mRNA_A-nodosum_M_contig10320.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10320.3.1
Unique NamemRNA_A-nodosum_M_contig10320.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10320.3.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.230e-5
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   46 GERPRSALTTWIELQTSVNCYIDSSKDPK 132
            G+   S LTTW+ELQT+VNCY+DSSKDP+
Sbjct:  443 GDDLASVLTTWVELQTTVNCYMDSSKDPR 471
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BLAST of mRNA_A-nodosum_M_contig10320.3.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 1.680e-5
Identity = 19/24 (79.17%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:   61 SALTTWIELQTSVNCYIDSSKDPK 132
            S LTTW+ELQT+VNCY+DSSKDP+
Sbjct:  447 SVLTTWVELQTTVNCYMDSSKDPR 470
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10320.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ16_9PHAE1.230e-568.97DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D7FNY1_ECTSI1.680e-579.17DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10320contigA-nodosum_M_contig10320:14726..15842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNY1
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
Model size143
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02999
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0055044,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons2
Evalue2.75e-06
EggNOG OGsCOG0086@1|root,KOG0262@2759|Eukaryota
EC2.7.7.6
Descriptionnegative regulation of protein localization to nucleolus
Cds size141
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866401.3005867-CDS-A-nodosum_M_contig10320:14725..147881680866401.3005867-CDS-A-nodosum_M_contig10320:14725..14788Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10320 14726..14788 +
1680866401.3124087-CDS-A-nodosum_M_contig10320:15763..158411680866401.3124087-CDS-A-nodosum_M_contig10320:15763..15841Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10320 15764..15841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10320.3.1prot_A-nodosum_M_contig10320.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10320 14726..15841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10320.3.1

>prot_A-nodosum_M_contig10320.3.1 ID=prot_A-nodosum_M_contig10320.3.1|Name=mRNA_A-nodosum_M_contig10320.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=47bp
DSRSQRKAQECGEPQGERPRSALTTWIELQTSVNCYIDSSKDPKRQK
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mRNA from alignment at A-nodosum_M_contig10320:14726..15842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10320.3.1 ID=mRNA_A-nodosum_M_contig10320.3.1|Name=mRNA_A-nodosum_M_contig10320.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1117bp|location=Sequence derived from alignment at A-nodosum_M_contig10320:14726..15842+ (Ascophyllum nodosum dioecious)
GATTCTCGGTCTCAACGAAAAGCTCAGGAATGCGGAGAGCCTCAAGGGGA
AAGACCTCGCTCGGTGGGTATCCTTCGCATATGACATATAGACAAGACCT
CTTTAGTTTTACCGTTTGCGGTCTTGTACTCCACTTCAGGAGTTGGAAAC
AATTCTACGGCGTTTACGCGAATCAGGAGACGTTACATGTCGACAAACGA
ATAAGCGAGCTCTCTTCATTTGTTCGACAAAGACGGGAAACAGTTTTGTC
CCAGCTTACAAGTTGAACTTGAATGTGTTAGGTTTTCTCCGTCAGTGGTC
AGGCCGGGAGATGTCGCGTGATGCAATTTCTTTTACGATTCCTGAAATCA
GTGAGGAACATTTCACGAGCTTTTTAACTCTGATGGCATTCTCTCTCTGG
CGTCGCCAATGTTCCACCATTTTTTTTTCCCATAAAAATACAAAACTTTT
GTCGTTTTTTCACATGGTTCCACGTTTCATCTTTTCTTTTCTTTTCTTTT
GCAAGTGAGAGCTTTAGACACTTAGAAGTTGAACAATAAAAGCTCAAGCG
ACCGATGAAGAGAAAATTTGCCGACTTCTGAGCGCCTCGCGCCGTGAAGC
CAAAAAACAAAGACTATCTACATCATTATGCTGAGGTCGCTAAACAGAAA
ATGCAATCACAGTCGTACTATTCTAGTAACGGCTAATAAGATTAAAGCGC
GAGTAAACAAGGTTCCAAGATTACCCCAGCTGCTGCGTCTTCGCGTTGCA
AATTGACCCATACAATAGCCTCAGTAGCCTTAAGGGCAGTGAAAATGAAA
ACTTTTTTTTTTGTTCTCACCTTGACCATCAATTATTTTCACTCTCTTGT
CCGGCTGATTTGAATTACAAATATTTTCTCGATGAAATGCAATAGGCTCG
CGTAATAGTTTTACAGACGAGCCCCTCAAGGCGAAAACTCCAAACTGACC
ATTTTCCGCCCTTGCTTGTTTTGTATTCCCCTCCCTCCTTGTGGCGTGCG
GAATGTTTTTTTGTCACCTTCGGTCAAGAGTGATACAGGCCCTTACCACG
TGGATTGAGCTGCAGACCTCGGTGAATTGCTACATTGACAGCAGCAAGGA
CCCCAAGCGACAGAAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10320:14726..15842+

>mRNA_A-nodosum_M_contig10320.3.1 ID=mRNA_A-nodosum_M_contig10320.3.1|Name=mRNA_A-nodosum_M_contig10320.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=141bp|location=Sequence derived from alignment at A-nodosum_M_contig10320:14726..15842+ (Ascophyllum nodosum dioecious)
GATTCTCGGTCTCAACGAAAAGCTCAGGAATGCGGAGAGCCTCAAGGGGA
AAGACCTCGCTCGGCCCTTACCACGTGGATTGAGCTGCAGACCTCGGTGA
ATTGCTACATTGACAGCAGCAAGGACCCCAAGCGACAGAAG
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