mRNA_A-nodosum_M_contig97.64.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig97.64.1
Unique NamemRNA_A-nodosum_M_contig97.64.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 5.790e-43
Identity = 86/138 (62.32%), Postives = 97/138 (70.29%), Query Frame = 1 
Query:  427 GSRPSAASRRTNPLERTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNM---------------------NLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSK 777
            G+RP    ++T+PLE+TLAILIQSMRGN++VVEMKND EISGILEETD NM                     +LSMVDVR T+  GSV+KMDV LVQGKMIRYVHIPDKVDAISNL  HMR M +    Y RNMLK K
Sbjct:    6 GNRPQPRQKKTSPLEKTLAILIQSMRGNKIVVEMKNDAEISGILEETDRNMKAATVWLAAYGLTCSRAGPAPSLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQ--GYHRNMLKPK 141
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.040e-33
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:  526 MKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTT 783
            MKND EISGILEETD NMNLSMVDVR T+  GSV+KMDV LVQGKMIRYVHIPDKVDAISNL  HMR M +    YRRNMLK KT+
Sbjct:    1 MKNDAEISGILEETDRNMNLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQ--GYRRNMLKPKTS 84
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: W4H8K5_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8K5_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.250e-15
Identity = 39/106 (36.79%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:  472 RTLAILIQSMRGNRVVVEMKNDVEISGILEET-DGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTTP 786
            R++ +L+QSM G  V +E+K +  + G +EE  +GNM++ + +V+ TS QG++  +D   V GKMI +VH+PD+++   +L  +M+ + K+ + Y+R+  K  TTP
Sbjct:    6 RSVVVLLQSMLGMDVKIELKTEYVLEGRVEEVGEGNMDVRLTNVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAVHLRDYMQMVDKNRSMYQRSTRKPATTP 111
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A024UUS1_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUS1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.140e-14
Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:  472 RTLAILIQSMRGNRVVVEMKNDVEISGILEET-DGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTTP 786
            R++ +L+QSM G  V +E+K +  + G +EE  +GNM++ +  V+ TS QG++  +D   V GKMI +VH+PD+++  ++L  +M  + K+   Y+R+  K  T P
Sbjct:    6 RSVVLLLQSMLGMDVKIELKTEYTLEGRVEEVGEGNMDVRLTGVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAAHLRDYMHLVDKNKNLYQRSTRKPPTKP 111
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: UPI001E1D8F86 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D8F86)

