prot_A-nodosum_M_contig976.18.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig976.18.1
Unique Nameprot_A-nodosum_M_contig976.18.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length156
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig976.18.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.950e-18
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 0 
Query:   28 MKSGDDPDDFLYTMDGCRERLEGMGQPVPDERYEDIIFQALPAEYERVRTASYERRDFHVADIRHMMSALYIDYLSRPNNSPLVAGRGVAKQATGGDDSTIKCHYCGN---PGHRQKICVA 145
            M  G+DPD F  T++  R+R + M + + DER+ED+I QA+  +Y+ VR  S+  R F + +I+  M ++YID LSR      VAGRGVA  A+ GD S IKC  CG      +R  +C++
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTWTKS-VAGRGVAMPASNGD-SIIKCFNCGQFRRGNNRLLLCIS 119
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig976.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE7.950e-1841.32Integrase catalytic domain-containing protein n=1 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..82
e-value: 3.0E-13
score: 49.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 129..143
score: 8.581337

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig976contigA-nodosum_M_contig976:278812..279279 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig976.18.1mRNA_A-nodosum_M_contig976.18.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig976 278812..279279 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig976.18.1 ID=prot_A-nodosum_M_contig976.18.1|Name=mRNA_A-nodosum_M_contig976.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=156bp
WSALKEKYNSHTKEARRAYHEKLYSTKMKSGDDPDDFLYTMDGCRERLEG
MGQPVPDERYEDIIFQALPAEYERVRTASYERRDFHVADIRHMMSALYID
YLSRPNNSPLVAGRGVAKQATGGDDSTIKCHYCGNPGHRQKICVAWIAAQ
CKGRNQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC