mRNA_A-nodosum_M_contig10273.1.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: D7FNY1_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY1_ECTSI) HSP 1 Score: 184 bits (467), Expect = 9.390e-50 Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 2 Query: 413 NRQPTLRKPGIMAHRVRVLRNPSYQTICMHYANCNTYNADFDGEEINYHLPQNELTKAEADL*AFTDDQYLVPTNGRPLRGLIQDHVDAGVKMCSK 700 NRQPTL KPGIMAHRVRVLRNP YQTI MHYANCNTYNADFDG+EIN HLPQNEL KAEA+L AFTD+QYLVPTNG+PLRGLIQDHVDAGVKMCSK Sbjct: 605 NRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQNELAKAEANLLAFTDEQYLVPTNGKPLRGLIQDHVDAGVKMCSK 700
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE) HSP 1 Score: 184 bits (467), Expect = 9.900e-50 Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 2 Query: 413 NRQPTLRKPGIMAHRVRVLRNPSYQTICMHYANCNTYNADFDGEEINYHLPQNELTKAEADL*AFTDDQYLVPTNGRPLRGLIQDHVDAGVKMCSK 700 NRQPTL KPGIMAHRVRVLRNP YQTI MHYANCNTYNADFDG+EIN HLPQNEL KAEA+L AFTD+QYLVPTNG+PLRGLIQDHVDAGVKMCSK Sbjct: 606 NRQPTLHKPGIMAHRVRVLRNPGYQTIRMHYANCNTYNADFDGDEINCHLPQNELAKAEANLLAFTDEQYLVPTNGKPLRGLIQDHVDAGVKMCSK 701
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA) HSP 1 Score: 169 bits (427), Expect = 2.250e-44 Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 2 Query: 413 NRQPTLRKPGIMAHRVRVLRNPSYQTICMHYANCNTYNADFDGEEINYHLPQNELTKAEADL*AFTDDQYLVPTNGRPLRGLIQDHVDAGVKMCSK 700 NRQPTL KPGIMAH R+LRNP+YQTI MHYANCNTYNADFDG+EIN HLPQNE+ +AEA++ AFT++QYLVPT+G+PLRGLIQD VDAGVK+CSK Sbjct: 516 NRQPTLHKPGIMAHHARILRNPTYQTIRMHYANCNTYNADFDGDEINCHLPQNEVARAEANVLAFTNEQYLVPTDGKPLRGLIQDSVDAGVKLCSK 611
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A6A5A090_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A090_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.330e-40 Identity = 81/146 (55.48%), Postives = 96/146 (65.75%), Query Frame = 1 Query: 1 VLEKKEGMFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTS------GVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 420 ++EKKEG+FRKHMMGKRVNYA RSVISPD YI T+EIG+PL+FA LT PQ V WNVE MR+LVENG D++PGANFVE+ G I + RT G + A AH V +VWRHL GD +L+NRQPT Sbjct: 28 LIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSEIGVPLKFAKTLTLPQAVTPWNVEEMRQLVENGPDIHPGANFVENERG--QLIDLSKRTHHQRVAIGKTLLTRSASAHGAHQEHKVK-----RVWRHLHSGDVVLMNRQPT 166
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC) HSP 1 Score: 156 bits (394), Expect = 6.010e-40 Identity = 71/96 (73.96%), Postives = 83/96 (86.46%), Query Frame = 2 Query: 413 NRQPTLRKPGIMAHRVRVLRNPSYQTICMHYANCNTYNADFDGEEINYHLPQNELTKAEADL*AFTDDQYLVPTNGRPLRGLIQDHVDAGVKMCSK 700 NRQPTL KPGIMAHR RVLR+P+ QTI MHYANCNTYNADFDG+E+N H PQ+EL++AEA+ A TD+QYL PTNG+PLRGLIQDHV +GVK+ K Sbjct: 580 NRQPTLHKPGIMAHRARVLRSPAQQTIRMHYANCNTYNADFDGDEMNCHFPQDELSRAEAETIACTDEQYLAPTNGKPLRGLIQDHVGSGVKLTGK 675
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A2D4BVH8_PYTIN (DNA-directed RNA polymerase subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVH8_PYTIN) HSP 1 Score: 155 bits (392), Expect = 1.110e-39 Identity = 81/140 (57.86%), Postives = 96/140 (68.57%), Query Frame = 1 Query: 1 VLEKKEGMFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 420 V+EKKEG+FRKHMMGKRVNYA RSVISPD YI T++IG+PLRFA LTYPQPV WNVE MR+LV NG DV+PGANFVE G I + RT + T + + + +VWRHLQ GD +L+NRQPT Sbjct: 447 VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVINGPDVHPGANFVESETG--RLIDLSKRTPHQREAISKTLLTRSASAQGSSKNRVKRVWRHLQTGDVVLMNRQPT 584
