prot_A-nodosum_M_contig10320.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10320.3.1
Unique Nameprot_A-nodosum_M_contig10320.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length47
Homology
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BLAST of mRNA_A-nodosum_M_contig10320.3.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.230e-5
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0 
Query:   16 GERPRSALTTWIELQTSVNCYIDSSKDPK 44
            G+   S LTTW+ELQT+VNCY+DSSKDP+
Sbjct:  443 GDDLASVLTTWVELQTTVNCYMDSSKDPR 471
[Close]
BLAST of mRNA_A-nodosum_M_contig10320.3.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 1.680e-5
Identity = 19/24 (79.17%), Postives = 23/24 (95.83%), Query Frame = 0 
Query:   21 SALTTWIELQTSVNCYIDSSKDPK 44
            S LTTW+ELQT+VNCY+DSSKDP+
Sbjct:  447 SVLTTWVELQTTVNCYMDSSKDPR 470
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10320.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ16_9PHAE1.230e-568.97DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D7FNY1_ECTSI1.680e-579.17DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10320contigA-nodosum_M_contig10320:14726..15841 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10320.3.1mRNA_A-nodosum_M_contig10320.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10320 14726..15842 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10320.3.1 ID=prot_A-nodosum_M_contig10320.3.1|Name=mRNA_A-nodosum_M_contig10320.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=47bp
DSRSQRKAQECGEPQGERPRSALTTWIELQTSVNCYIDSSKDPKRQK
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