HSP 1 Score: 75.1 bits (183), Expect = 3.420e-13
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:  475 TLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYR-RNMLKSKTTPK 789
            ++  L++ + G R  VEM+++ E++G+++  DG MN+SM DV + S  G  KK D   V GK IRYVHIPD+++  S +   ++ M   TA  R R  +K +   K
Sbjct:   13 SMLCLLKVVEGKRTTVEMRDEKEVTGVIKHVDGYMNISMEDVVFKSLTGK-KKFDKFFVNGKTIRYVHIPDEINMKSAMEAKLKEMCTYTASMRVRQEIKDQAWAK 117
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A0L8G4N7_OCTBM (Sm domain-containing protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8G4N7_OCTBM)

HSP 1 Score: 74.3 bits (181), Expect = 6.920e-13
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:  439 SAASRRTNPLERTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSV--KKMDVALVQGKMIRYVHIPDKVDAISNL 711
            + +SR T  ++ +L IL+Q++ G +  V+++N+  + G+L   D  MNL++ DVRY SA   V  K  D   +QG+ +R+VHIPD VD IS++
Sbjct:    2 ATSSRETALIKNSLIILLQAIVGKQTTVDLRNENSVEGLLLHVDAFMNLTLEDVRYISANDKVGDKYFDKLFIQGREVRFVHIPDDVDIISSI 94
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A5D6XV54_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV54_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.810e-12
Identity = 36/104 (34.62%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:  472 RTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTT 783
            R+L +L++S+ G RV V++KND  + G++ E   +M+ +MVD   T   G++ +MD   V G+ I YVHIPD+++   +L  + R + +S   Y R    + +T
Sbjct:   42 RSLLLLLKSLVGLRVRVDLKNDATVEGVVAEVVHDMDFTMVDACETKPNGAMVRMDEVFVMGRTILYVHIPDRINLTQHLQQYTRMVRQSATMYTRTKRSAAST 145
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: UPI0006C9B558 (U7 snRNA-associated Sm-like protein LSm10 isoform X1 n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C9B558)

HSP 1 Score: 71.2 bits (173), Expect = 2.960e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  466 LERTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIP 684
            L  TLAIL++++ G R  VE++N+  I G++E+TDG MN++M D  +T  +G   K ++  VQ + IR+VH+P
Sbjct:   14 LYNTLAILLKAVEGERTTVELRNEASICGVVEQTDGFMNINMKDCLFTDPRGDSYKYEIFFVQARNIRHVHVP 86
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A8K1CIL4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIL4_PYTOL)

HSP 1 Score: 71.2 bits (173), Expect = 7.970e-12
Identity = 34/105 (32.38%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:  472 RTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTTP 786
            R+L +L++S+ G RV +++KND  + GI+EE   +M+ +++D   T   G   +++   V GK + YVHIPD+++   +L  + R + +S   Y+R+  K+   P
