mRNA_A-nodosum_M_contig1.19.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1.19.2
Unique NamemRNA_A-nodosum_M_contig1.19.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1.19.2 vs. uniprot
Match: A0A6H5KIS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.220e-11
Identity = 39/83 (46.99%), Postives = 46/83 (55.42%), Query Frame = 3 
Query: 1593 EKYPRLSHRIKSNARRCSVCKTMAADVKSYGHPLSDQVPTVACNECIDMLFYDEGHKPLTGEMAGEEPPAAPLGAENSTVSPS 1841
            E+YPRLS     N RRC +C T  A   S+GHPLSD+     C EC +ML  D   KPL GE+AG+     P G    T SPS
Sbjct:  316 EEYPRLSFLSNPNCRRCGICLTKTAVKMSFGHPLSDKASLFCCQECFEMLHLDTDQKPLEGELAGDVATTPPPG---DTTSPS 395
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BLAST of mRNA_A-nodosum_M_contig1.19.2 vs. uniprot
Match: D7FU78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU78_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 5.800e-10
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 3 
Query: 1593 EKYPRLSHRIKSNARRCSVCKTMAADVKSYGHPLSDQVPTVACNECIDMLFYDEGHKPLTGEMAGEEPPAAPLGAENSTVSPS 1841
            E+YPRLS     + RRC +C T  A   S GHPLSD+     C EC +ML  D   KPL GE+AG+    +P G    T SPS
Sbjct:  883 EEYPRLSFLSNPHCRRCGICLTKTAVKMSVGHPLSDKASLFCCQECFEMLHLDADQKPLEGELAGDVATTSPPG---DTTSPS 962
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1.19.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIS9_9PHAE3.220e-1146.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU78_ECTSI5.800e-1045.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1contigA-nodosum_M_contig1:320921..325072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2480
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionsnRNA-activating protein complex, subunit 3
Ec32 orthologEc-25_003030.1
Cds size924
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1.19.2prot_A-nodosum_M_contig1.19.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1 323069..324637 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866324.6419194-UTR-A-nodosum_M_contig1:320920..3214171680866324.6419194-UTR-A-nodosum_M_contig1:320920..321417Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 320921..321417 +
1680866324.6513493-UTR-A-nodosum_M_contig1:322041..3221041680866324.6513493-UTR-A-nodosum_M_contig1:322041..322104Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 322042..322104 +
1680866324.66751-UTR-A-nodosum_M_contig1:322507..3230681680866324.66751-UTR-A-nodosum_M_contig1:322507..323068Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 322508..323068 +
1680866325.0394332-UTR-A-nodosum_M_contig1:324637..3250721680866325.0394332-UTR-A-nodosum_M_contig1:324637..325072Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1 324638..325072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866324.677916-CDS-A-nodosum_M_contig1:323068..3236501680866324.677916-CDS-A-nodosum_M_contig1:323068..323650Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 323069..323650 +
1680866325.029719-CDS-A-nodosum_M_contig1:324295..3246371680866325.029719-CDS-A-nodosum_M_contig1:324295..324637Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1 324296..324637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1.19.2

>prot_A-nodosum_M_contig1.19.2 ID=prot_A-nodosum_M_contig1.19.2|Name=mRNA_A-nodosum_M_contig1.19.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=308bp
MSLDLPEVCVFVPIQTRRSVSDSTAHDPKSSRPRTAHPSRAFSVPPPCPL
RPPFSVLHLLSRAMHHLRYMFVHHCHCSHIFLVSDIRLEPAPATLPSPNA
EPSSVPATGPSADGSSNRVAPNHGDVGRPDAGRVSRSGVEEEGERTGTRP
AASGNNGEKYPRLSHRIKSNARRCSVCKTMAADVKSYGHPLSDQVPTVAC
NECIDMLFYDEGHKPLTGEMAGEEPPAAPLGAENSTVSPSRETPTTSSGS
SAAAITSTPADEPLLRSEDVERDEEGEEEKEGGGEEEGEERGGGLKGWRL
YQRVFTS*
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mRNA from alignment at A-nodosum_M_contig1:320921..325072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1.19.2 ID=mRNA_A-nodosum_M_contig1.19.2|Name=mRNA_A-nodosum_M_contig1.19.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4152bp|location=Sequence derived from alignment at A-nodosum_M_contig1:320921..325072+ (Ascophyllum nodosum dioecious)
TCAAGGACGTCACCGGACGAGCGGGAACTGGAGGAGGACGACGGGGAGGG
GAGGACGCCGGCATCTTTGCAGCGCGTGAAACGGACCGAGGCCACGCCCA
AGGCTAGGCCTACGGCGAATGCGACACAAGCCAAAGGCGAGGGGCAGGGT
AAAGCTCCTCAAAAAACGAAAACTATAAAGAAGGGAACGGCCTCAGGCGG
TGAACACGAGAGTGACGGGGGAGGGAGTCGGGAAGAGGATGACGAAGAGG
AGCGGGGGGCTCCTTCTAACGACTCTTCGTCAGCGGGGGCAGGATTGGAA
GGGGTCCACGCCGACGGGCAAGCGCAAGTGGATGGAGTGAGGAAGGCGGC
GGGGCCGGGGGCAGCAGGGGGGGGTGCTGGACTGAAGCCGACGGCGACGA
GAAGGCCTAACACCAAGCTGAGATCTACAATGACGGAGGAGAAACGATGT
AATCAAGGAACGAAGATCAAGCATAAGTTGGGCATGGGGGAGTCCGGGTG
AGAGAAGCATGGGTGTTTTTGTAGGGCTTCACATGGCTGCCGAGGCCGGC
GAAATTTTGTTTTCCATCTCTCAGAAGTAGAAGGGCGGGTGGTTGTAAGG
ATGCTTGGTACCGGTTGTAGGGGAAAGCGATTCTGGCTTCCACCGATCCT
GCGTGGGGGGAATGAGCCATTCTGGGAATTGCGGTCGAAGGGCAAAGCTT
AGGTGGGCAGCTTTTTCGATGCTTTCTTTTCTGTAGTTATCGCGGCGAAT
GTGCGTAATCGCGCTCGTCGATCTTGGCGCAGGGCAACTCCTTGCGTGCT
TCGCGCAACTGCTGTACTGTAGCGAGGGGACGAGGCGACGAGTCGGCCCC
GATTGATCTGGCAACGTGCCTGATGCATCTCACAGGGGGCAAAAAACGAC
TCATAAAACGTTGAAAACCTCATCCCAGGAGTACTTGCTCACTCAACTCT
ACACACAAAAGCCTAACCCGAGTGTTACAACGGTTATTCCCACCCCTCAC
ATCCCTCACAATCGAACTCCATTTCCGTTTCGCGTCATGGTGGCGTCTGA
CTGCTTCGGCCAACCGTCGGCAATCCTTCGTTTCCGTGCTGCAACGTGTC
GGTGTCGGGGTTGTCCTTCAGCGGAGAGGTGGTCTGGGCATCGGACGTGA
CCGTGGGGGAGCTCAGGACCGTGGTTGGCGAGAGGCAAGCACCACTCCTA
ACCATTGGCGCGCCCTTCCTATTTTACCTCAGTATTTCCAATTTTCGGCT
GGCTAAATAGCGGGAGATTGGACGAGAGCCGTGTACATTAGTGCCGTACG
AACACACGACAGTTCGGAATAAAGACGAGGAGTTTAGGACATTTTGGGAA
TCTTCGGGAATCGTATGGGGGATTATACGAGGTGGTTGCGAGGCCTACTT
AGTCACTTTGACAGACATGCTTTTTCCTCTTGTGTTTCTGGTCAACGCGG
GACCATAGCTAAGTCCATGTATGAGGAGCATCTGTGTTTCGTAGCCCTGA
CAAGTATTGAGCGAGTAACCCAGTTCTTTCCGCTTGCCTCTTACTTCCTT
GTGTGATCTCCCACTGCTCTTCTTCGTCTACTTCCAGGTGAATAACGGTG
TCTTGTACTTTCCGGATTATGAAGATAATCTACATCATGGTCCTCTCTGT
TCTCGTTTCAATGTTGTAGTGAATTCGTATTTATAGCCTATGTTGTTGTT
GTTGTATGTTTGATGATGTACTGTTTTGTCTTCGCTGTTTTTCTGGTGTC
CCTGCATGGCGATTAATGTAAGTGTACAGTATAACGGTGGGCTTCTCCCC
GATATTGTACTGTTGACCCAATGTTAGTACCATAGGGGAACCCGTTTAAA
TGCCATGAAGAGGTTTTGTATTTGCAGCCTATGATCCCACCTAAACGTTT
TGACATTTTTCCCCCCTGACTGGGGGATGCTCAGGTCTAGGTGCGTTCTG
ATTTTTTCTTTAAACACCTAGAGGTGATGTTGCCCAATGCCTAGAGATGG
AGAAACACGTCGAACTACGCATCCGCGACACCATAAGCCTTGCCACATTC
GAGGAGGGGTGCCTCGATTAAAGGTGCCGTTCAAGTAGACCGCGCGACAT
AACGCGGTATATGCCTACGCCTTTAGCCGATTCGTGCCGACGCTTCGCAT
GTCCCTCGATCTGCCTGAGGTCTGTGTCTTCGTTCCAATCCAGACACGAC
GCTCGGTATCCGATAGCACAGCACACGATCCAAAGTCGAGCAGGCCACGA
ACCGCGCACCCCTCTCGAGCTTTTTCTGTGCCACCCCCCTGTCCCCTACG
CCCTCCCTTCTCCGTTCTGCACCTCCTCTCCCGGGCGATGCATCACCTTA
GGTACATGTTTGTCCACCACTGCCACTGCAGCCACATTTTTCTGGTGTCG
GACATCCGGCTGGAGCCCGCTCCCGCCACCCTTCCGTCTCCGAACGCCGA
GCCCTCCAGCGTCCCGGCGACTGGGCCCAGCGCCGACGGAAGCAGTAACC
GTGTCGCACCTAACCACGGGGACGTTGGGCGGCCGGACGCCGGCAGAGTC
TCCAGAAGCGGCGTCGAAGAGGAGGGGGAAAGGACAGGGACGAGGCCCGC
GGCGAGCGGGAATAACGGGGAGAAGTATCCTCGCCTTTCGCACAGGATAA
AATCTAACGCGAGGCGTTGCAGCGTGTGCAAGACCATGGCCGCGGACGTG
AAGAGCTACGGGCACCCTTTGTCGGACCAGGTAAGCGGGCCGGGTTACGC
TGATACGTTTTTCTCTCTCTCTTGAGGATGGATGCCCCAACACTCTGCCC
TCGTTGATTCATTGGTCGTACTTTTGAATGGGGTTTTGTTCCAGTTGGAC
GGTTGCTGCTCGCACCATTATATAGCTCTGTGCTGGATCTTTGTAACCCC
AGGTCGTGTGTTCCTGTTCGCCCGCAACTTGTTCGATCGTTTCTGACCGA
TGGTTTCCTTTTTTGACAATTTCGTGGGGGGTTTTCGTTTTGTTTTTTGT
CGACGGTACGCCAACCCGAGAACTGGAGAAAATGTCGGCCAACAAGATCA