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A7S2VF85_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF85_9STRA) HSP 1 Score: 144 bits (363), Expect = 1.240e-39 Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = 2 Query: 413 NRQPTLRKPGIMAHRVRVLRNPSYQTICMHYANCNTYNADFDGEEINYHLPQNELTKAEADL*AFTDDQYLVPTNGRPLRGLIQDHVDAGVKMCSK 700 NRQPTL KPGIMAHRVRVL NP+ +TI MHYANCNTYNADFDG+E+N H PQ+++ +AEA A TD QY+VPT+G PLRGLIQDHV GVK+ + Sbjct: 2 NRQPTLHKPGIMAHRVRVLHNPTQKTIRMHYANCNTYNADFDGDEMNCHFPQSDVARAEAYYIARTDLQYIVPTDGSPLRGLIQDHVVGGVKLTKR 97
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A662Y848_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y848_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.030e-39 Identity = 79/140 (56.43%), Postives = 96/140 (68.57%), Query Frame = 1 Query: 1 VLEKKEGMFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 420 ++EKKEG+FRKHMMGKRVNYA RSVISPD YI T++IG+PLRFA LTYPQPV WNVE MR+LV NG DV+PGANFVE G I + RT + T + + + +VWRHL+ GD +L+NRQPT Sbjct: 216 IIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVMNGPDVHPGANFVESEAG--RLIDLSKRTPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLKTGDVVLMNRQPT 353
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A0N7L4X0_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4X0_PLAHL) HSP 1 Score: 154 bits (390), Expect = 2.050e-39 Identity = 79/140 (56.43%), Postives = 96/140 (68.57%), Query Frame = 1 Query: 1 VLEKKEGMFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 420 ++EKKEG+FRKHMMGKRVNYA RSVISPD YIGT++IG+PLRFA LTYPQPV WNV+ MR+LV NG DV+PGANFVE G I + RT + T + + + +VWRHL GD +L+NRQPT Sbjct: 448 IIEKKEGLFRKHMMGKRVNYAARSVISPDPYIGTSQIGVPLRFAKTLTYPQPVTPWNVKEMRQLVINGPDVHPGANFVESENG--RLIDLSKRTPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLMTGDVVLMNRQPT 585
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Match: A0A8K1FLQ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLQ6_PYTOL) HSP 1 Score: 154 bits (389), Expect = 2.800e-39 Identity = 79/140 (56.43%), Postives = 95/140 (67.86%), Query Frame = 1 Query: 1 VLEKKEGMFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNVETMRELVENGTDVYPGANFVEDAYGVVSFISTASRTSGVEAVLPDADFTLAHLVAVVTLFVLVKVWRHLQDGDCMLVNRQPT 420 V+EKKEG+FRKHMMGKRVNYA RSVISPD YI T++IG+PLRFA LTYPQPV WNVE MR+LV NG D++PGAN+VE G I RT + T + + + +VWRHLQ GD +L+NRQPT Sbjct: 447 VIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEMRQLVMNGPDIHPGANYVESETG--RLIDLRKRTPHQREAISKTLLTRSASAQGTSKNRVKRVWRHLQTGDVVLMNRQPT 584 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10273.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10273.1.1 >prot_A-nodosum_M_contig10273.1.1 ID=prot_A-nodosum_M_contig10273.1.1|Name=mRNA_A-nodosum_M_contig10273.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=172bp MFRKHMMGKRVNYACRSVISPDSYIGTTEIGIPLRFATELTYPQPVAGWNback to top mRNA from alignment at A-nodosum_M_contig10273:849..2458+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10273.1.1 ID=mRNA_A-nodosum_M_contig10273.1.1|Name=mRNA_A-nodosum_M_contig10273.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1610bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:849..2458+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10273:849..2458+ >mRNA_A-nodosum_M_contig10273.1.1 ID=mRNA_A-nodosum_M_contig10273.1.1|Name=mRNA_A-nodosum_M_contig10273.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:849..2458+ (Ascophyllum nodosum dioecious)back to top |