Sbjct:   20 RSLLLLLKSLAGLRVRIDLKNDCVVEGIVEEVLHDMDFTLLDACETKPNGRTVRLEEVFVMGKTVLYVHIPDRINISQHLQQYNRMIRQSQDMYKRDKRKAPLPP 124
[Close]
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A6G0XYB6_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYB6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.320e-11
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:  451 RRTNPLERTLAILIQSMRGNRVVVEMKNDVEISGILEET-DGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDK---VDAISNLHI 717
            +RTN   R++ IL+QSM G  V +E+K +  + GI+EE   G M+L M +V+ TS QG    +D   V GKMI YVH+PD+   +DA +  H+
Sbjct:    4 KRTN---RSIIILLQSMLGMEVRIELKTEFIVEGIVEEVGQGTMDLRMSNVKSTSPQGVTMHLDEMFVMGKMILYVHLPDRYDLMDATTQAHV 93
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5S1_ECTSI5.790e-4362.32Putaive LSm10 protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JYY5_9PHAE1.040e-3377.91Sm domain-containing protein n=1 Tax=Ectocarpus sp... [more]
W4H8K5_9STRA2.250e-1536.79Sm domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A024UUS1_9STRA6.140e-1435.85Sm domain-containing protein n=1 Tax=Aphanomyces i... [more]
UPI001E1D8F863.420e-1337.74U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]
A0A0L8G4N7_OCTBM6.920e-1339.78Sm domain-containing protein n=1 Tax=Octopus bimac... [more]
A0A5D6XV54_9STRA1.810e-1234.62Sm domain-containing protein n=1 Tax=Pythium brass... [more]
UPI0006C9B5582.960e-1242.47U7 snRNA-associated Sm-like protein LSm10 isoform ... [more]
A0A8K1CIL4_PYTOL7.970e-1232.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XYB6_9STRA1.320e-1143.01Sm domain-containing protein n=1 Tax=Aphanomyces e... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig97contigA-nodosum_M_contig97:828091..838388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000014585
PFAMsLSM
Model size865
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons6
Evalue5.94e-16
EggNOG OGsCOG1958@1|root,KOG3428@2759|Eukaryota,1MHKJ@121069|Pythiales
Ec32 ortholog descriptionPutaive LSm10 protein
Ec32 orthologEc-12_008900.1
DescriptionPutaive LSm10 protein. Source PGD
Cds size384
COG categoryK
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig97.64.1prot_A-nodosum_M_contig97.64.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig97 828164..837980 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870494.346675-UTR-A-nodosum_M_contig97:828090..8281631680870494.346675-UTR-A-nodosum_M_contig97:828090..828163Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig97 828091..828163 -
1680870494.4338806-UTR-A-nodosum_M_contig97:837980..8383881680870494.4338806-UTR-A-nodosum_M_contig97:837980..838388Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig97 837981..838388 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870494.3594882-CDS-A-nodosum_M_contig97:828163..8282351680870494.3594882-CDS-A-nodosum_M_contig97:828163..828235Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 828164..828235 -
1680870494.3720822-CDS-A-nodosum_M_contig97:828752..8288541680870494.3720822-CDS-A-nodosum_M_contig97:828752..828854Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 828753..828854 -
1680870494.385751-CDS-A-nodosum_M_contig97:829158..8291951680870494.385751-CDS-A-nodosum_M_contig97:829158..829195Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 829159..829195 -
1680870494.3971026-CDS-A-nodosum_M_contig97:829867..8299531680870494.3971026-CDS-A-nodosum_M_contig97:829867..829953Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 829868..829953 -
1680870494.4091392-CDS-A-nodosum_M_contig97:831035..8311121680870494.4091392-CDS-A-nodosum_M_contig97:831035..831112Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 831036..831112 -
1680870494.4243658-CDS-A-nodosum_M_contig97:837970..8379801680870494.4243658-CDS-A-nodosum_M_contig97:837970..837980Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 837971..837980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig97.64.1

>prot_A-nodosum_M_contig97.64.1 ID=prot_A-nodosum_M_contig97.64.1|Name=mRNA_A-nodosum_M_contig97.64.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=128bp
MEQDTRGSRPSAASRRTNPLERTLAILIQSMRGNRVVVEMKNDVEISGIL
EETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISN
LHIHMRAMAKSTADYRRNMLKSKTTPK*
back to top

mRNA from alignment at A-nodosum_M_contig97:828091..838388-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig97.64.1 ID=mRNA_A-nodosum_M_contig97.64.1|Name=mRNA_A-nodosum_M_contig97.64.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10298bp|location=Sequence derived from alignment at A-nodosum_M_contig97:828091..838388- (Ascophyllum nodosum dioecious)
GCCCTGGTGCTTCTGACACTGTCAGAAGTTGGCCAATCCGAACGCTTACA
CAAGAAACTACGAACGGATTTAGCCCTGCTCACCGCATTGCATAGCTTGC
AGCAGGACAGCTTGACGTTGCTTCTAGGCCTTGACTGTGGCCGTAACCGG
ATTTGACAAGGGCGGAAAAAAGATCGTACATCGACCTTCCAAGGGAGTGC
TAAACCCTAGCATATAAATATTCAAAGAGGCGTGCCCCAGGAAGTGTCGT
CAGGGAAAGCTGATCTCTGACCTTTAGCTGTTTTTTTTCTGTTTCAAGCT
GGAGTGGCGATTTGGGACGTTTGAAAAGAGGTCCTACGAGTGGATAAGAG
CTGGCGCACTACCGTTACAGCTCCGAGCTAAAGCCCTGCTAATAGGACAA
