mRNA_A-nodosum_M_contig100.8.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 8.620e-14 Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 3 Query: 357 RVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTR 605 ++PNT+ EAM PQ WK A K++ +++KH V+ LVP++SVL G K++GT++V K K D FK RLVV G Q G R Sbjct: 184 KIPNTYDEAMSSPQREEWKGACSKEMDNMRKHDVYNLVPLSSVLKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGR 266
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5KD00_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD00_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.470e-13 Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 3 Query: 357 RVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTR 605 ++PNT+ EAM PQ W+ A K++ +L+KH V+ LVP++SVL G K++GT+ V K K D FK RLVV G Q G R Sbjct: 332 KIPNTYDEAMSSPQREEWEGACSKEMDNLRKHNVYNLVPLSSVLKGEKILGTKLVFKKKLDGRFKARLVVGGHRQEPGQDYGR 414
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5KQ84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ84_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 7.450e-12 Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 3 Query: 360 VPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTR 605 +PNT+ EAM PQ WK A K++ +L+KH V+ LVP++SVL G K++ ++V K K D FK RLV G Q G R Sbjct: 185 IPNTYDEAMSSPQHEEWKGACSKEMDNLRKHNVYNLVPLSSVLKGEKILAAKFVFKKKLDGRFKARLVAGGHRQEPGQDYGR 266
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A6H5JVR1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR1_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.080e-8 Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 3 Query: 288 VPAEVTYTRTITRPSCSGGGESDRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGMSVTRD 608 V A T T ++ + + + P+T+ EAM PQ +WK+A D ++ +L KH VFK V I+ V + TR+V +KAD +FK RLV G Q G R+ Sbjct: 847 VRAYAYATGTSSKGFLAEANQEIKTPSTYTEAMNSPQREQWKSAIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFMIKADCSFKARLVAGGHRQRAGRHFGRN 953
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI) HSP 1 Score: 63.5 bits (153), Expect = 1.370e-7 Identity = 40/122 (32.79%), Postives = 64/122 (52.46%), Query Frame = 3 Query: 582 ILGMSVTRDLEKWTITISQKGDTEDVVQPYGMEDCNPAYNLGVGWNCP*TSRRINC*TWKKSGATR*SLEPYMYFAQLICYDILYAVNQLARAMPKPAKAHMGAAMHLPCYLVGFIGFSVTY 947 ILG+ +TRD K T++I Q+ E V++ +GMEDCNPA N + N + + + R ++ ++ AQ+ DI+++V L+R +P AH A + YL G I +TY Sbjct: 175 ILGIQITRDRMKKTVSIDQRRYIETVLERFGMEDCNPA-NTPMDVNTKYSRKMSGNDEKNEIFPYREAIGSLLFAAQVTRPDIIFSVILLSRYCEEPKWAHWIATKRIMRYLKGTIDHKLTY 295
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A4S4LS10_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4LS10_9APHY) HSP 1 Score: 63.2 bits (152), Expect = 1.370e-7 Identity = 43/136 (31.62%), Postives = 64/136 (47.06%), Query Frame = 3 Query: 573 VSQILGMSVTRDLEKWTITISQKGDTEDVVQPYGMEDCNPAYN-LGVGWNCP*TSRRINC*TWKKSGATR*SLE--PY-------MYFAQLICYDILYAVNQLARAMPKPAKAHMGAAMHLPCYLVGFIGFSVTYK 950 ++Q+LG+ +TRD K T+++SQ+ T D++ + M DC P L G +++ + A R S++ PY MY A DI V+ LAR P AH A HL YL G + +TY Sbjct: 60 INQLLGVQITRDRSKRTLSLSQRQYTLDILAKFNMADCRPVGTPLDPG-------AKLSTKMSPTTDAERASMKDIPYINAVGALMYLATATRPDIANTVSTLARFSSNPGMAHWNAVKHLMRYLQGTLDMKLTYS 188
