mRNA_A-nodosum_M_contig10061.1.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 4.680e-20 Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1 Query: 7 PVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 156 P ID Y+G DFTCITF PDWKRFHM+GME DTIA+LRKRVYDMAGCM G Sbjct: 149 PEIDCDYEGPDFTCITFTPDWKRFHMTGMESDTIALLRKRVYDMAGCMGG 198
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A835YRC0_9STRA (DNA topoisomerase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC0_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.370e-15 Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 1 Query: 4 EPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMT 153 EPVI + YDG +FTCITFKPDW+RF M+GME+DT A+L+KR +D+AGCM+ Sbjct: 144 EPVI-KDYDGDEFTCITFKPDWRRFGMAGMEDDTEALLQKRAHDIAGCMS 192
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A3Q2YB92_HIPCM (DNA topoisomerase 2 n=2 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2YB92_HIPCM) HSP 1 Score: 67.4 bits (163), Expect = 8.600e-12 Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 Query: 1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 156 GEP I +S+DG DFTCITF+PD +F MS +++DT+A++ +R YD+AGC G Sbjct: 199 GEPTI-KSFDGEDFTCITFRPDLPKFKMSILDKDTVALMTRRAYDIAGCTKG 249
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A6G0XU20_9STRA (DNA topoisomerase 2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU20_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.190e-11 Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 Query: 1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 156 GEPVI E+YDG +FT ITF PD +FHMS + D +A+L KRV D+AGC+ G Sbjct: 227 GEPVI-EAYDGPNFTHITFSPDLDKFHMSTLTSDMVAVLSKRVVDVAGCLPG 277
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A6P4YM25_BRABE (DNA topoisomerase 2 n=9 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YM25_BRABE) HSP 1 Score: 64.3 bits (155), Expect = 1.050e-10 Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 Query: 1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 156 GEP I + Y G DFTC+TFKPD +F M +++DT+A+LR+R YD+AG G Sbjct: 225 GEPKITD-YHGSDFTCVTFKPDLPKFKMDRLDDDTVALLRRRAYDVAGSTKG 275
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A087SN25_AUXPR (DNA topoisomerase 2 n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SN25_AUXPR) HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10 Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 Query: 1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCM 150 GEP I ++TCITFKPD +RF M+ +EEDTI + RKRVYDMAG + Sbjct: 205 GEPQITPCSSSENWTCITFKPDLERFQMAALEEDTITLFRKRVYDMAGVL 254
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A7S3XY05_HETAK (DNA topoisomerase 2 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY05_HETAK) HSP 1 Score: 63.2 bits (152), Expect = 2.650e-10 Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 Query: 4 EPVIDESYDGC--DFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGC 147 +P E YDG DFTCITF PD +RFH+ M++D + +L KRVYD+AGC Sbjct: 161 DPAEVEDYDGDGEDFTCITFTPDLRRFHLDRMDDDFVGLLMKRVYDVAGC 210
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A316V3A3_9BASI (DNA topoisomerase 2 n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316V3A3_9BASI) HSP 1 Score: 63.2 bits (152), Expect = 2.680e-10 Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 1 GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAG 144 G+P I ++ DFTCITFKPD+KRFH+ +++D A++ KRVYDMAG Sbjct: 264 GKPKITKATGAKDFTCITFKPDFKRFHLEKIDDDMEALMMKRVYDMAG 311
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A8J4PR07_9MYCE (DNA topoisomerase 2 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PR07_9MYCE) HSP 1 Score: 63.2 bits (152), Expect = 2.680e-10 Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1 Query: 4 EPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMT 153 EPVI D+TCITF P+ KRF M+ M+ED IA+L KRVYD+AGC T Sbjct: 271 EPVITTYSGKTDYTCITFYPELKRFGMTHMDEDLIALLTKRVYDVAGCNT 320
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Match: A0A7S2G2M9_9STRA (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G2M9_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 6.280e-10 Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 Query: 4 EPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMTG 156 EPV+ S+ G ++TC+TFKPD RF M +++D +A+L KRV D+AGC G Sbjct: 218 EPVV-SSHKGSEYTCVTFKPDLARFKMESLDDDAVALLCKRVLDVAGCCVG 267 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10061.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10061.1.1 >prot_A-nodosum_M_contig10061.1.1 ID=prot_A-nodosum_M_contig10061.1.1|Name=mRNA_A-nodosum_M_contig10061.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp GEPVIDESYDGCDFTCITFKPDWKRFHMSGMEEDTIAILRKRVYDMAGCMback to top mRNA from alignment at A-nodosum_M_contig10061:729..1105- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10061.1.1 ID=mRNA_A-nodosum_M_contig10061.1.1|Name=mRNA_A-nodosum_M_contig10061.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=377bp|location=Sequence derived from alignment at A-nodosum_M_contig10061:729..1105- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10061:729..1105- >mRNA_A-nodosum_M_contig10061.1.1 ID=mRNA_A-nodosum_M_contig10061.1.1|Name=mRNA_A-nodosum_M_contig10061.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig10061:729..1105- (Ascophyllum nodosum dioecious)back to top |