GAAAAATAATGGAGCAAGGTAAACGATAGGAGGTGCGAGAGTTGAATCTG
AAACAGACCTTACACCGCGGACCTGATACCACAGTACAATTAGTTTTACT
AATATTATGATTTTACATGGTACGGTCATCACATATAGTAGGAGAACTAA
CGCCTGCTCCTATGGCCCTTTGTACATTCGAGGCCTCCCATATCTATGAA
CTGTAGTCTACAATTTATCGTAATAACAATGATGATCTTTATCCCTTCTA
CAAGTATGATCATATTACTGTAGTCCTGATTTACAGTTGTTGTTGCTGTT
GTCTTCACATTAACCGATCGGGCCTCAACCATACCCAGTAATATACGTGG
TTGCCAATCTGGTACGTGGTCACAAAGAGGTACCAAGGTCAACGGGTCAC
ATCATGGTGACAACCCGCTACTCCGACCAACAGGGATCCAAATCGCGACA
AAAAGTTATGCGACTCTACAAGCGATGGCACCGACCAATAACAAAACGGT
TCATCAAACTTCCTTTACTCCATATTATCGAGAGCAGCCTCGATCGACTC
GGATTATTTTTGCCTACCCACGACCAGCGTTCTCAGCAACAAATCGGACA
AACACGTTCCAACCAGTTTTGATCAACAATTCCAAGTTTCTCAAGGCTAC
ACATCGTACAAAAATAAGGAAAATTGAAATACCGAGGTCCATGGTGGTGG
AGGCCTTGAGCTGTTGAAGCCGGCGCGCGAGCCAGCATCCAGCCGTCACA
AAGCCCTGTGCATCCTTGAAAAAGCCCCCCGAATCTTGCCCGTTCGCCGC
TCCATGTGGCCCTCGTAGGAAGAAAAATGACCGTGGTCAGAGATCAGCTT
TTCCCTCAGAAACCTCCCGGTTCGCGCTTTCGATTCTCGCGCACAGGGGT
TCAGCCCTCCCCTGGCTCGTCAACGATCGAGCTGCCCTCCGCCTTCGCCG
AATCTGGTGCGTACCCACCTGATAGAGAAGTACCAGGCTCTCCGCGACAG
TGCTCCCTGCCTCTCGCGTGCCGCCACCCTCCCGAAGGCCACCAAATTGG
AGCTCGGAAGAGGCGCACACCTGAAAACACCATCCTCAGCCAACCATACT
GCCGCCGCGTCTCAACCAACAGGTCGGATCGCGAAGGCAGCCAGTTGGCT
GCATCTCTCGAGGGTGAGCCCGCCCCTACTCCCGCCGGAAAGACCCTCCC
ACACTCATCCCCCGAAACCAGGTTTCGGAGGGAGAGGGCACGAGTGTGTT
TTGTGTTTTCTTCCCATTCATTCTGGACTTCAATGGACGTAACGGCCGGG
GTCACACAGGAAGAAGGTAACACAGGATTTTCCATCCACCTTCTTTCTGC
GGTGCTTGCCTTAATTTTTCTCGCGAGAAGGATTCAGCCATTCCTTTCCC
TCGTCGACCGTGAAGTCGAATTTTGTGTACCAACGATTTAATCGTTCTCC
ACCCGTTGGGCATTTTTATTTTCATTTTTTAGTTTTTCAGTGAGAAAAAT
CCCGTTTGCCGGGATCGAACTATAATAGTATAACGAGAAATGTATCCACG
ATTTATCCTCATGCAACTAACCTTCAAACACCTGCTTTCATAAATGTACA
TCAGTCGGCATGTTATAAATTTGAGGTCCTTCACATCTATGAAATGTAGA
CTTCCTTCGAAATAACAATGCTTCTACCACCATTAATTACTATTACTATT
TATTGCAGTATATACCCTATTGCCCCCTCTTTTACGATAAAACATATTCT
CCTCAGTCAATGTAGAATATAGAATATAGTTACTCCTGCTTTCATGTGTT
TACATCATAAATGTTACTGTTGTAGACTACACCTCACCCTTGTTTCCATA
AATACGGTATATATATATCTTCACATCTATGACTTGTATATTTTCTTCAT
CGATATAACAATAGTGATCATTATCTATACTAAGACCAGCTAGACTCATG
GCATTCCGCGTTTTGTTTTGATGTCTTAGAGTATCTGTCTCTACAACCGT
TATTTGGTCTTTTTCTATGGATTATGTGGAAAATATGCCTGGTACAGCAA
TCCTCCTTGTCTCTCATCAAATTTTCACCCAAACCCGATGCGTCCATCAT
AATTATGAGGGCTTGTCATTATTTGACGAATCGTTTCCAAATGAAGACGT
CACGAGCGCCTCGCGAAGCCTGCAACAACAGGAAACTGTTTATGGGATTA
AAATGGGTTCCCCGGTGTTAGTCGCAAATGGGGTGAAAAAAACAGTATAA
TATTGACCAAACACGATTACAGGCATCGTCGAGTAGGAACATGCAGTTCA
TCCACGGATCCTTCGAGGAGGCTTCGTGAACCGTCCAAGGTGTCTTCGTG
GAGCCTTCGGTATATGCAACCTCCGCGAAGGGTTTGTAAACCTCCGCGAA
GGGATCGTGGAGGCGCCTTGGAGGCTCCGCGAAGCCTTCTCGAAGACACG
