mRNA_A-nodosum_M_contig9853.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9853.1.1
Unique NamemRNA_A-nodosum_M_contig9853.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.520e-78
Identity = 117/162 (72.22%), Postives = 137/162 (84.57%), Query Frame = 1
Query:    7 VVGNMQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIFTLITKTAARV 492
            VVGNMQEEI KA LPIIHY +DLW C+VSGRK+LG HV YVDS+F+L+HAL+ VKHYAPS+E+Q  EKAS ILFTIF+ATL EYGI ++DLAGGTTDSG DVKAMCVN LL LH + WDWCDCHLA K+AE+ FGTSADPQ+SKN  AR +  L+ KTAA++
Sbjct:  205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAPSTEIQGTEKASEILFTIFRATLAEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWWDWCDCHLADKSAENTFGTSADPQQSKNKIARDVIKLVIKTAAKI 366          
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 2.670e-64
Identity = 104/164 (63.41%), Postives = 126/164 (76.83%), Query Frame = 1
Query:    1 QAVVGNMQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIFTLITKTAARV 492
            +AVVGNM  EI++A LPI+HY +DLW C+++G K++  HV YV+S+  LQH LL VKHYAPS+ VQ   KAS ILF +F + LRE+G+ I+DLAGGTTDSG DVKAMCVNFLLA H   WDWC CHLA +AAE AFGTSADPQK KN  AR +  L+ K AA+V
Sbjct:  222 KAVVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHYAPSAAVQATGKASEILFNVFNSVLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKGSWDWCVCHLADRAAEQAFGTSADPQKPKNKDARGVVQLVIKAAAKV 385          
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.080e-44
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = 1
Query:   19 MQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSA 420
            M  EI++A LPI+HY +DLW C+++G K++  HV YV+S+F LQ+ALL VKHYAPS+ VQ  +KAS ILF +FK+ LRE+G+ I+DLAGGTTDSG DVKAMCVNFLLA H V  +    HL    AE  +  +A
Sbjct:    1 MLTEIERAPLPIVHYGIDLWQCKITGLKYIDGHVCYVNSNFELQYALLSVKHYAPSAAVQVTDKASEILFIVFKSVLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKVSQEIERYHLLYITAEEGYERAA 134          
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 6.680e-44
Identity = 76/109 (69.72%), Postives = 90/109 (82.57%), Query Frame = 1
Query:  166 VKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIFTLITKTAARV 492
            VKHYAPS+ VQ  EKASG+LFT+F++ L E+GI ++DLAGGTTDSG D+KAMC NFLLA H+V WDWC CHLA +AAE AFGTSADPQKSKN  AR + +LI K AA+V
Sbjct:   82 VKHYAPSAAVQASEKASGVLFTVFRSLLAEFGIKLSDLAGGTTDSGSDIKAMCTNFLLAQHNVYWDWCVCHLADRAAEAAFGTSADPQKSKNKDARQVVSLIIKAAAKV 190          
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 8.380e-43
Identity = 77/148 (52.03%), Postives = 101/148 (68.24%), Query Frame = 1
Query:   19 MQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIF 462
            M EE++ A LPI+H+ +D+WA + SGRKFLG HV YV ++F L+  LL +K Y PS +   + KA+ +L  I +A L E+G   +DLA GTTDSG DVK++ VN L   + V W+WC CHL  KAAE AFGT  DPQKSKNP A ++ 
Sbjct:    1 MVEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLSIKRYRPSQDALGEAKAAEVLLEILEAILHEFGRRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNML 148          
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 5.030e-39
Identity = 72/154 (46.75%), Postives = 99/154 (64.29%), Query Frame = 1
Query:    1 QAVVGNMQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIF 462
            +AV+G+M  E++ A LPI+H+ +D+W  + SGRKFLG H+ YV ++F L+ AL+  K             A+ +L  I ++ L E+G+  +DLA GTTDSG DVK++ VN L   + V W+WC CHL  KAAE AFGT  DPQKSKNP  R + 
Sbjct:  165 KAVLGDMLVEVRSAPLPILHHMIDIWTDKPSGRKFLGVHLFYVTANFELKQALISAK-------------AAEVLLKILESVLHEFGLRASDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCCCHLMVKAAEDAFGTHPDPQKSKNPEGRKML 305          
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: G4YIY2_PHYSP (Uncharacterized protein (Fragment) n=3 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIY2_PHYSP)

HSP 1 Score: 92.4 bits (228), Expect = 4.160e-19
Identity = 50/141 (35.46%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   70 DLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIFTLITKTAARV 492
            DLW  + SG KFLG  +++V + F L   LLG +H+ P    +D          I +  L ++G+++AD  G TTD GPDV+ M  + L+    + W+WC  HL   A + AFG +++  KSKNP    +   +T+T  +V
Sbjct:  131 DLWKAKSSGTKFLGLRLYFVTADFKLVSVLLGTRHFQPLYGERDGGIRGPFKRWIIQ-NLADFGLTVADFFGATTDGGPDVQHMMTSNLI----ISWEWCMPHLTNAATKAAFGMTSNVGKSKNPEMLQLLKKVTQTVYQV 266          
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: A0A6A4ARC5_9STRA (Uncharacterized protein (Fragment) n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4ARC5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.150e-19
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   70 DLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIFTLITKTAARV 492
            D W  + SG KFLG  +++V + F L   LLG +H+ P    +D          I +  L ++G+++AD  G TTD GPDV+ M  + L+    + W+WC  HL   A + AFG +++  KSKNP    +   +T+T  +V
Sbjct:   63 DFWKAKSSGTKFLGLRLYFVTADFKLVSVLLGTRHFQPLYGERDGGIRGPFKRWIIQI-LADFGLTVADFFGSTTDGGPDVQHMMTSNLM----LSWEWCMPHLTNAATKAAFGMTSNVAKSKNPEMLQLLKKVTRTVYQV 198          
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: A0A6A3H0H3_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3H0H3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.440e-18
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   70 DLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIFTLITKTAARV 492
            D W  + SG KFLG  +++V + F L   LLG +H+ P    +D          I +  L ++G+++AD  G TTD GPDV+ M  + L+    + W+WC  HL   A + AFG +++  KSKNP    +   +T+T  +V
Sbjct:   63 DFWKAKSSGTKFLGLRLYFVTADFKLVSVLLGTRHFQPLYGERDGGIRGPFKRWIIQI-LADFGLTVADFFGATTDGGPDVQHMMTSNLM----LSWEWCMPHLTNAATKAAFGMTSNVAKSKNPEMLQLLKKVTRTVYQV 198          
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Match: A0A6A3RTL3_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3RTL3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.420e-16
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = 1
Query:   70 DLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIFTLITKT 480
            D W  + SG KFLG  +++V + F L   LLG +H+ P    +D          I +  L ++G+++AD  G TTD GPDV  M  + L+    + W+W   HL   A + AFG +++  KSKNP    +   +T+T
Sbjct:  315 DFWKAKSSGTKFLGLRLYFVTADFKLVSVLLGTRHFQPLYGERDGGIRGPFKRWIIQI-LADFGLTVADFFGATTDGGPDVMHMMTSNLM----LSWEWSMPHLTNAATKAAFGMTSNVAKSKNPEMLQLLKKVTRT 446          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9853.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JYQ2_9PHAE1.520e-7872.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE2.670e-6463.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN28_9PHAE3.080e-4457.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE6.680e-4469.72Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE8.380e-4352.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS21_9PHAE5.030e-3946.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
G4YIY2_PHYSP4.160e-1935.46Uncharacterized protein (Fragment) n=3 Tax=Phytoph... [more]
A0A6A4ARC5_9STRA8.150e-1934.75Uncharacterized protein (Fragment) n=5 Tax=Phytoph... [more]
A0A6A3H0H3_9STRA2.440e-1834.75Uncharacterized protein (Fragment) n=4 Tax=Phytoph... [more]
