prot_A-nodosum_M_contig10061.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10061.1.1
Unique Nameprot_A-nodosum_M_contig10061.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length52
Homology
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.680e-20
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0
Query:    3 PVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 52
            P ID  Y+G DFTCITF PDWKRFHM+GME DTIA+LRKRVYDMAGCM G
Sbjct:  149 PEIDCDYEGPDFTCITFTPDWKRFHMTGMESDTIALLRKRVYDMAGCMGG 198          
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A835YRC0_9STRA (DNA topoisomerase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.370e-15
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query:    2 EPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMT 51
            EPVI + YDG +FTCITFKPDW+RF M+GME+DT A+L+KR +D+AGCM+
Sbjct:  144 EPVI-KDYDGDEFTCITFKPDWRRFGMAGMEDDTEALLQKRAHDIAGCMS 192          
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A3Q2YB92_HIPCM (DNA topoisomerase 2 n=2 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2YB92_HIPCM)

HSP 1 Score: 67.4 bits (163), Expect = 8.600e-12
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 0
Query:    1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 52
            GEP I +S+DG DFTCITF+PD  +F MS +++DT+A++ +R YD+AGC  G
Sbjct:  199 GEPTI-KSFDGEDFTCITFRPDLPKFKMSILDKDTVALMTRRAYDIAGCTKG 249          
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A6G0XU20_9STRA (DNA topoisomerase 2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU20_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.190e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 52
            GEPVI E+YDG +FT ITF PD  +FHMS +  D +A+L KRV D+AGC+ G
Sbjct:  227 GEPVI-EAYDGPNFTHITFSPDLDKFHMSTLTSDMVAVLSKRVVDVAGCLPG 277          
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A6P4YM25_BRABE (DNA topoisomerase 2 n=9 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YM25_BRABE)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-10
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 52
            GEP I + Y G DFTC+TFKPD  +F M  +++DT+A+LR+R YD+AG   G
Sbjct:  225 GEPKITD-YHGSDFTCVTFKPDLPKFKMDRLDDDTVALLRRRAYDVAGSTKG 275          
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A087SN25_AUXPR (DNA topoisomerase 2 n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SN25_AUXPR)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCM 50
            GEP I       ++TCITFKPD +RF M+ +EEDTI + RKRVYDMAG +
Sbjct:  205 GEPQITPCSSSENWTCITFKPDLERFQMAALEEDTITLFRKRVYDMAGVL 254          
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A7S3XY05_HETAK (DNA topoisomerase 2 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY05_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 2.650e-10
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    2 EPVIDESYDGC--DFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGC 49
            +P   E YDG   DFTCITF PD +RFH+  M++D + +L KRVYD+AGC
Sbjct:  161 DPAEVEDYDGDGEDFTCITFTPDLRRFHLDRMDDDFVGLLMKRVYDVAGC 210          
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A316V3A3_9BASI (DNA topoisomerase 2 n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316V3A3_9BASI)

HSP 1 Score: 63.2 bits (152), Expect = 2.680e-10
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAG 48
            G+P I ++    DFTCITFKPD+KRFH+  +++D  A++ KRVYDMAG
Sbjct:  264 GKPKITKATGAKDFTCITFKPDFKRFHLEKIDDDMEALMMKRVYDMAG 311          
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A8J4PR07_9MYCE (DNA topoisomerase 2 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PR07_9MYCE)

HSP 1 Score: 63.2 bits (152), Expect = 2.680e-10
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    2 EPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMT 51
            EPVI       D+TCITF P+ KRF M+ M+ED IA+L KRVYD+AGC T
Sbjct:  271 EPVITTYSGKTDYTCITFYPELKRFGMTHMDEDLIALLTKRVYDVAGCNT 320          
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A7S2G2M9_9STRA (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G2M9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.280e-10
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0
Query:    2 EPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 52
            EPV+  S+ G ++TC+TFKPD  RF M  +++D +A+L KRV D+AGC  G
Sbjct:  218 EPVV-SSHKGSEYTCVTFKPDLARFKMESLDDDAVALLCKRVLDVAGCCVG 267          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFS2_9PHAE4.680e-2080.00DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YRC0_9STRA1.370e-1568.00DNA topoisomerase 2 n=1 Tax=Tribonema minus TaxID=... [more]
A0A3Q2YB92_HIPCM8.600e-1255.77DNA topoisomerase 2 n=2 Tax=Hippocampus comes TaxI... [more]
A0A6G0XU20_9STRA2.190e-1159.62DNA topoisomerase 2 n=1 Tax=Aphanomyces euteiches ... [more]
A0A6P4YM25_BRABE1.050e-1053.85DNA topoisomerase 2 n=9 Tax=Branchiostoma TaxID=77... [more]
A0A087SN25_AUXPR1.430e-1058.00DNA topoisomerase 2 n=3 Tax=Auxenochlorella protot... [more]
A0A7S3XY05_HETAK2.650e-1056.00DNA topoisomerase 2 (Fragment) n=1 Tax=Heterosigma... [more]
A0A316V3A3_9BASI2.680e-1056.25DNA topoisomerase 2 n=1 Tax=Meira miltonrushii Tax... [more]
A0A8J4PR07_9MYCE2.680e-1060.00DNA topoisomerase 2 n=1 Tax=Polysphondylium violac... [more]
A0A7S2G2M9_9STRA6.280e-1050.98DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036890Histidine kinase/HSP90-like ATPase superfamilyGENE3D3.30.565.10coord: 1..52
e-value: 4.9E-10
score: 41.3
IPR036890Histidine kinase/HSP90-like ATPase superfamilySUPERFAMILY55874ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinasecoord: 3..51
NoneNo IPR availablePANTHERPTHR10169DNA TOPOISOMERASE/GYRASEcoord: 2..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10061contigA-nodosum_M_contig10061:729..1105 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10061.1.1mRNA_A-nodosum_M_contig10061.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10061 729..1105 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10061.1.1 ID=prot_A-nodosum_M_contig10061.1.1|Name=mRNA_A-nodosum_M_contig10061.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCM
TG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036890HATPase_C_sf