mRNA_A-nodosum_M_contig977.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig977.2.1
Unique NamemRNA_A-nodosum_M_contig977.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig977.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig977contigA-nodosum_M_contig977:61334..62633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LB73
PFAMsAn_peroxidase,Cyt-b5,DOMON,FAD_binding_6,NAD_binding_1
Model size281
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.94e-07
EggNOG OGsKOG2408@1|root,KOG2408@2759|Eukaryota
Descriptionperoxidase activity
Cds size276
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870505.0789297-UTR-A-nodosum_M_contig977:61333..613361680870505.0789297-UTR-A-nodosum_M_contig977:61333..61336Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig977 61334..61336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870505.0925248-CDS-A-nodosum_M_contig977:61336..615701680870505.0925248-CDS-A-nodosum_M_contig977:61336..61570Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 61337..61570 +
1680870505.10474-CDS-A-nodosum_M_contig977:62591..626331680870505.10474-CDS-A-nodosum_M_contig977:62591..62633Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig977 62592..62633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig977.2.1prot_A-nodosum_M_contig977.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig977 61337..62633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig977.2.1

>prot_A-nodosum_M_contig977.2.1 ID=prot_A-nodosum_M_contig977.2.1|Name=mRNA_A-nodosum_M_contig977.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=92bp
MARGASKEPSSSPDMWCSLTRLLRGVVTLALLLVAAVVDSPGVVTAQETY
YLGFEARTYNGTNNNLDYPLWGSVNISQVRAIAAANYSDGVS
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mRNA from alignment at A-nodosum_M_contig977:61334..62633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig977.2.1 ID=mRNA_A-nodosum_M_contig977.2.1|Name=mRNA_A-nodosum_M_contig977.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1300bp|location=Sequence derived from alignment at A-nodosum_M_contig977:61334..62633+ (Ascophyllum nodosum dioecious)
AGGATGGCGAGGGGGGCATCCAAGGAGCCGTCTTCCTCGCCAGACATGTG
GTGCTCGCTTACCCGTCTTCTGCGAGGTGTTGTAACGCTGGCGCTCTTGC
TCGTTGCCGCGGTCGTTGACAGCCCTGGAGTGGTTACCGCCCAGGAAACG
TACTACTTGGGTTTCGAGGCGCGCACGTACAACGGCACCAACAATAACCT
CGATTACCCTCTGTGGGGATCTGTCAATATTTCTCAGGTAAGGTTTTTCA
TCGTACTTTTTGCCCGTGAATCCGTACCCTCAACTCGTGCTCTTCGTCTC
AGCGGAGAGAAGTTGCGGCACCAACTTTATGGCTGGTGTACGCTAGGCGC
AGCTGCCCGGACACTCGAAATAGCGTCCTTTTTTGCCCTGTGGAACTGGT
TTCTCGTTCGGCAAAGCTGTATCTTCAAATCTCGATTGATCTCGTGCAGC
ATTCTTAAAAACTCTCATCAGCTATCGCCGCCATACAATGCAATAGAGCC
GGCCAGCGTAAATAATAAAACGCGAGGAACATGACGCGCCGTACCCTCGT
GGCAACCCGTTAGAGATGCGACAACATGCGGTGTTCCTTAAGCTTCAATC
TGTAGACGTGTTCGATGAAAACCGTGTTTATAACCAGGCCGGAAACAGAA
GGCTGGCCTGGGGTTCGTTCTACCTCGAGAGTCTACCGAGCAACACAACT
CGGCCCGCTAGCGAGAACAGGGTAGTCTTCAACCGCTCAAGCTTGGCAAT
GAGTGGGGATGCCTTCGTTGATGTCCTCGTGCTGTCGACTCTATTTTTTT
AATGCCCCTCAAATGCCCAACACTAAGAAAGCTGGCTGAAAAAGCGGTCC
ATTATAGCGAAATAATCTTTGCTATATAAGAGTGATTCTACGATAGCCCC
CCCCAAAACCGTCGATTGTATGGACAAGAAAATGAAGAATATTAACCCCT
ATAGGCATCCAAAATTTGAAACAAAATGCGTGATAGACTTGCATTTACAA
TGACGTCCACATGAACTGGTCAGACCATCAAGAAAATGAATAATGGGGAA
GAAAAGGCGTGGAATCGGTTTTGAAACCGTCGCTGGCATGGGGGGGGGGC
TTTCGTAGAAACACTCACAATTACTACAGATTAGAACGTATTCCTTCGTG
TCCACTGTTGTAATCGCCGCACACTCGCCCCCCTTCCCTCCCCTCCTCCT
CTATCACGACTTTTGATATCGTTATTTGGCCGGCGCCTTTGCTGGGAATA
ATCCCCAGGTTCGAGCCATCGCGGCGGCGAATTATTCGGACGGAGTTTCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig977:61334..62633+

>mRNA_A-nodosum_M_contig977.2.1 ID=mRNA_A-nodosum_M_contig977.2.1|Name=mRNA_A-nodosum_M_contig977.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig977:61334..62633+ (Ascophyllum nodosum dioecious)
ATGGCGAGGGGGGCATCCAAGGAGCCGTCTTCCTCGCCAGACATGTGGTG
CTCGCTTACCCGTCTTCTGCGAGGTGTTGTAACGCTGGCGCTCTTGCTCG
TTGCCGCGGTCGTTGACAGCCCTGGAGTGGTTACCGCCCAGGAAACGTAC
TACTTGGGTTTCGAGGCGCGCACGTACAACGGCACCAACAATAACCTCGA
TTACCCTCTGTGGGGATCTGTCAATATTTCTCAGGTTCGAGCCATCGCGG
CGGCGAATTATTCGGACGGAGTTTCA
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