CTCCGCGAAGGTTTCGCGGAGCCCTCTTGAAGGCTTCGTGAAGGCTTCGT
GAAGGGTGGCTGATTCGTCAAATAATAACAAGCCCCCACAATTATTGTAC
CACTTACTTCTCTCTCTTTCAGCTTATACCTTAGACTACCCCTGCTTTCG
TAAATAAAAATTCGTGCCTTATAAATCGAAGCAATAAACTTAAACGATGC
TACATAGAATTAATGATTGCTTTCATGAATATATATATCATATATCTCAA
GAGCCTGATGTAATTTTGTAACCCTCACATCTAGTATTTGTAGAGCCTCT
AAAAATGACCCTAGCCTATCAAAACGTTTAGATATGTTTATTTGATCATA
CCTATGACCAATTCAATGTAGTTCGAAATTCTTGGTCGGTATATAATTTA
CATCTAAACATATTTCATTGTAGTAGCCTAAAACTCTTAGGCCGTATATT
ATGGGGTCAGAATTGGAATTTCGACTTTGTCAGAATTTAACAAATCTAGC
CAAGTTCCAATAACGAGAAAAAAGTTCTGACTTGTCCTTGTAGTGGTGAT
CATTGTTGGAACTTTGGGCTTTTGGAGATGCGGATCGCGCATGAGTTTGG
GAGCGTTAAACTAACGCTGGTGCCCACTGTTTGCCCACCACAGTAGTTGG
TACATAGGGTGTCGCGCATGCGTTTGGGAGCGTTAAACTAAAGCTGGTAC
CCACCGTTTGCCCACCACAGTAGTTGGTACGTAGGGTTCCCGCCTAATTT
TAAATTCAAATGATGTCAAAAATAGACTGCTGTGCTACAGTCCATTCATT
GTATATATGTATGTATAGCATGTAAACCTATGTATGTACTACATGTATAT
GTAGCCATCCCATACTTTGCACAGCAGTGTACAGATCAACCGGTTGCCAA
CCTGCTCGTCGTCAGCTGAACAGGGGAAAATAACATTTCTTTGTCCCCGC
TCGCGCCTGAGAATTTGGTCTCGCAAGACGGCTTCGGTCGTCCTGTCCCG
GGTCAGCCTGATTGTTCTCCACACAAGCTGAATAATATGATGCTTGCTAT
ACACGTAATCGGGTCAGTCCCGACTTTATCGGGTCACGCAATTGCGTACC
GTTAGCGTTAACTGTCGAGAGTCCGCCGGCACAGAGTCAGTACAGGTCTC
AAGTAACGGGTGCTACCTTTGAAGGTCACCATGGATCAATTAATGTCCAA
CTCTCTTTTCCCAACTGTTGTCTGGTGTACCTCCTCCGATATGCCCCATG
TGAATGAACATTCGTCACAGCCTGATTCACCAGCTCACGGTCGTTGAGAT
TTCAAAACAGGCTGACTGCTGTACGGTGCATTTTTATTGCATTTTTATTG
TATTGTGTGGAGACATCGGCAGGCGGTCTTAGATGTAGCAACGTCACGGA
AGGCGCTGCCGCTCCAAATGCTCAAGCTCAACGATAACACTGGTAGAGTC
CAATATTATGTCGGGGACTCTCCTCGGTAACCAAGCTCGGTCGGGCTACG
GCGGCGATAACGAAAGGCCAAGGCTTGCTTCTCCTCTCTCCTCTCTCTGC
CTCCTAATCTCTGGGTTTGATGAGCAAAACGCGGCGACAATATAAAGACT
TCCTCGAGGAAGTTCTGACCAAGGATTCGCTACCAAACACGCATCGTAGA
TCGACTGCTGAAACTGCCCTCTTGGAGCTCCGGGTCAACCTCCCATTCTA
AAATGTAGTAACATCTTTAACGTTCTCAGACAAAATTACGCATTTGAACG
ATCATCGATGTTTATCGTAGCTCACGATATGGTACCTGTCAAACATTAAA
CTTTCGAACTCCTACCGACCCAGCTTGGTCGCAAGTATGTTGAATTTTTC
ACGACAAATATTCTGACTCAGATAAAGTTCGACAAAAAAAAGTCATTCAA
AGACTAAAATACTCTTACGGCCATTCATTAACAGAAATGTGACTTGTTTC
AACTTGCGTCTCATGATTTTAGTACATGTATCAGCTCTTTTTAAACAGAC
TTTTACGGAAATCTTCATTTCAAAAGACTTTTCAAAGTTCAGATGTACAA
GATTGCTCCTTCTTCCATACCTGGTTCGGCAAATTTTCGGACACGATGGA
AGAAAACATCTTGTTTTGACAAGTTGTATTTATTTTTCTCCGTCAGTCTA
CTCCGACGCCTCGTTGATGAAACAACGCAGGCTCTACTTCCTGCTTCGTG
TGACATTCTTGTCAAATCCTCATGTACCGGCTTCAAAGGAAAAAACTCTC
CTCCGTCAGTGGTGATCGCTTCAAAAGCCGGCGATACTCCGGGTCTATCG
AGGCCCGTACTGATCGCGGGCGACTTTGGCGACGTTTTCATTCGATCCAT
AACGAAGTGATTGGCAATTCTGGAATTCAAGATCATTCTTAACGATGCCG
GCAGTATGCCTTTGAGCTGCTCTTAGTCTATTAGTTAGATTAACTCGTAA
