mRNA_A-nodosum_M_contig10259.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_A-nodosum_M_contig10259.1.1
Unique Name	mRNA_A-nodosum_M_contig10259.1.1
Type	mRNA
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))

Homology

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BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.210e-28
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1

Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            +A+R  + +D+KAV++  G  NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL
Sbjct:   35 YAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 107

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BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.270e-28
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1

Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            +A+R  + +D+KAV +  G +NELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL
Sbjct:   35 YAERVEKTLDVKAVRSGGGHKNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 107

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BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A8J5MG70_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MG70_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.700e-19
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 1

Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   28 FVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 97

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BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.380e-18
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 1

Query:   40 VETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            +E ++  E ELVFDL+GVDAS+ANALRRI+LAEV T+AIE+VY+ MNS +IHDE+LAHRL
Sbjct:   48 IEVMESSEEELVFDLIGVDASVANALRRIMLAEVPTMAIEYVYIEMNSGMIHDEVLAHRL 107

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BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: D0NVB2_PHYIT (DNA-directed RNA polymerases I and III subunit RPAC1 n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB2_PHYIT)

HSP 1 Score: 86.7 bits (213), Expect = 1.610e-18
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 1

Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   24 FVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 93

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BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 86.7 bits (213), Expect = 2.210e-18
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 1

Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++++R++ +K     D   +E+VFDL+GVDA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   61 FVEQSKRQVKVKIQSLTD---DEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 130

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BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A8K1FTD9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FTD9_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 3.300e-18
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1

Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++ ++++ +K     D    E+VFDLVGVDASIANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   30 FVEQLKKQVKVKIQSLTD---EEIVFDLVGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 99

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BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A0P1AUD4_PLAHL (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUD4_PLAHL)

HSP 1 Score: 85.1 bits (209), Expect = 6.300e-18
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1

Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F D+++ K+ +K        E+ ++FDL+G+DA+IANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   28 FVDQSKSKVKIKLQRLT---EDSIIFDLIGIDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 97

[Close]

BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A2D4CAL0_PYTIN (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAL0_PYTIN)

HSP 1 Score: 85.9 bits (211), Expect = 7.110e-18
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 1

Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F ++ ++++ +K     D   +E+VFDL+GVDASIANALRRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:  319 FVEQLKKQVKVKIQSLTD---DEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRL 388

[Close]

BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.130e-18
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1

Query:    1 FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRL 219
            F D  ++++ +K     D   +E+VFDL+G+DASIANA RRILLAEV T+AIEHVY++ NSSII DE+LAHRL
Sbjct:   26 FVDNFKKQLKVKIQSLTD---DEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRL 95

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig10259.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D7FPF8_ECTSI	2.210e-28	80.82	DNA-directed RNA polymerases I and III subunit RPA...	[more]
A0A6H5JLW5_9PHAE	2.270e-28	80.82	DNA-directed RNA polymerases I and III subunit RPA...	[more]
A0A8J5MG70_9STRA	5.700e-19	61.64	Uncharacterized protein n=1 Tax=Phytophthora aleat...	[more]
A0A7S2RJI0_9STRA	1.380e-18	70.00	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
D0NVB2_PHYIT	1.610e-18	61.64	DNA-directed RNA polymerases I and III subunit RPA...	[more]
H3GV90_PHYRM	2.210e-18	61.64	DNA-directed RNA polymerases I and III subunit RPA...	[more]
A0A8K1FTD9_PYTOL	3.300e-18	63.01	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A0P1AUD4_PLAHL	6.300e-18	58.90	DNA-directed RNA polymerases I and III subunit RPA...	[more]
A0A2D4CAL0_PYTIN	7.110e-18	61.64	DNA-directed RNA polymerases I and III subunit RPA...	[more]
A0A024TZC9_9STRA	8.130e-18	60.27	DNA-directed RNA polymerases I and III subunit RPA...	[more]

Pages

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	2880.D7FPF8
Preferred name	POLR1C
PFAMs	RNA_pol_A_bac,RNA_pol_L
Model size	225
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523,RC02795
KEGG ko	ko:K03027,ko:K08059,ko:K13196,ko:K14163,ko:K18715
KEGG TC	1.I.1
KEGG Reaction	R00435,R00441,R00442,R00443,R03661,R05578
KEGG Pathway	ko00230,ko00240,ko00860,ko00970,ko01100,ko01110,ko01120,ko03020,ko04612,ko04623,ko05169,map00230,map00240,map00860,map00970,map01100,map01110,map01120,map03020,map04612,map04623,map05169
KEGG Module	M00121,M00181,M00182,M00359
Hectar predicted targeting category	other localisation
GOs	GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015074,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070893,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons	2
Evalue	3.62e-29
EggNOG OGs	COG0202@1\|root,KOG1521@2759\|Eukaryota
EC	6.1.1.15,6.1.1.17
Description	transcription by RNA polymerase I
Cds size	225
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03021,ko03041

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at A-nodosum_M_contig10259:15..749-
coding sequence from alignment at A-nodosum_M_contig10259:15..749-

protein sequence of mRNA_A-nodosum_M_contig10259.1.1

>prot_A-nodosum_M_contig10259.1.1 ID=prot_A-nodosum_M_contig10259.1.1|Name=mRNA_A-nodosum_M_contig10259.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
FADRARRKIDLKAVETVDGDENELVFDLVGVDASIANALRRILLAEVATV
AIEHVYMFMNSSIIHDEILAHRLD*

mRNA from alignment at A-nodosum_M_contig10259:15..749-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_A-nodosum_M_contig10259.1.1 ID=mRNA_A-nodosum_M_contig10259.1.1|Name=mRNA_A-nodosum_M_contig10259.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at A-nodosum_M_contig10259:15..749- (Ascophyllum nodosum dioecious)
TTCGCGGACCGCGCTAGGAGGAAAATCGATCTCAAGGCGGTGGAGACTGT
CGACGGCGACGAGAATGAGCTGGTGTTCGATCTCGTGGGCGTCGATGCTT
CCATCGCGAACGCCTTGAGACGAATCTTACTCGCCGAGGTGACATGCCGC
CTGCTTTCTCCTACCCCCCCCCGCCTTCGCAGATCCACATTCTCTCAGAG
GCGAGAACGGAGACAGGGAGAAAAAACATTTTCCATGTCTAGCTGACCAC
GAGGAGGGTTGGCTTATCACATGAACACACCATGCTGTCGTGCGGTCCGT
TGGAACCAGCGGTTTGCGCCCTGAGTGCAATCGGTGGAATGCAATCCTAG
AGCTACGCACGAGCTACTTTACATCCAGCTGCTCTCTCTAGTGTACCTTC
ATCCGCTTCGCTCTTTGCTAAATAGTCGTTCTCAACGCTTATATATTCTG
AAAATATCGTACAGGTATCTAATCGTTTGGAAAAGAAATTGTCGGGTACA
AAAGCAAAACTCTTTCTCGGAGTAGGCGCCATATATTTACGAGTACAATC
GTCCAGTCAGCGGGAGGGCAGCCTGATTGGCGATGAAGGGGCGAGCTTGT
TGGCCGCTGTTGTTCATTTTCTCCCTCTGTTTCTTTGCACACACACAGGT
GGCAACGGTTGCCATCGAGCACGTCTACATGTTCATGAACTCGTCGATCA
TCCACGACGAGATCCTTGCGCACCGACTAGATTGA

Coding sequence (CDS) from alignment at A-nodosum_M_contig10259:15..749-

>mRNA_A-nodosum_M_contig10259.1.1 ID=mRNA_A-nodosum_M_contig10259.1.1|Name=mRNA_A-nodosum_M_contig10259.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10259:15..749- (Ascophyllum nodosum dioecious)
TTCGCGGACCGCGCTAGGAGGAAAATCGATCTCAAGGCGGTGGAGACTGT
CGACGGCGACGAGAATGAGCTGGTGTTCGATCTCGTGGGCGTCGATGCTT
CCATCGCGAACGCCTTGAGACGAATCTTACTCGCCGAGGTGGCAACGGTT
GCCATCGAGCACGTCTACATGTTCATGAACTCGTCGATCATCCACGACGA
GATCCTTGCGCACCGACTAGATTGA