prot_A-nodosum_M_contig1.19.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1.19.2
Unique Nameprot_A-nodosum_M_contig1.19.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length308
Homology
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BLAST of mRNA_A-nodosum_M_contig1.19.2 vs. uniprot
Match: A0A6H5KIS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.780e-12
Identity = 39/83 (46.99%), Postives = 46/83 (55.42%), Query Frame = 0 
Query:  158 EKYPRLSHRIKSNARRCSVCKTMAADVKSYGHPLSDQVPTVACNECIDMLFYDEGHKPLTGEMAGEEPPAAPLGAENSTVSPS 240
            E+YPRLS     N RRC +C T  A   S+GHPLSD+     C EC +ML  D   KPL GE+AG+     P G    T SPS
Sbjct:  316 EEYPRLSFLSNPNCRRCGICLTKTAVKMSFGHPLSDKASLFCCQECFEMLHLDTDQKPLEGELAGDVATTPPPG---DTTSPS 395
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.19.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIS9_9PHAE2.780e-1246.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022042snRNA-activating protein complex, subunit 3PFAMPF12251SNAPC3coord: 156..216
e-value: 5.0E-8
score: 32.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..257
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:323069..324637 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.19.2mRNA_A-nodosum_M_contig1.19.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1 320921..325072 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1.19.2 ID=prot_A-nodosum_M_contig1.19.2|Name=mRNA_A-nodosum_M_contig1.19.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=308bp
MSLDLPEVCVFVPIQTRRSVSDSTAHDPKSSRPRTAHPSRAFSVPPPCPL
RPPFSVLHLLSRAMHHLRYMFVHHCHCSHIFLVSDIRLEPAPATLPSPNA
EPSSVPATGPSADGSSNRVAPNHGDVGRPDAGRVSRSGVEEEGERTGTRP
AASGNNGEKYPRLSHRIKSNARRCSVCKTMAADVKSYGHPLSDQVPTVAC
NECIDMLFYDEGHKPLTGEMAGEEPPAAPLGAENSTVSPSRETPTTSSGS
SAAAITSTPADEPLLRSEDVERDEEGEEEKEGGGEEEGEERGGGLKGWRL
YQRVFTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022042snRNA-activating_su3