prot_A-nodosum_M_contig10458.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10458.3.1
Unique Nameprot_A-nodosum_M_contig10458.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length79
Homology
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.750e-44
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 0
Query:    1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 78
            VEVVT+SQ+R  PEW+VQ+QRKG KQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSK CKHKY+VNN
Sbjct:   38 VEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.040e-36
Identity = 54/78 (69.23%), Postives = 70/78 (89.74%), Query Frame = 0
Query:    1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 78
            VE++T+S  RPLP W+ +L+ KG++++ +RATV+E CPKCGHP+MEFYTMQLRSADEGQTVFYECL+K C+HK+SVNN
Sbjct:   38 VELITQSAPRPLPRWVEELENKGIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.120e-26
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 0
Query:    4 VTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 77
            +T SQDRP P+W+ +  +        RATVEE CPKCGHP+MEFYT+QLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   52 ITYSQDRPEPKWVKENVQSQEVTGPSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.260e-26
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 0
Query:    4 VTKSQDRPLPEWIVQ-LQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 77
            VT SQDRP P+W+ Q +Q + V     RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   52 VTFSQDRPEPKWVKQDIQSQNVTGPA-RATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 100 bits (250), Expect = 8.100e-26
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 0
Query:    1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 78
            + VVT S+++P+P+W+   Q     +   RATVEE CPKCG+P+M++YTMQLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   47 LSVVTCSEEKPVPKWLKTEQSVNEVKGPARATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.730e-25
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 0
Query:    4 VTKSQDRPLPEWIVQLQRKGVKQELQ--------RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 77
            VT S+DRP P+W        VK+E+Q        RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   52 VTFSEDRPEPKW--------VKEEIQSQEVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.570e-25
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 0
Query:    3 VVTKSQDRPLPEWIVQLQRKGVKQELQ---RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 78
            V+T+S+D+P P+W   L  + V  E+    RATVEE CPKCG+P+M++YT+QLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   52 VITRSEDKPTPKW---LDAEKVMSEVTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 98.6 bits (244), Expect = 7.190e-25
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 0
Query:    1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 78
            + VVT+S+DRPLP+W+             RATVEE CPKC +P+M++YT+QLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   50 LSVVTQSEDRPLPKWLDAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 96.7 bits (239), Expect = 4.020e-24
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 0
Query:    4 VTKSQDRPLPEWIVQLQRKGVKQELQ---RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 77
            VT S+DRP P+W+   +   V QE+    RATVEE CPKC +P+MEFYTMQLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   52 VTFSEDRPEPKWV---KNAIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A662XQG8_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.910e-24
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 0
Query:    3 VVTKSQDRPLPEWIVQLQRKGVKQELQ---RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 78
            VVT+S+D+PLP+W   L  + V  E+    RATVEE CPKC +P+M++YT+QLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:  173 VVTRSEDKPLPKW---LDSEKVMSEVTGPARATVEETCPKCNNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 246          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL81_ECTSI1.750e-4488.46DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CG05_9STRA1.040e-3669.23DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024TQD9_9STRA2.120e-2666.22DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A6G0WT35_9STRA4.260e-2670.67DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A2D4BKP7_PYTIN8.100e-2661.54DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
A0A485LF44_9STRA1.730e-2564.63DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
M4BZT8_HYAAE3.570e-2562.03DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A0N7L402_PLAHL7.190e-2561.54DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A067CLZ5_SAPPC4.020e-2466.23DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A662XQG8_9STRA6.910e-2463.29DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 35..76
e-value: 5.8E-14
score: 62.4
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 36..74
e-value: 6.7E-17
score: 61.1
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 33..75
score: 13.429884
NoneNo IPR availableGENE3D2.20.25.10coord: 23..76
e-value: 1.5E-17
score: 64.7
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 24..78
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 28..75
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 24..78
IPR034004Pol I subunit A12, C-terminal zinc ribbonCDDcd10507Zn-ribbon_RPA12coord: 29..77
e-value: 9.13607E-29
score: 95.3476

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10458contigA-nodosum_M_contig10458:11254..12026 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10458.3.1mRNA_A-nodosum_M_contig10458.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10458 11254..12026 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10458.3.1 ID=prot_A-nodosum_M_contig10458.3.1|Name=mRNA_A-nodosum_M_contig10458.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=79bp
VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTM
QLRSADEGQTVFYECLSKKCKHKYSVNN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR034004Zn_ribbon_RPA12_C