mRNA_A-nodosum_M_contig1046.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1046.5.1
Unique NamemRNA_A-nodosum_M_contig1046.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1046.5.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.360e-30
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 3 
Query:    3 EWVMAKLKVDEMITDDKFQVFTNPPRASIGRGKKYDAYLAMVSEPYWLSRIQKQISKTKPACRYETVDEFLHDVRRLCANSFVFMRSTSNDLLKKFLRKLEAKEVKNVLTP 335
            EW  A+ +V++MI  D  +V+TN P+ SIG G  Y +YLAMV  P WL  IQ +++  KP C+Y T+DEFLHDVRRLCANSF++ R TSN  +  FLR LE  +VKNVL P
Sbjct:  746 EWYCARTQVEKMIRLDYQKVYTNSPKLSIG-GASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFLHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRP 855
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BLAST of mRNA_A-nodosum_M_contig1046.5.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.430e-30
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 3 
Query:    3 EWVMAKLKVDEMITDDKFQVFTNPPRASIGRGKKYDAYLAMVSEPYWLSRIQKQISKTKPACRYETVDEFLHDVRRLCANSFVFMRSTSNDLLKKFLRKLEAKEVKNVLTP 335
            EW  A+ +V++MI  D  +V+TN P+ SIG G  Y +YLAMV  P WL  IQ +++  KP C+Y T+DEF+HDVRRLCANSF++ R TSN  +  FLR LE  +VKNVL P
Sbjct:  341 EWYCARTQVEKMIRLDYQKVYTNSPKLSIG-GASYTSYLAMVETPIWLREIQTRVAPVKPKCKYRTIDEFVHDVRRLCANSFMWTRETSNVTVLSFLRLLETADVKNVLRP 450
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1046.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE1.360e-3054.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI3.430e-3054.05Global transcription factor group n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1046contigA-nodosum_M_contig1046:12298..12918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size336
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866420.4848948-CDS-A-nodosum_M_contig1046:12297..124421680866420.4848948-CDS-A-nodosum_M_contig1046:12297..12442Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1046 12298..12442 -
1680866420.4947724-CDS-A-nodosum_M_contig1046:12728..129071680866420.4947724-CDS-A-nodosum_M_contig1046:12728..12907Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1046 12729..12907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866420.5076182-UTR-A-nodosum_M_contig1046:12907..129181680866420.5076182-UTR-A-nodosum_M_contig1046:12907..12918Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1046 12908..12918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1046.5.1prot_A-nodosum_M_contig1046.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1046 12298..12907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1046.5.1

>prot_A-nodosum_M_contig1046.5.1 ID=prot_A-nodosum_M_contig1046.5.1|Name=mRNA_A-nodosum_M_contig1046.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
MAKLKVDEMITDDKFQVFTNPPRASIGRGKKYDAYLAMVSEPYWLSRIQK
QISKTKPACRYETVDEFLHDVRRLCANSFVFMRSTSNDLLKKFLRKLEAK
EVKNVLTP
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mRNA from alignment at A-nodosum_M_contig1046:12298..12918-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1046.5.1 ID=mRNA_A-nodosum_M_contig1046.5.1|Name=mRNA_A-nodosum_M_contig1046.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:12298..12918- (Ascophyllum nodosum dioecious)
ATGAATGGGTGATGGCAAAGCTCAAGGTCGACGAAATGATCACCGACGAC
AAGTTCCAAGTTTTCACCAATCCGCCCCGAGCTTCGATTGGCAGAGGCAA
GAAGTACGATGCTTACCTCGCCATGGTGTCCGAGCCTTATTGGCTTTCGA
GGATTCAAAAACAAATCTCGAAAACCAAACCGGCGTGCAGGTGCGTGATA
TTGGCATCGAGGCACTGGCATCGGCATCAGCGGTCGGAGTACAGAGTTCC
CGATTGCCCGAAGTTACAACAAGCCTGCGTCCACAGTTTCATCTCACAAG
ATCTCCCTACAGGAGGCATTTTGCTGTCGGGGGGCGAAATGCCGTCTCTC
ATAAATCACGACAAAATGCTCAAAATACCAGGCCCTTGATTACCGACGCA
TTCTCACTATTGATATCAAAAGCTCGATAAATCGTCATTTCTCCGTCTCT
CCTCGAATCAACTCCCGCTTCTGCAGGTACGAAACCGTGGACGAGTTTCT
CCATGATGTCCGACGGCTGTGCGCCAACTCGTTCGTCTTCATGCGGTCGA
CAAGCAATGACCTGCTGAAGAAGTTCTTGAGGAAACTCGAGGCGAAGGAA
GTGAAGAACGTCCTCACGCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1046:12298..12918-

>mRNA_A-nodosum_M_contig1046.5.1 ID=mRNA_A-nodosum_M_contig1046.5.1|Name=mRNA_A-nodosum_M_contig1046.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig1046:12298..12918- (Ascophyllum nodosum dioecious)
ATGGCAAAGCTCAAGGTCGACGAAATGATCACCGACGACAAGTTCCAAGT
TTTCACCAATCCGCCCCGAGCTTCGATTGGCAGAGGCAAGAAGTACGATG
CTTACCTCGCCATGGTGTCCGAGCCTTATTGGCTTTCGAGGATTCAAAAA
CAAATCTCGAAAACCAAACCGGCGTGCAGGTACGAAACCGTGGACGAGTT
TCTCCATGATGTCCGACGGCTGTGCGCCAACTCGTTCGTCTTCATGCGGT
CGACAAGCAATGACCTGCTGAAGAAGTTCTTGAGGAAACTCGAGGCGAAG
GAAGTGAAGAACGTCCTCACGCCG
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