prot_A-nodosum_M_contig1046.5.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1046.5.1
Unique Nameprot_A-nodosum_M_contig1046.5.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length108
Homology
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BLAST of mRNA_A-nodosum_M_contig1046.5.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 9.330e-29
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 0 
Query:    2 AKLKVDEMITDDKFQVFTNPPRASIGRGKKYDAYLAMVSEPYWLSRIQKQISKTKPACRYETVDEFLHDVRRLCANSFVFMRSTSNDLLKKFLRKLEAKEVKNVLTP 108
            A+ +V++MI  D  +V+TN P+ SIG G  Y +YLAMV  P WL  IQ +++  KP C+Y T+DEFLHDVRRLCANSF++ R TSN  +  FLR LE  +VKNVL P
Sbjct:  750 ARTQVEKMIRLDYQKVYTNSPKLSIG-GASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFLHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRP 855
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BLAST of mRNA_A-nodosum_M_contig1046.5.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.360e-28
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 0 
Query:    2 AKLKVDEMITDDKFQVFTNPPRASIGRGKKYDAYLAMVSEPYWLSRIQKQISKTKPACRYETVDEFLHDVRRLCANSFVFMRSTSNDLLKKFLRKLEAKEVKNVLTP 108
            A+ +V++MI  D  +V+TN P+ SIG G  Y +YLAMV  P WL  IQ +++  KP C+Y T+DEF+HDVRRLCANSF++ R TSN  +  FLR LE  +VKNVL P
Sbjct:  345 ARTQVEKMIRLDYQKVYTNSPKLSIG-GASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFVHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRP 450
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1046.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE9.330e-2955.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI2.360e-2854.21Global transcription factor group n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 6..86
e-value: 8.2E-9
score: 35.4
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 18..89
score: 9.518
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 1..107
e-value: 1.0E-13
score: 53.1
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 6..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1046contigA-nodosum_M_contig1046:12298..12907 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1046.5.1mRNA_A-nodosum_M_contig1046.5.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1046 12298..12918 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1046.5.1 ID=prot_A-nodosum_M_contig1046.5.1|Name=mRNA_A-nodosum_M_contig1046.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
MAKLKVDEMITDDKFQVFTNPPRASIGRGKKYDAYLAMVSEPYWLSRIQK
QISKTKPACRYETVDEFLHDVRRLCANSFVFMRSTSNDLLKKFLRKLEAK
EVKNVLTP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf