mRNA_A-nodosum_M_contig10458.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10458.3.1
Unique NamemRNA_A-nodosum_M_contig10458.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.750e-44
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
            VEVVT+SQ+R  PEW+VQ+QRKG KQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSK CKHKY+VNN
Sbjct:   38 VEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.040e-36
Identity = 54/78 (69.23%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
            VE++T+S  RPLP W+ +L+ KG++++ +RATV+E CPKCGHP+MEFYTMQLRSADEGQTVFYECL+K C+HK+SVNN
Sbjct:   38 VELITQSAPRPLPRWVEELENKGIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.120e-26
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   10 VTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 231
            +T SQDRP P+W+ +  +        RATVEE CPKCGHP+MEFYT+QLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   52 ITYSQDRPEPKWVKENVQSQEVTGPSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.260e-26
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   10 VTKSQDRPLPEWIVQ-LQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 231
            VT SQDRP P+W+ Q +Q + V     RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   52 VTFSQDRPEPKWVKQDIQSQNVTGPA-RATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 100 bits (250), Expect = 8.100e-26
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
            + VVT S+++P+P+W+   Q     +   RATVEE CPKCG+P+M++YTMQLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   47 LSVVTCSEEKPVPKWLKTEQSVNEVKGPARATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.730e-25
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   10 VTKSQDRPLPEWIVQLQRKGVKQELQ--------RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 231
            VT S+DRP P+W        VK+E+Q        RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   52 VTFSEDRPEPKW--------VKEEIQSQEVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.570e-25
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    7 VVTKSQDRPLPEWIVQLQRKGVKQELQ---RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
            V+T+S+D+P P+W   L  + V  E+    RATVEE CPKCG+P+M++YT+QLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   52 VITRSEDKPTPKW---LDAEKVMSEVTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 98.6 bits (244), Expect = 7.190e-25
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
            + VVT+S+DRPLP+W+             RATVEE CPKC +P+M++YT+QLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:   50 LSVVTQSEDRPLPKWLDAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 96.7 bits (239), Expect = 4.020e-24
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   10 VTKSQDRPLPEWIVQLQRKGVKQELQ---RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 231
            VT S+DRP P+W+   +   V QE+    RATVEE CPKC +P+MEFYTMQLRSADEGQTVFYEC  KKC H+YSVN
Sbjct:   52 VTFSEDRPEPKWV---KNAIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A662XQG8_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.910e-24
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    7 VVTKSQDRPLPEWIVQLQRKGVKQELQ---RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
            VVT+S+D+PLP+W   L  + V  E+    RATVEE CPKC +P+M++YT+QLRSADEGQTVFYEC  KKC HK+SVNN
Sbjct:  173 VVTRSEDKPLPKW---LDSEKVMSEVTGPARATVEETCPKCNNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 246          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL81_ECTSI1.750e-4488.46DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CG05_9STRA1.040e-3669.23DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024TQD9_9STRA2.120e-2666.22DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A6G0WT35_9STRA4.260e-2670.67DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A2D4BKP7_PYTIN8.100e-2661.54DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
A0A485LF44_9STRA1.730e-2564.63DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
M4BZT8_HYAAE3.570e-2562.03DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A0N7L402_PLAHL7.190e-2561.54DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A067CLZ5_SAPPC4.020e-2466.23DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A662XQG8_9STRA6.910e-2463.29DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10458contigA-nodosum_M_contig10458:11254..12026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LL81
Preferred nameZNRD1
PFAMsRNA_POL_M_15KD,TFIIS_C
Model size237
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03000
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000428,GO:0001085,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0045892,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055029,GO:0060255,GO:0061629,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue2.88e-45
EggNOG OGsCOG1594@1|root,KOG2907@2759|Eukaryota
Descriptiontermination of RNA polymerase I transcription
Cds size237
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866420.0837467-CDS-A-nodosum_M_contig10458:11253..113941680866420.0837467-CDS-A-nodosum_M_contig10458:11253..11394Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10458 11254..11394 -
1680866420.0941389-CDS-A-nodosum_M_contig10458:11930..120261680866420.0941389-CDS-A-nodosum_M_contig10458:11930..12026Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10458 11931..12026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10458.3.1prot_A-nodosum_M_contig10458.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10458 11254..12026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10458.3.1

>prot_A-nodosum_M_contig10458.3.1 ID=prot_A-nodosum_M_contig10458.3.1|Name=mRNA_A-nodosum_M_contig10458.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=79bp
VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTM
QLRSADEGQTVFYECLSKKCKHKYSVNN*
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mRNA from alignment at A-nodosum_M_contig10458:11254..12026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10458.3.1 ID=mRNA_A-nodosum_M_contig10458.3.1|Name=mRNA_A-nodosum_M_contig10458.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=773bp|location=Sequence derived from alignment at A-nodosum_M_contig10458:11254..12026- (Ascophyllum nodosum dioecious)
GTAGAAGTCGTGACCAAGAGTCAGGATCGTCCGTTGCCAGAATGGATTGT TCAGCTGCAGAGAAAGGGGGTGAAGCAGGAGCTGCAGCGGGCAACGGTGA GAAACGTAGAGAGCCCTTTTTGATACATACCCCTGCTAACTCTCCATACG GTTCTCACCATGGAGAGCCCTTTTGGATTCATACCCCCGCTAACTCGCCA TACGTTTCTCACCGTAGAGATCCCTTTTCGATTCATACCCCCGCTAACTC TCCATACGTTTCTCACCGTAGAGAGCCCTTTTTGATTCATACCCCCGCTA ACTCTCCATACGATTTTCACCGTAGAGAGCCCTTTTTCATATCCCTGCTA ACTCTCTAAGAAAGCCTTAAGAGTGCCCGCACTCCTCCACGATTCGATGC CGCTAACAATCTGCGGCGTACTGCACGTTCCAATCTTTCGTGGTCGTGGC AATCAAGCTCCGCACCGCGCGACGTTAAAGCTGTTCCCTCCCGCAGACCT ATGGTACAGCAGTAAAACGGAGCGAGGATTCGCACAACTTTTGGTGGTGT GTGTGTGTTACGACGGCCCGTTTTACTTGTCCCACGCGCTTCGTTTCGCC GTTTTTTTCTTCTTCTGTTTCGGCGGTTGCAGGTGGAGGAGGCCTGTCCA AAATGCGGACACCCGAAGATGGAGTTCTATACCATGCAGCTGCGTTCGGC GGACGAGGGGCAAACCGTTTTCTACGAGTGCTTGTCGAAGAAGTGCAAGC ACAAGTATTCCGTGAACAACTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10458:11254..12026-

>mRNA_A-nodosum_M_contig10458.3.1 ID=mRNA_A-nodosum_M_contig10458.3.1|Name=mRNA_A-nodosum_M_contig10458.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=237bp|location=Sequence derived from alignment at A-nodosum_M_contig10458:11254..12026- (Ascophyllum nodosum dioecious)
GTAGAAGTCGTGACCAAGAGTCAGGATCGTCCGTTGCCAGAATGGATTGT
TCAGCTGCAGAGAAAGGGGGTGAAGCAGGAGCTGCAGCGGGCAACGGTGG
AGGAGGCCTGTCCAAAATGCGGACACCCGAAGATGGAGTTCTATACCATG
CAGCTGCGTTCGGCGGACGAGGGGCAAACCGTTTTCTACGAGTGCTTGTC
GAAGAAGTGCAAGCACAAGTATTCCGTGAACAACTAG
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