TTTAGAGGGGCGCCTTTGCAGACAGAACGACGCGTTCCTTCGCTGCTTTT
GAATGCTCCCGCCGCAACAACACCCAAGATCAAAACGCTCTTACAAAGCG
AAACCTCCAAATCAGTTCCCATCGTGAACAAAATGCCCCccctCCCCCCC
CTCTCCCCCCCGCCAAAGGTTACATCTCTCACCCCCACCCACGCGGATCG
CGTGGCTCCTTCTTTCACCACAATTTAAAGTTTTACTCGCCCGGAACGAA
TCGCTTTCTGTATTTATTTTTACAAGCCGCCCAAACCTGTGCGCCGTGAA
TGAAACACACCTCCTGCCACCCCAGGTCCCGACTGTCGCGTGCAACGAGT
GCATCGATATGCTCTTTTACGACGAGGGGCACAAGCCACTCACCGGAGAG
ATGGCCGGGGAAGAACCGCCCGCGGCCCCCCTGGGCGCCGAAAACAGCAC
CGTGTCCCCTTCAAGGGAAACGCCTACCACTTCGAGTGGAAGCTCGGCGG
CGGCGATTACGTCAACCCCAGCAGATGAACCGTTGCTTCGCTCAGAGGAT
GTAGAAAGAGATGAAGAGGGAGAGGAAGAGAAAGAGGGAGGGGGAGAGGA
AGAGGGAGAGGAACGGGGAGGTGGTCTAAAGGGATGGCGGCTTTACCAGC
GCGTGTTCACTTCTTGAACCGGGCGTGCTTTTCTCTTGATCGCCCAAAAC
GCGTACGCAGTAGATTTTCGGGCGATGTCTGATGTCGTATTTTGATCCCG
GTCTACCGGCACACGCTCCCGTTCAAGTTCATCTTGCATGTTGCGCCGCA
ATTGGGACGCCCATTTTGCGCGGTGATTTTGGTGGGTCTCTCTCTGGTTT
GGGCATTACACCTACCTACCTACGATAGCAGCGACGTTGTTGAAGGAACC
TGGTGCATTGCCCCAGAGAAGTTGAGTGTGTGGTATTCTGGTACAAGTTC
CATAACAATAAAGGTTTAGTACAGAACAAATACACCGGATGCCAAAAGAG
TTGAAGAAAAGGGGGTTCTCAACAAATTGAAACGAGGGTGAATCATTCGC
GTTTGTTCCGGAGGAGGGCAAGTAGCCCTCCGAGAAAAGGGAGAGATTGG
TG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1:320921..325072+

>mRNA_A-nodosum_M_contig1.19.2 ID=mRNA_A-nodosum_M_contig1.19.2|Name=mRNA_A-nodosum_M_contig1.19.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at A-nodosum_M_contig1:320921..325072+ (Ascophyllum nodosum dioecious)
ATGTCCCTCGATCTGCCTGAGGTCTGTGTCTTCGTTCCAATCCAGACACG
ACGCTCGGTATCCGATAGCACAGCACACGATCCAAAGTCGAGCAGGCCAC
GAACCGCGCACCCCTCTCGAGCTTTTTCTGTGCCACCCCCCTGTCCCCTA
CGCCCTCCCTTCTCCGTTCTGCACCTCCTCTCCCGGGCGATGCATCACCT
TAGGTACATGTTTGTCCACCACTGCCACTGCAGCCACATTTTTCTGGTGT
CGGACATCCGGCTGGAGCCCGCTCCCGCCACCCTTCCGTCTCCGAACGCC
GAGCCCTCCAGCGTCCCGGCGACTGGGCCCAGCGCCGACGGAAGCAGTAA
CCGTGTCGCACCTAACCACGGGGACGTTGGGCGGCCGGACGCCGGCAGAG
TCTCCAGAAGCGGCGTCGAAGAGGAGGGGGAAAGGACAGGGACGAGGCCC
GCGGCGAGCGGGAATAACGGGGAGAAGTATCCTCGCCTTTCGCACAGGAT
AAAATCTAACGCGAGGCGTTGCAGCGTGTGCAAGACCATGGCCGCGGACG
TGAAGAGCTACGGGCACCCTTTGTCGGACCAGGTCCCGACTGTCGCGTGC
AACGAGTGCATCGATATGCTCTTTTACGACGAGGGGCACAAGCCACTCAC
CGGAGAGATGGCCGGGGAAGAACCGCCCGCGGCCCCCCTGGGCGCCGAAA
ACAGCACCGTGTCCCCTTCAAGGGAAACGCCTACCACTTCGAGTGGAAGC
TCGGCGGCGGCGATTACGTCAACCCCAGCAGATGAACCGTTGCTTCGCTC
AGAGGATGTAGAAAGAGATGAAGAGGGAGAGGAAGAGAAAGAGGGAGGGG
GAGAGGAAGAGGGAGAGGAACGGGGAGGTGGTCTAAAGGGATGGCGGCTT
TACCAGCGCGTGTTCACTTCTTGA
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