prot_A-nodosum_M_contig100.8.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig100.8.1
Unique Nameprot_A-nodosum_M_contig100.8.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length184
Homology
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.940e-15
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0
Query:   61 RVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTR 143
            ++PNT+ EAM  PQ   WK A  K++ +++KH V+ LVP++SVL G K++GT++V K K D  FK RLVV G  Q  G    R
Sbjct:  184 KIPNTYDEAMSSPQREEWKGACSKEMDNMRKHDVYNLVPLSSVLKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGR 266          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5KD00_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD00_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.560e-14
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0
Query:   61 RVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTR 143
            ++PNT+ EAM  PQ   W+ A  K++ +L+KH V+ LVP++SVL G K++GT+ V K K D  FK RLVV G  Q  G    R
Sbjct:  332 KIPNTYDEAMSSPQREEWEGACSKEMDNLRKHNVYNLVPLSSVLKGEKILGTKLVFKKKLDGRFKARLVVGGHRQEPGQDYGR 414          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5KQ84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ84_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.020e-13
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0
Query:   62 VPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTR 143
            +PNT+ EAM  PQ   WK A  K++ +L+KH V+ LVP++SVL G K++  ++V K K D  FK RLV  G  Q  G    R
Sbjct:  185 IPNTYDEAMSSPQHEEWKGACSKEMDNLRKHNVYNLVPLSSVLKGEKILAAKFVFKKKLDGRFKARLVAGGHRQEPGQDYGR 266          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5JVR1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.190e-9
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 0
Query:   61 RVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTRD 144
            + P+T+ EAM  PQ  +WK+A D ++ +L KH VFK V I+ V     +  TR+V  +KAD +FK RLV  G  Q  G    R+
Sbjct:  870 KTPSTYTEAMNSPQREQWKSAIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFMIKADCSFKARLVAGGHRQRAGRHFGRN 953          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: UPI00138F77A0 (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00138F77A0)

HSP 1 Score: 59.3 bits (142), Expect = 5.000e-7
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 0
Query:   63 PNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGM 139
            P T++EA+  P + +W+ A + ++ S+  + V+ LV       G KV+  +W+ K+KAD TFKGRLV +G  Q  G+
Sbjct:  194 PATYREAIESPNSDKWRQAMESEMQSMYDNQVWNLVDAPQ---GAKVIECKWIFKLKADDTFKGRLVAKGFRQTHGV 267          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: L8GIM9_ACACA (Integrase core domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIM9_ACACA)

HSP 1 Score: 58.5 bits (140), Expect = 9.520e-7
Identity = 39/138 (28.26%), Postives = 72/138 (52.17%), Query Frame = 0
Query:   58 ESDRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVK--ADST---FKGR-------LVVQGVSQILGMSVTRDLEKWTITIS----QKGDTEDVV--QPYGMEDCNPAYNLG 177
            E+ + PN++K+A+  P AARW+ A  ++  +L ++G + LVP+   L G K +G RW+ KVK  AD +   +K R       + ++ +  +L  +  R+LE   + +         TE++   QP G  +    +++G
Sbjct:  453 EAPKTPNSYKDALASPDAARWQKAMQEEFEALMRNGTYVLVPL---LQGRKPIGARWLYKVKLHADGSIDRYKARWHLLSCRIRIENLRLLLAFANARNLEIHQVDVDTAFLHAKLTEEIYISQPEGFVNKQRPHHVG 587          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 58.2 bits (139), Expect = 1.350e-6
Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 0
Query:   60 DRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADST-----FKGRLVVQGVSQILGM 139
            D VP T+  A+    A  WK A   +I SLKK+  + L  +     G KVVGT+WV K+K DS      +K RLV QG SQ  G+
Sbjct:  768 DDVPKTYSSAVTGVHANLWKNAIQDEIDSLKKNNTWTLSHLPK---GRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGV 849          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A146H2N5_MYCCL (Integrase catalytic domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H2N5_MYCCL)

HSP 1 Score: 56.2 bits (134), Expect = 6.210e-6
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 0
Query:   60 DRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVK--ADST---FKGRLVVQGVSQILGM 139
            D  P T+ EAM  P + R+  A+ ++I +L  +G F+LV +     G KV+G+RWV KVK  AD T   +KGR+V  G  Q  G+
Sbjct:  905 DTEPRTYAEAMRRPDSDRYHQAACEEIEALIANGTFELVKLPE---GRKVIGSRWVFKVKRNADGTIERYKGRVVAMGNHQRPGL 986          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: X1WUQ9_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WUQ9_ACYPI)

HSP 1 Score: 55.5 bits (132), Expect = 1.100e-5
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 0
Query:   60 DRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADST-----FKGRLVVQGVSQILGM 139
            D VP T+  ++    A  WK +   +I SLKK+  + L  +     G KVVGT+WV K+K DS      +K RLV QG SQ  G+
Sbjct:  515 DDVPKTYSSSVTGVYANLWKNSIQDEIDSLKKNNTWTLSHLPK---GRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGV 596          
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: J9LXN4_ACYPI (RNA-directed DNA polymerase n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LXN4_ACYPI)

HSP 1 Score: 55.5 bits (132), Expect = 1.150e-5
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 0
Query:   60 DRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADST-----FKGRLVVQGVSQILGM 139
            D VP T+  ++    A  WK +   +I SLKK+  + L  +     G KVVGT+WV K+K DS      +K RLV QG SQ  G+
Sbjct: 1461 DDVPKTYSSSVTGVYANLWKNSIQDEIDSLKKNNTWTLSHLPK---GRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGV 1542          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KTY2_9PHAE4.940e-1546.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD00_9PHAE1.560e-1446.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQ84_9PHAE5.020e-1345.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVR1_9PHAE1.190e-941.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI00138F77A05.000e-737.66Ty1/Copia family RNAse HI domain-containing protei... [more]
L8GIM9_ACACA9.520e-728.26Integrase core domain containing protein n=1 Tax=A... [more]
J9KJ72_ACYPI1.350e-642.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A146H2N5_MYCCL6.210e-641.18Integrase catalytic domain-containing protein n=1 ... [more]
X1WUQ9_ACYPI1.100e-540.00Integrase catalytic domain-containing protein n=1 ... [more]
J9LXN4_ACYPI1.150e-540.00RNA-directed DNA polymerase n=1 Tax=Acyrthosiphon ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig100contigA-nodosum_M_contig100:127805..128356 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig100.8.1mRNA_A-nodosum_M_contig100.8.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig100 127581..128532 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig100.8.1 ID=prot_A-nodosum_M_contig100.8.1|Name=mRNA_A-nodosum_M_contig100.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=184bp
MALAERFQPSTLHKLRQLGIYTITYTPDTAHQLDAEAVPAEVTYTRTITR
PSCSGGGESDRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPI
TSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTRDLEKWTI
TISQKGDTEDVVQPYGMEDCNPAYNLGVGWNCP*
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