGAGGATGCGTACA
TCAACACGTGTTCATACTTGACCGCGCCCGAGCTATGCGCTGTACGCTGC
CTAAATCGGCAATTCCTCGAGACGGCCGAGCGTCACGGCGAGGATTTATG
GGGCCGTCTGTGTTGCCGTGATTTTCCCTCGATGGCTAGAGCAGGAGCCC
AGATAGGGCTTCCTGCCCACCAGGTGAGAATATCTTCTCTCCCCTCGTAG
GATTTCTGTGAGCGCGGGCTATTTCGTGTACAGCGGCAGTCTCCTGTCTA
CAAAACTGGCGCGATTAGACATCCCATGGGTATCATGACTGTTGAAATTA
AACTGTTGTACCTGGTATATTTCTATTATTGAAGAAAAATAGGAGTACTG
GACACACTCATGCTGTTATGTAGATCCTATGTACGTATGTTTGTACTGGA
TGTGTGTGAGTGTGTGTCTGCTGTCTTCCCATTTATTCTGGACGTCGGGC
TTGTGGACGTACCGTACCTGCCGGGGTCACAAAGGAGGAAGGTCACACAG
AATTTCTCATCCACCTTCCTTCTGCGGTGCTTGCCTCGATTTTTCGCGCG
AAAAGGATTCAGCCGTTCCTTTCCCTTGTCGACCGAATTTTTGTGTAATG
ACGCAGTGAACGAATCAATCATTCTCCACTTGTTGGGCTTTTTTTTTTTT
GTGTGTGTGAGTAAAATCCTAGTTGGTGTGACTGCACCGGGATTCGAACT
CACGTCCCAACGTCAAAAAGCTTCGAGGTTACCAACTGAACCACCGGGGT
GTATGTGTTTATAGGCATCCTGCTCGTGGTCAACTGAACAGAGAAAATGA
ATATTGTCCTGTCCTCGTGCGCGCCTGAGAATTTGGTCTCGCGAGACGGG
TTCAGCCGTTCCATCCCGCGTCAGCCGGATCATTCTCCATACTCAGCCTG
AATCTGGTGCTGACTTACGAGATTCCTCCCGACTTCCGCGGCGGCGTCCA
TTTATTTATTTGAACTGCCATACGCCATCGGGTCAGTCCCGAGTTTATCG
GGTCACGCATTTGCTTACCGATGGCATTTACTGTCGAGAGTCCGCCGGCA
CAGGGCCAGTAGTCATCAAGGTAGTCCCAGTAACGGGTGCTGTCTTGCAT
CACCATGGACCAATTAATGTGCGCCTCTCTTTTCCCACACCCACTATTGT
TTGTTGTTGTTGTTGTTGGTATGAAGTGCGCATGTTGAAAGTATCGGGTA
CTGTAGCTCAAACGGTTAGCCAGTCCTTTATCTGCCTGTAGAGTTCTTTC
TCCCAGCTGCCTTATGGCGAGAAGTGACAATTACACGCCGTTGTACCTCG
TAAGCTGCCTAGCGAATACAAAACAAACCCAATCGACTTACCGATTACGG
CCGATGCTGCTCACGTTTTTCTTTCGCTGAAGACAACCGAGATCGATCGA
TAAAACCATACGAGTACTTCGTATACAGTACATATTATTAATAATACATA
TTTTCACCTTCAAGATGAGTCCCCAATAAAAAAAATCACGTGTGCATAGT
ATCGGGTTTATGCCTTTGTAGACATCTGCGAGTACAGTAGACGATAGCAG
CAGTAGATATTTTCCACCTTATCAATATTGATGCTTTGTATGTATAATAC
AGTATAAGCAACATTTTCAATTGCTTTACTGCCCGCTGCACTTGACTGCC
AGCAATACATCAGGAACGTCATGCTTCGCGCGGAAGAGGAACTCGGCAAC
CTGCGTTCCACGCTCGACGTTCGGAAGAGTCTTGAGGCCTTCATCAGTCG
CGGCGGCGCCGGCATCATCGGAATAGCGAGCGACATAGCCAGCCTTCCTG
ACCCGCGCATCGCCCGCGCCGTGTCCCACAAGCGCCGCGCAGCACTCTGG
TCGGTGGTGGTCACCAACGAACGGGTGATCCAGGAATTCCGCCGCCGCGG
TCTGCACCGGGGACCGCTGAATTTTCTGCCCATTCGGGCGCTCCAGCACG
ACCGCCATCTCGCGCTGTCTACCGCTGCAACGGGCAATCTTGGTGCAGAC
CGCGCTTGCCCCGCGCTGCCCATGGCCCCCGAGCTTCCTGAGCCACCTGC
AGGGTTCCTGGGGTTCGTGGTGCGACTCATACGGCTTCGTCCGGAGCACG
AGCACTTGCGGTGGACTTTCTTCTTTGCAGTCTTCAGAGACCTCATGGTG
TTTGAGTCCGCAGCACAAGCGGAGGCCCTGCGAGCCCGTAGACCCAATGG
GCACCTCTTCTACTGTTCGCTGGACCAAGTCGGGGAAGACCATGACCCGC
TGATCCTCGACGGAGAGCCGCCGTTACCTCACATCGGCCACTGGGGTTTC
CGTCCCTTGCACGGAGACATTGAGTCTGGCAGCAAGGGGAATGGGGATGG
CGAGGAGGATCTAAGCGGTGCTTGGGCACGGGATACAGGCGAAGCGGTTG
ACGATTCCGTCGAGAGGCTTAGGCGAACAGCGTGCTACGCCAGGAGCTCG
CTAGCGTTCGTTCGGTGGCGGTGAATTTCGAACGCAAAAGCGTTGCGCTT
GACCGTTGAAACTGATTATTTTATACCTGTAGCTCCTGACAAGACATCCA
GTAGCCACGCTTATGTGTTTTTGTTGTTGTTCCATCTTTCTAGTACGGCA
GCTGTTTTAGTCACCGACGGTGAACGAGTTATAAATTCGTTCAATTAGCG
TCATATTTTACTCGACAAAGACGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1053:195479..198453-

>mRNA_A-nodosum_M_contig1053.29.1 ID=mRNA_A-nodosum_M_contig1053.29.1|Name=mRNA_A-nodosum_M_contig1053.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1203bp|location=Sequence derived from alignment at A-nodosum_M_contig1053:195479..198453- (Ascophyllum nodosum dioecious)
ATGGGTTCTGGCGGTAGGTCATATTCAGGAAATGCCTTTGGCTGGGAGCT
GGGCCTTCGTTCAATCGGACGACAGCTCTTGACGAGCAGCATAACCCATC
ACCGCCGTCCTGGTTTCGAAACCGGGTTCCCAGAAACCCCACTGTGTCAT
GAGCCTGAAACGGCGGCGAGCCACTTGCCCCTGGGGGAGATTCCCGAGGA
TGCGTACATCAACACGTGTTCATACTTGACCGCGCCCGAGCTATGCGCTG
TACGCTGCCTAAATCGGCAATTCCTCGAGACGGCCGAGCGTCACGGCGAG
GATTTATGGGGCCGTCTGTGTTGCCGTGATTTTCCCTCGATGGCTAGAGC
AGGAGCCCAGATAGGGCTTCCTGCCCACCAGCAATACATCAGGAACGTCA
TGCTTCGCGCGGAAGAGGAACTCGGCAACCTGCGTTCCACGCTCGACGTT
CGGAAGAGTCTTGAGGCCTTCATCAGTCGCGGCGGCGCCGGCATCATCGG
AATAGCGAGCGACATAGCCAGCCTTCCTGACCCGCGCATCGCCCGCGCCG
TGTCCCACAAGCGCCGCGCAGCACTCTGGTCGGTGGTGGTCACCAACGAA
CGGGTGATCCAGGAATTCCGCCGCCGCGGTCTGCACCGGGGACCGCTGAA
TTTTCTGCCCATTCGGGCGCTCCAGCACGACCGCCATCTCGCGCTGTCTA
CCGCTGCAACGGGCAATCTTGGTGCAGACCGCGCTTGCCCCGCGCTGCCC
ATGGCCCCCGAGCTTCCTGAGCCACCTGCAGGGTTCCTGGGGTTCGTGGT
GCGACTCATACGGCTTCGTCCGGAGCACGAGCACTTGCGGTGGACTTTCT
TCTTTGCAGTCTTCAGAGACCTCATGGTGTTTGAGTCCGCAGCACAAGCG
GAGGCCCTGCGAGCCCGTAGACCCAATGGGCACCTCTTCTACTGTTCGCT
GGACCAAGTCGGGGAAGACCATGACCCGCTGATCCTCGACGGAGAGCCGC
CGTTACCTCACATCGGCCACTGGGGTTTCCGTCCCTTGCACGGAGACATT
GAGTCTGGCAGCAAGGGGAATGGGGATGGCGAGGAGGATCTAAGCGGTGC
TTGGGCACGGGATACAGGCGAAGCGGTTGACGATTCCGTCGAGAGGCTTA
GGCGAACAGCGTGCTACGCCAGGAGCTCGCTAGCGTTCGTTCGGTGGCGG
TGA
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