mRNA_A-nodosum_M_contig10458.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI) HSP 1 Score: 147 bits (372), Expect = 1.750e-44 Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 1
Query: 1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
VEVVT+SQ+R PEW+VQ+QRKG KQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSK CKHKY+VNN
Sbjct: 38 VEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.040e-36 Identity = 54/78 (69.23%), Postives = 70/78 (89.74%), Query Frame = 1
Query: 1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
VE++T+S RPLP W+ +L+ KG++++ +RATV+E CPKCGHP+MEFYTMQLRSADEGQTVFYECL+K C+HK+SVNN
Sbjct: 38 VELITQSAPRPLPRWVEELENKGIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.120e-26 Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 10 VTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 231
+T SQDRP P+W+ + + RATVEE CPKCGHP+MEFYT+QLRSADEGQTVFYEC KKC H+YSVN
Sbjct: 52 ITYSQDRPEPKWVKENVQSQEVTGPSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA) HSP 1 Score: 101 bits (252), Expect = 4.260e-26 Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 10 VTKSQDRPLPEWIVQ-LQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 231
VT SQDRP P+W+ Q +Q + V RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC KKC H+YSVN
Sbjct: 52 VTFSQDRPEPKWVKQDIQSQNVTGPA-RATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN) HSP 1 Score: 100 bits (250), Expect = 8.100e-26 Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
+ VVT S+++P+P+W+ Q + RATVEE CPKCG+P+M++YTMQLRSADEGQTVFYEC KKC HK+SVNN
Sbjct: 47 LSVVTCSEEKPVPKWLKTEQSVNEVKGPARATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.730e-25 Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 10 VTKSQDRPLPEWIVQLQRKGVKQELQ--------RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 231
VT S+DRP P+W VK+E+Q RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC KKC H+YSVN
Sbjct: 52 VTFSEDRPEPKW--------VKEEIQSQEVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE) HSP 1 Score: 99.4 bits (246), Expect = 3.570e-25 Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 7 VVTKSQDRPLPEWIVQLQRKGVKQELQ---RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
V+T+S+D+P P+W L + V E+ RATVEE CPKCG+P+M++YT+QLRSADEGQTVFYEC KKC HK+SVNN
Sbjct: 52 VITRSEDKPTPKW---LDAEKVMSEVTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL) HSP 1 Score: 98.6 bits (244), Expect = 7.190e-25 Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query: 1 VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
+ VVT+S+DRPLP+W+ RATVEE CPKC +P+M++YT+QLRSADEGQTVFYEC KKC HK+SVNN
Sbjct: 50 LSVVTQSEDRPLPKWLDAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC) HSP 1 Score: 96.7 bits (239), Expect = 4.020e-24 Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 10 VTKSQDRPLPEWIVQLQRKGVKQELQ---RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVN 231
VT S+DRP P+W+ + V QE+ RATVEE CPKC +P+MEFYTMQLRSADEGQTVFYEC KKC H+YSVN
Sbjct: 52 VTFSEDRPEPKWV---KNAIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Match: A0A662XQG8_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG8_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 6.910e-24 Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 7 VVTKSQDRPLPEWIVQLQRKGVKQELQ---RATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKKCKHKYSVNN 234
VVT+S+D+PLP+W L + V E+ RATVEE CPKC +P+M++YT+QLRSADEGQTVFYEC KKC HK+SVNN
Sbjct: 173 VVTRSEDKPLPKW---LDSEKVMSEVTGPARATVEETCPKCNNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 246 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10458.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10458.3.1 >prot_A-nodosum_M_contig10458.3.1 ID=prot_A-nodosum_M_contig10458.3.1|Name=mRNA_A-nodosum_M_contig10458.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=79bp VEVVTKSQDRPLPEWIVQLQRKGVKQELQRATVEEACPKCGHPKMEFYTMback to top mRNA from alignment at A-nodosum_M_contig10458:11254..12026- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10458.3.1 ID=mRNA_A-nodosum_M_contig10458.3.1|Name=mRNA_A-nodosum_M_contig10458.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=773bp|location=Sequence derived from alignment at A-nodosum_M_contig10458:11254..12026- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10458:11254..12026- >mRNA_A-nodosum_M_contig10458.3.1 ID=mRNA_A-nodosum_M_contig10458.3.1|Name=mRNA_A-nodosum_M_contig10458.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=237bp|location=Sequence derived from alignment at A-nodosum_M_contig10458:11254..12026- (Ascophyllum nodosum dioecious)back to top |