TCCGGCGGGAGTAGGCAGCAGTTCACGTGCCCGCACCATCTTCAATACAA
AAAAACAGTCGTCATTTTCAAAAGTCCGTTACAACCTACTTCTGATGACC
TGAGTCTGACCTCCTCTCCGATAATATACGGCCTTAGTCCACAGCTGTAG
ACAGACAAACCGAGTACTGTAACTCCGCTTCCAGGCTCACCCTCTGGTTC
TTGCACTGGTCGCGAAGTCCGCAGCTCCTCGATCGGTGCTCTTCTGGCGT
CCTCCCTTGCGCTCTCGATCGGTTCCTCGGCCGTGTACTCTACGTACAGT
CTTGCACTCCTCTGGTGGTGCTGTGTAGACCGCCGGTTATTCTTCTTCTG
CTCTTCACAGCCAAAAGACGCGGCACAGACAAATCAGTACTGTAACCTGA
ATCCAGGCTCCGCCTGGGTTCTTGCACTGGGCACGAGGTCCTCGCCTCGT
GCGGCCGGTGTTCCTCACTGGCGCTGTCCTCAAAGCGCGCTCTGGACGGG
ACTACTGAAATCTAAATTCATACCTGATAGTGTTCTTTTGTGTTTTGTTT
TCTGTTTTGGTGTCCCTACATGGTGAATAATGTCAGTGTACAGTATAACG
GTGGGCTTCTCCCCGAAAATATACTGTTGACCCTATGTGATAACATTGGG
GAACCCTTTTAATACCATGCAGAGCTTTTCTCCTTACTTACAGCCGATGT
TCCCACCTAAACTTTCTGATTGCTCAGGAGGTTTAGCTGCGTTTAGATTT
GTTCTTAACCCGTTGACATAACATTTTTATGTACGGTATTATGAACTCGT
AGGCTCACAAGAAAGACCAGAGCCGCTCCCCTACTACAGTAGAGCCCAGA
CTCTGTTCTTAAACTTTTGTGAACGAAAAATTGATACCAGGTAAATAAAG
AATCGTGTAAATGGGGGACTATCTCGCCTTTCCTTCAACTTCTATTTCAA
ATATTAGTCTTCTGCGACACCTGGGTGGCCGGGGTCTTATCCCTTCAACT
ATAAAATCATCTCTCCGTTTGTGGTACTTACCGGTGGATGGTAACTACTT
GTACAACATCACCCCTAATGGTCGTCTACCTACTGGTACGTGTTTAGAAC
TCTAGTCTACACATTCTACGATCTACTGCTATGATTCACTAATATTTGAA
TCCGATCCAAAACCCAATAAAACATCATTTAGTTATATTTAGTTTCATTG
TGTGTTCTTGACTCTGTTTTGGTGTACCTGTACCGCCGGTACTTTCAACA
TGCCCACTTCATACCAATAGTGGGTGTGGGAAAGGGAGGCGAATATTAAT
TGGTCCATGGTGACCTACCAAGGCAGCACTCGTTCGGAACTACCTTGAGG
TTTACTAGCCCTGTGCCGGCTGTCTCTCGGCAGTGAACGCCATCGGTACG
CAATTGCGGGACCCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGT
TTCATAAATGGACGCCGCCGCGGAACTCAGGAGGAATCCCGTAAGTAAGC
ACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGTC
GGATGAACCCGTCTCGCGAGACCAAATTCTCAGGCACGCACGGGGACAGG
GGAATACTTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCT
TACCCGGTTGATCCATAATCTGCTACCTGGTATATGTGATGACCATACAT
ACATACATACATACATGCTGTATGACGATTATTGGAAATGTACATTACAT
CGATGGGTTTCTCCCCGACATTTTACTGTTGATCCTATCCTGTTGATACT
ACGTACCATTGGGAAATATAACCCTGACCCGATATTATGCCATTACATCC
CATGCAGAGTTTTTGTCCTTGCAGCCAATGTTCCGACCTAAACGACCGTG
GTGGTGCCTCTCTTGCCCAACTGGCCATCCTATGCCCTGCCAACTACCCT
TTGCCCCACCGACTACTGTACCCTAGATACAAGGGGTAGTCGACCTTCAG
CCGCAAGCAGGCGAACAAACCCGCTTGAGCGGACGCTAGCTATTCTAATA
CAGGTAAGGATCTGGGAACTAACGGGCTCGCACCGAACAAATCCCTCATT
TTTGTACTAAACTGATAATATTGTCATAACATCAATAGACTAATACTCTA
GTGCAGTACAAGTAGTATATACCAGTAATGTATTATAGTACCAGTAACTG
CTTGTACAGGATGTTGGAACTCGTACCTAGCCGGTACTTTCAACATGCCC
ACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGAATATTAATTGGTC
CATGGTGACCTGCCAAGGCAGCACTCATTTGGAACTACCTTGAGGTTTAC
TGGCCCTGTGCCGGCGGACTCTCGGCAGTTAACGCCATCGGTACGCAATT
