prot_A-nodosum_M_contig10273.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig10273.1.1
Unique Name	prot_A-nodosum_M_contig10273.1.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	172

Homology

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 2.040e-46
Identity = 89/135 (65.93%), Postives = 97/135 (71.85%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTAS--RTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVNYACRSVISPD Y+GTTEIGIPLRFA ELTYPQPVA WNVE MR+LVENGT VYPGANFVED+ G +  +   S  +  GV A L  +                 KVWRHL DGDCMLVNRQPT
Sbjct:  489 LFRKHMMGKRVNYACRSVISPDPYVGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSSPGQ--------------KVWRHLTDGDCMLVNRQPT 609

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 2.870e-46
Identity = 89/135 (65.93%), Postives = 97/135 (71.85%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTAS--RTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVNYACRSVISPD Y+GTTEIGIPLRFA ELTYPQPVA WNVE MR+LVENGT VYPGANFVED+ G +  +   S  +  GV A L                    KVWRHL+DGDCMLVNRQPT
Sbjct:  490 LFRKHMMGKRVNYACRSVISPDPYLGTTEIGIPLRFAKELTYPQPVADWNVEAMRQLVENGTSVYPGANFVEDSSGRMLHLDRLSDLKRRGVAARLLSIPGQ--------------KVWRHLKDGDCMLVNRQPT 610

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.800e-38
Identity = 79/135 (58.52%), Postives = 91/135 (67.41%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFI--STASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVN++CRSVISPD YIGTTEIGIP RFA  L +PQPVA WNVE +R LVENG D YPGAN++EDA G +  +   +A +  G+ A L                    KVWRHLQD D MLVNRQPT
Sbjct:  400 LFRKHMMGKRVNHSCRSVISPDPYIGTTEIGIPERFAKVLCFPQPVAAWNVEHLRTLVENGADFYPGANYIEDAAGKLINLRRQSAVQRKGMAARLLSEPGQ--------------KVWRHLQDRDAMLVNRQPT 520

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A6A5A090_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A090_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.360e-37
Identity = 76/139 (54.68%), Postives = 89/139 (64.03%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTS------GVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVNYA RSVISPD YI T+EIG+PL+FA  LT PQ V  WNVE MR+LVENG D++PGANFVE+  G    I  + RT       G   +   A    AH    V      +VWRHL  GD +L+NRQPT
Sbjct:   35 LFRKHMMGKRVNYAARSVISPDPYISTSEIGVPLKFAKTLTLPQAVTPWNVEEMRQLVENGPDIHPGANFVENERG--QLIDLSKRTHHQRVAIGKTLLTRSASAHGAHQEHKVK-----RVWRHLHSGDVVLMNRQPT 166

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A2D4BVH8_PYTIN (DNA-directed RNA polymerase subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVH8_PYTIN)

HSP 1 Score: 144 bits (363), Expect = 1.010e-36
Identity = 75/133 (56.39%), Postives = 89/133 (66.92%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVNYA RSVISPD YI T++IG+PLRFA  LTYPQPV  WNVE MR+LV NG DV+PGANFVE   G    I  + RT      +     T +      +   + +VWRHLQ GD +L+NRQPT
Sbjct:  454 LFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESETG--RLIDLSKRTPHQREAISKTLLTRSASAQGSSKNRVKRVWRHLQTGDVVLMNRQPT 584

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A662Y848_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y848_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.360e-36
Identity = 74/133 (55.64%), Postives = 89/133 (66.92%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVNYA RSVISPD YI T++IG+PLRFA  LTYPQPV  WNVE MR+LV NG DV+PGANFVE   G    I  + RT      +     T +      +   + +VWRHL+ GD +L+NRQPT
Sbjct:  223 LFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVMNGPDVHPGANFVESEAG--RLIDLSKRTPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLKTGDVVLMNRQPT 353

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A0N7L4X0_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4X0_PLAHL)

HSP 1 Score: 144 bits (362), Expect = 1.380e-36
Identity = 74/133 (55.64%), Postives = 89/133 (66.92%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVNYA RSVISPD YIGT++IG+PLRFA  LTYPQPV  WNV+ MR+LV NG DV+PGANFVE   G    I  + RT      +     T +      +   + +VWRHL  GD +L+NRQPT
Sbjct:  455 LFRKHMMGKRVNYAARSVISPDPYIGTSQIGVPLRFAKTLTYPQPVTPWNVKEMRQLVINGPDVHPGANFVESENG--RLIDLSKRTPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLMTGDVVLMNRQPT 585

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A8K1FLQ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLQ6_PYTOL)

HSP 1 Score: 143 bits (360), Expect = 2.560e-36
Identity = 73/133 (54.89%), Postives = 88/133 (66.17%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVNYA RSVISPD YI T++IG+PLRFA  LTYPQPV  WNVE MR+LV NG D++PGAN+VE   G    I    RT      +     T +      +   + +VWRHLQ GD +L+NRQPT
Sbjct:  454 LFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVMNGPDIHPGANYVESETG--RLIDLRKRTPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLQTGDVVLMNRQPT 584

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A484E7B9_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7B9_BRELC)

HSP 1 Score: 142 bits (358), Expect = 4.750e-36
Identity = 73/133 (54.89%), Postives = 89/133 (66.92%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVNYA RSVISPD YI T++IG+PLRFA  LTYPQPV  WNVE MR+LV NG D++PGANFVE   G    I  + RT      +     T +      +   + +VWRHL+ GD +L+NRQPT
Sbjct:  465 LFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDMHPGANFVESESG--RLIDLSKRTPHQREAISKTLLTRSASALGTSKNRVKRVWRHLKTGDVVLMNRQPT 595

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BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: K3X8S6_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8S6_GLOUD)

HSP 1 Score: 142 bits (358), Expect = 4.750e-36
Identity = 74/133 (55.64%), Postives = 88/133 (66.17%), Query Frame = 0

Query:    1 MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 133
            +FRKHMMGKRVNYA RSVISPD YI T++IG+PLRFA  LTYPQPV  WNVE MR+LV NG DV+PGANFVE   G    I    RT      +     T +      +   + +VWRHL+ GD +L+NRQPT
Sbjct:  459 LFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESETG--RLIDLKKRTLHQREAISKTLLTRSASAQGTSKNRVKRVWRHLKTGDVVLMNRQPT 589

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FNY1_ECTSI	2.040e-46	65.93	DNA-directed RNA polymerase subunit n=1 Tax=Ectoca...	[more]
A0A6H5KJ16_9PHAE	2.870e-46	65.93	DNA-directed RNA polymerase subunit n=1 Tax=Ectoca...	[more]
A0A836C8M0_9STRA	1.800e-38	58.52	DNA-directed RNA polymerase subunit n=1 Tax=Tribon...	[more]
A0A6A5A090_9STRA	1.360e-37	54.68	DNA-directed RNA polymerase (Fragment) n=1 Tax=Aph...	[more]
A0A2D4BVH8_PYTIN	1.010e-36	56.39	DNA-directed RNA polymerase subunit n=1 Tax=Pythiu...	[more]
A0A662Y848_9STRA	1.360e-36	55.64	DNA-directed RNA polymerase (Fragment) n=2 Tax=Not...	[more]
A0A0N7L4X0_PLAHL	1.380e-36	55.64	DNA-directed RNA polymerase subunit n=1 Tax=Plasmo...	[more]
A0A8K1FLQ6_PYTOL	2.560e-36	54.89	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A484E7B9_BRELC	4.750e-36	54.89	DNA-directed RNA polymerase subunit n=1 Tax=Bremia...	[more]
K3X8S6_GLOUD	4.750e-36	55.64	DNA-directed RNA polymerase subunit n=1 Tax=Globis...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 1..168 e-value: 5.4E-5 score: -96.4
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 8..134 e-value: 7.2E-29 score: 101.1
None	No IPR available	GENE3D	3.30.1490.180	RNA polymerase ii	coord: 41..118 e-value: 1.7E-37 score: 131.1
None	No IPR available	GENE3D	2.40.40.20		coord: 1..134 e-value: 1.7E-37 score: 131.1
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..134
IPR015699	DNA-directed RNA pol I, largest subunit	PANTHER	PTHR19376:SF11	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1	coord: 2..136
IPR045867	DNA-directed RNA polymerase, subunit beta-prime	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 2..136

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig10273	contig	A-nodosum_M_contig10273:870..1912 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig10273.1.1	mRNA_A-nodosum_M_contig10273.1.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig10273 849..2458 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig10273.1.1 ID=prot_A-nodosum_M_contig10273.1.1|Name=mRNA_A-nodosum_M_contig10273.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=172bp
MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWN
VETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFT
LAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPTTDTTQARDHGPPRSRFA
QPQLPDDLYALRQLQYLQRGL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006592	RNA_pol_N
IPR000722	RNA_pol_asu
IPR015699	DNA-dir_RNA_pol1_lsu
IPR045867	DNA-dir_RpoC_beta_prime