mRNA_A-nodosum_M_contig976.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig976.18.1
Unique NamemRNA_A-nodosum_M_contig976.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig976.18.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.950e-18
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:   82 MKSGDDPDDFLYTMDGCRERLEGMGQPVPDERYEDIIFQALPAEYERVRTASYERRDFHVADIRHMMSALYIDYLSRPNNSPLVAGRGVAKQATGGDDSTIKCHYCGN---PGHRQKICVA 435
            M  G+DPD F  T++  R+R + M + + DER+ED+I QA+  +Y+ VR  S+  R F + +I+  M ++YID LSR      VAGRGVA  A+ GD S IKC  CG      +R  +C++
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTWTKS-VAGRGVAMPASNGD-SIIKCFNCGQFRRGNNRLLLCIS 119
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig976.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE7.950e-1841.32Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig976contigA-nodosum_M_contig976:278812..279279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size468
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870504.7985532-CDS-A-nodosum_M_contig976:278811..2792791680870504.7985532-CDS-A-nodosum_M_contig976:278811..279279Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 278812..279279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig976.18.1prot_A-nodosum_M_contig976.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig976 278812..279279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig976.18.1

>prot_A-nodosum_M_contig976.18.1 ID=prot_A-nodosum_M_contig976.18.1|Name=mRNA_A-nodosum_M_contig976.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=156bp
WSALKEKYNSHTKEARRAYHEKLYSTKMKSGDDPDDFLYTMDGCRERLEG
MGQPVPDERYEDIIFQALPAEYERVRTASYERRDFHVADIRHMMSALYID
YLSRPNNSPLVAGRGVAKQATGGDDSTIKCHYCGNPGHRQKICVAWIAAQ
CKGRNQ
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mRNA from alignment at A-nodosum_M_contig976:278812..279279-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig976.18.1 ID=mRNA_A-nodosum_M_contig976.18.1|Name=mRNA_A-nodosum_M_contig976.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at A-nodosum_M_contig976:278812..279279- (Ascophyllum nodosum dioecious)
TGGAGTGCCCTAAAAGAGAAGTACAACAGCCACACGAAGGAGGCTAGAAG
GGCTTACCATGAAAAGCTGTACAGTACCAAGATGAAATCAGGCGATGATC
CCGACGATTTTCTGTACACCATGGATGGCTGTCGCGAGCGTCTGGAGGGC
ATGGGCCAGCCAGTGCCTGACGAGCGGTACGAGGACATCATTTTTCAGGC
TCTTCCTGCCGAGTACGAGAGGGTCCGCACAGCTAGCTACGAGAGACGGG
ATTTTCACGTTGCAGATATTCGGCACATGATGAGTGCCCTGTACATCGAC
TATCTTTCCCGTCCGAATAACTCCCCCTTGGTCGCGGGTCGTGGGGTTGC
CAAGCAGGCAACCGGGGGAGACGATAGCACTATCAAGTGTCACTATTGCG
GTAATCCGGGACACCGTCAGAAGATCTGTGTCGCTTGGATAGCGGCCCAG
TGTAAAGGTAGAAATCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig976:278812..279279-

>mRNA_A-nodosum_M_contig976.18.1 ID=mRNA_A-nodosum_M_contig976.18.1|Name=mRNA_A-nodosum_M_contig976.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at A-nodosum_M_contig976:278812..279279- (Ascophyllum nodosum dioecious)
TGGAGTGCCCTAAAAGAGAAGTACAACAGCCACACGAAGGAGGCTAGAAG
GGCTTACCATGAAAAGCTGTACAGTACCAAGATGAAATCAGGCGATGATC
CCGACGATTTTCTGTACACCATGGATGGCTGTCGCGAGCGTCTGGAGGGC
ATGGGCCAGCCAGTGCCTGACGAGCGGTACGAGGACATCATTTTTCAGGC
TCTTCCTGCCGAGTACGAGAGGGTCCGCACAGCTAGCTACGAGAGACGGG
ATTTTCACGTTGCAGATATTCGGCACATGATGAGTGCCCTGTACATCGAC
TATCTTTCCCGTCCGAATAACTCCCCCTTGGTCGCGGGTCGTGGGGTTGC
CAAGCAGGCAACCGGGGGAGACGATAGCACTATCAAGTGTCACTATTGCG
GTAATCCGGGACACCGTCAGAAGATCTGTGTCGCTTGGATAGCGGCCCAG
TGTAAAGGTAGAAATCAG
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