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: A0A4S4M1D7_9APHY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1D7_9APHY) HSP 1 Score: 61.2 bits (147), Expect = 1.120e-6 Identity = 42/136 (30.88%), Postives = 63/136 (46.32%), Query Frame = 3 Query: 573 VSQILGMSVTRDLEKWTITISQKGDTEDVVQPYGMEDCNPAYN-LGVGWNCP*TSRRINC*TWKKSGATR*SLE--PY-------MYFAQLICYDILYAVNQLARAMPKPAKAHMGAAMHLPCYLVGFIGFSVTYK 950 ++Q+LG+ +TRD K T+++SQ+ D++ + M DC P L G +++ + A R S++ PY MY A DI V+ LAR P AH A HL YL G + +TY Sbjct: 896 INQLLGVQITRDRSKRTLSLSQRQYXXDILAKFXMADCRPVGTPLDPG-------AKLSTKMSPTTDAERASMKDIPYINAVGALMYLATATRPDIANTVSTLARFSSNPGMAHWNAVKHLMRYLQGTLDMKLTYS 1024
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: UPI00138F77A0 (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00138F77A0) HSP 1 Score: 59.3 bits (142), Expect = 4.180e-6 Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 3 Query: 363 PNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADSTFKGRLVVQGVSQILGM 593 P T++EA+ P + +W+ A + ++ S+ + V+ LV G KV+ +W+ K+KAD TFKGRLV +G Q G+ Sbjct: 194 PATYREAIESPNSDKWRQAMESEMQSMYDNQVWNLVDAPQ---GAKVIECKWIFKLKADDTFKGRLVAKGFRQTHGV 267
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: L8GIM9_ACACA (Integrase core domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIM9_ACACA) HSP 1 Score: 58.2 bits (139), Expect = 1.060e-5 Identity = 33/101 (32.67%), Postives = 58/101 (57.43%), Query Frame = 3 Query: 348 ESDRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVK--ADST---FKGR-------LVVQGVSQILGMSVTRDLE 614 E+ + PN++K+A+ P AARW+ A ++ +L ++G + LVP+ L G K +G RW+ KVK AD + +K R + ++ + +L + R+LE Sbjct: 453 EAPKTPNSYKDALASPDAARWQKAMQEEFEALMRNGTYVLVPL---LQGRKPIGARWLYKVKLHADGSIDRYKARWHLLSCRIRIENLRLLLAFANARNLE 550
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI) HSP 1 Score: 58.2 bits (139), Expect = 1.140e-5 Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 3 Query: 354 DRVPNTFKEAMGLPQAARWKTASDKKIASLKKHGVFKLVPITSVLAGHKVVGTRWVGKVKADST-----FKGRLVVQGVSQILGM 593 D VP T+ A+ A WK A +I SLKK+ + L + G KVVGT+WV K+K DS +K RLV QG SQ G+ Sbjct: 768 DDVPKTYSSAVTGVHANLWKNAIQDEIDSLKKNNTWTLSHLPK---GRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGV 849 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig100.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig100.8.1 >prot_A-nodosum_M_contig100.8.1 ID=prot_A-nodosum_M_contig100.8.1|Name=mRNA_A-nodosum_M_contig100.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=184bp MALAERFQPSTLHKLRQLGIYTITYTPDTAHQLDAEAVPAEVTYTRTITRback to top mRNA from alignment at A-nodosum_M_contig100:127581..128532- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig100.8.1 ID=mRNA_A-nodosum_M_contig100.8.1|Name=mRNA_A-nodosum_M_contig100.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=952bp|location=Sequence derived from alignment at A-nodosum_M_contig100:127581..128532- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig100:127581..128532- >mRNA_A-nodosum_M_contig100.8.1 ID=mRNA_A-nodosum_M_contig100.8.1|Name=mRNA_A-nodosum_M_contig100.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at A-nodosum_M_contig100:127581..128532- (Ascophyllum nodosum dioecious)back to top |