A0A6A3RTL3_9STRA4.420e-1634.31Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9853contigA-nodosum_M_contig9853:7250..8031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3L2
PFAMsDimer_Tnp_hAT
Model size493
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.74e-15
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870520.1221092-UTR-A-nodosum_M_contig9853:7249..72671680870520.1221092-UTR-A-nodosum_M_contig9853:7249..7267Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9853 7250..7267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870520.1422484-CDS-A-nodosum_M_contig9853:7267..74141680870520.1422484-CDS-A-nodosum_M_contig9853:7267..7414Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9853 7268..7414 +
1680870520.1525543-CDS-A-nodosum_M_contig9853:7704..80311680870520.1525543-CDS-A-nodosum_M_contig9853:7704..8031Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9853 7705..8031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9853.1.1prot_A-nodosum_M_contig9853.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9853 7268..8031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9853.1.1

>prot_A-nodosum_M_contig9853.1.1 ID=prot_A-nodosum_M_contig9853.1.1|Name=mRNA_A-nodosum_M_contig9853.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=158bp
MQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGV
KHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKA
MCVNFLLALHDVCWDWCDCHLATKAAEHAFGTSADPQKSKNPGARSIFTL
ITKTAARV
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mRNA from alignment at A-nodosum_M_contig9853:7250..8031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9853.1.1 ID=mRNA_A-nodosum_M_contig9853.1.1|Name=mRNA_A-nodosum_M_contig9853.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=782bp|location=Sequence derived from alignment at A-nodosum_M_contig9853:7250..8031+ (Ascophyllum nodosum dioecious)
CAGGCCGTGGTGGGGAACATGCAGGAAGAGATCAAGAAGGCCTTGCTCCC CATCATCCACTACCAGGTGGACCTGTGGGCTTGCGAAGTCTCTGGGCGGA AATTTCTTGGCACACACGTCCACTACGTGGACAGCTCGTTCAACCTTCAA CACGCTCTCCTTGGTGTGAGTATAACAAAACACCAATTCGATTGTTGTTG TTGGCAAACACGTGCAGCGCGACACGCGCGAAGTTATGGAGCCGTACTAA ATACAAAAATTCAAAATCCGAAAGGACCGTGGGAGGTAATTTCGCCCGCT CGCCCCCTCCTGTATACCCAGTAGCTTGATCGGAGGCTGTGGAAGCAGTT GCACCCCGAACAAAGCACGTAGATGCAGCGCTCGAAGAGTTATCGCACAT ATTTTTTACCGTTTTTTTATGGCGCTCTTTTCTTTTTCACCCGCGTCTTG TATAGGTCAAGCACTACGCCCCTTCGTCCGAAGTTCAGGACAAGGAGAAG GCAAGCGGCATCCTCTTCACGATTTTCAAGGCCACCCTTCGCGAGTACGG CATCAGCATCGCCGACCTCGCCGGTGGAACAACGGACAGCGGACCCGACG TGAAGGCGATGTGCGTCAACTTTCTCCTCGCCCTCCACGACGTCTGTTGG GATTGGTGTGACTGCCACCTTGCCACCAAGGCCGCCGAGCACGCCTTTGG TACCTCGGCGGACCCCCAGAAGTCCAAGAACCCGGGAGCCCGCAGCATCT TCACCCTCATCACCAAGACCGCAGCAAGGGTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9853:7250..8031+

>mRNA_A-nodosum_M_contig9853.1.1 ID=mRNA_A-nodosum_M_contig9853.1.1|Name=mRNA_A-nodosum_M_contig9853.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig9853:7250..8031+ (Ascophyllum nodosum dioecious)
ATGCAGGAAGAGATCAAGAAGGCCTTGCTCCCCATCATCCACTACCAGGT
GGACCTGTGGGCTTGCGAAGTCTCTGGGCGGAAATTTCTTGGCACACACG
TCCACTACGTGGACAGCTCGTTCAACCTTCAACACGCTCTCCTTGGTGTC
AAGCACTACGCCCCTTCGTCCGAAGTTCAGGACAAGGAGAAGGCAAGCGG
CATCCTCTTCACGATTTTCAAGGCCACCCTTCGCGAGTACGGCATCAGCA
TCGCCGACCTCGCCGGTGGAACAACGGACAGCGGACCCGACGTGAAGGCG
ATGTGCGTCAACTTTCTCCTCGCCCTCCACGACGTCTGTTGGGATTGGTG
TGACTGCCACCTTGCCACCAAGGCCGCCGAGCACGCCTTTGGTACCTCGG
CGGACCCCCAGAAGTCCAAGAACCCGGGAGCCCGCAGCATCTTCACCCTC
ATCACCAAGACCGCAGCAAGGGTC
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