prot_A-nodosum_M_contig10259.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10259.1.1
Unique Nameprot_A-nodosum_M_contig10259.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length75
Homology
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.210e-28
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            +A+R  + +D+KAV++  G  NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL
Sbjct:   35 YAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 107          
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.270e-28
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 0
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            +A+R  + +D+KAV +  G +NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL
Sbjct:   35 YAERVEKTLDVKAVRSGGGHKNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 107          
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A8J5MG70_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MG70_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.700e-19
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   28 FVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 97          
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.380e-18
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 0
Query:   14 VETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            +E ++  E ELVFDL+GVDAS+ANALRRI+LAEV T+AIE+VY+ MNS +IHDE+LAHRL
Sbjct:   48 IEVMESSEEELVFDLIGVDASVANALRRIMLAEVPTMAIEYVYIEMNSGMIHDEVLAHRL 107          
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT)

HSP 1 Score: 86.7 bits (213), Expect = 1.610e-18
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   24 FVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 93          
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 86.7 bits (213), Expect = 2.210e-18
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   61 FVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 130          
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A8K1FTD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FTD9_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 3.300e-18
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            F ++ ++++ +K     D    E+VFDLVGVDASIANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   30 FVEQLKKQVKVKIQSLTD---EEIVFDLVGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 99          
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A0P1AUD4_PLAHL (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUD4_PLAHL)

HSP 1 Score: 85.1 bits (209), Expect = 6.300e-18
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            F D+++ K+ +K        E+ ++FDL+G+DA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   28 FVDQSKSKVKIKLQRLT---EDSIIFDLIGIDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 97          
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A2D4CAL0_PYTIN (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAL0_PYTIN)

HSP 1 Score: 85.9 bits (211), Expect = 7.110e-18
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 0
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            F ++ ++++ +K     D   +E+VFDL+GVDASIANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:  319 FVEQLKKQVKVKIQSLTD---DEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 388          
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.130e-18
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 0
Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 73
            F D  ++++ +K     D   +E+VFDL+G+DASIANA RRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   26 FVDNFKKQLKVKIQSLTD---DEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRL 95          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF8_ECTSI2.210e-2880.82DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE2.270e-2880.82DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A8J5MG70_9STRA5.700e-1961.64Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A7S2RJI0_9STRA1.380e-1870.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D0NVB2_PHYIT1.610e-1861.64DNA-directed RNA polymerases I and III subunit RPA... [more]
H3GV90_PHYRM2.210e-1861.64DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A8K1FTD9_PYTOL3.300e-1863.01Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AUD4_PLAHL6.300e-1858.90DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A2D4CAL0_PYTIN7.110e-1861.64DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A024TZC9_9STRA8.130e-1860.27DNA-directed RNA polymerases I and III subunit RPA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 26..54
e-value: 1.7E-10
score: 40.5
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 49..73
e-value: 4.7E-26
score: 93.7
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 14..48
e-value: 4.7E-26
score: 93.7
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 14..58
IPR033901DNA-directed RNA polymerases I and III subunit AC40PANTHERPTHR11800:SF13DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1coord: 13..73
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 13..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10259contigA-nodosum_M_contig10259:15..749 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10259.1.1mRNA_A-nodosum_M_contig10259.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10259 15..749 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10259.1.1 ID=prot_A-nodosum_M_contig10259.1.1|Name=mRNA_A-nodosum_M_contig10259.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATV
AIEHVYMFMNSSIIHDEILAHRLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR036643RNApol_insert_sf
IPR036603RBP11-like
IPR033901RNAPI/III_AC40