GCGTGACCCGATAAACTCAGGACTGACCCGATGGCGTATGGCGGTTTCAT
AAATGGACGCCGCCGCGGAACTCGGGGAATCCCGTAAGTAAGCACCAGAT
TCAGCCTGAGTATGGAGATGAGTAGGCTGACGCGGGACGGGACGGCTGAA
CCCGTCTCGCGAGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATAT
TTTTTCCCTGTTCAGCTGACCATGAGCAGGATTAGCAACCTTACCCGGTT
GATCCATACTCTGCTATATGTGATGACCATACATACATATACATACATAC
CTGCTACTCTGTCCAGACTATTTGTAAGCAACAGACCTCAGTACTATACC
TGGTTCAGAGCAGGACGAAACACGATCGTCAAGAGCAAACTGTCGGCCTA
TAATCTACTGTCTTGGTAACTATTATATCAATTACTATTATATTAAATAT
TAATAAGCCATACTGTACAGAGATGGGAGGGGGGGTGGGGGGGAGGTTCT
CCCAGGAAGCGGCTTCTCTCAACTATGCATGGCCAGAGAAAATCCTGCCG
TGATGGGCGTGATCAGTCACTGTTTACCGTCGCCGAGAAGTTTGTAGATG
GCGAGACAACTGACGACAATATTTTCTATATTCAGAGTTTTCAATAAAAC
TCGAGAATCTACATACTGTAATACCAGATACAGAAGGAGAAAAAAAACGC
TTCCGCCTTTCCCCTCTGATTCCGTTCCCCTCCAGAGCATGAGAGGCAAC
AGGGTGGTGGTAGAGATGAAGAACGACGTGGAAATTTCCGGTATACTTGA
GGAAACGGATGGGAATATGAAGTGAGTGCCTGTACTCGTGGTACAGACAG
GACAGGACAGTACCGTAGCGTGTAGTATGTACAGGTAGAAGTGTGTATAT
GCCCGGTATTAAATTGCACATAACCGCGCATTCCGGCCCCGTCATATTAA
TCAGTCTGAGCTACTCGCGCGCCCGCGCACATGTGTCTCTGTGTGTGTAC
GTGTGTGAGTATTTGTTAAATTGCACATAACCGCGCAATCCAGCCCTGTC
ATCCTAGTCATTCTATGGCTCACTCGAATTGATCCTCCCAGGGGGGAATC
AATGATACTTGTATGTGTGTGTGTGTGTGTTCTTCGCACTAACCGATCCG
GCCTCAGTAGCGCAACTGGGTTTGTCGGTTAAACGCAGCCGCTGAGATCA
AAGTACAAAAAAACATAACATGATAACGTCAAACGGCGCCCTCGCTTGCT
CTTTCTACTCGCGGTACGAGTACCGTCGCGCGATATCACAGGGACGAAAT
AGTGTATGTAGCCTTAAGAGCTCCTGCTTTGTTGCGAGGTAATTTCTTCC
CCCATCTTCGAGCACGCAGGCGTGAAGTCAACCTTACTATCTAGTCTATA
TATGTATACATAGTATTTTGACATTTTTTCCTGCCGTCCACCATGGTGCT
GCCATCGAATTGCGGCCGTCGTCAATCTCCACCTTTCTAAAAGTTTGTCC
ATGGTGGACGTCCGTTACACCAGTGCTCAGGTGCGTTAGCCTGCTGCTCT
AGTGGTACGGAGCTGTCCGCAAGCCTGTGTCATTCAAAAAGATACTAACC
TAATTGAGGAAACCACCTGGTACGATAAAGCCAGAGGGTCCAGAGGATAG
GGATCATGTCTCGCTCGCGTCTGCTGATTGCTCATTTGGGGTGCGTGTTG
CGCCAATATTCAGTATTTTGTTGACCTCGTTGTGCTTGGTAATTGCTGTA
TAGGGTGAATGTTTCGATGCTAGAGGACTTCTGCACTTATGCTGGGGCTA
TACTTGGTGATTGTTCGTGTTGGCTCTCGTTCAGGGATCGGTGAAGAAGA
TGGACGTTGCACTGGTGCAAGGCAAAATGATCCGATATGTACACATCCCA
GATAAGGTTGACGCAATCAGCAACCTGCATATCCATGTGAGGCTCCCTCA
CGTCGTATGTTACGTCGTATTTAATGCCGTATGAATGCTGTTTTCATGCG
CGGGAACTGAAGGCAACCTGCTCAACGTTCTCCTCCACGTAGACGAAGAA
CCAGACTGATTTCGTCTCCCCAACCTCAAGAATCTCCTCAAGCACACCTG
TATCTATTTCGCCCCTCCATTATTTTTCGCCTTTCCCCGACAAACCATGC
TTTCAAAGACAACGCCTGCCAAGAAGTTATTCTGTAGCAATGCCATTCAG
TCCTACTTGATGTCTTTCCTAGCTAATCCACAGCACTTGTTTCTACTACC
GTTTGTGTTGACTCTCCTCTCTCATGGGCCTTGTACCATAGAGCTAGTTG
AGACACTGGCAGAATGTCGCAATTTTTTTGTTTTGTAGGAGGAGAGGGCA
GAGTTCAAACTGTGGGACTAAAAGATCGGCGGAACGTTCGAGTTGACCCG
CGGGGTTGATGTTACCTGCACACGTTTTCTGTCATCCGGCGCTTTTGGTT
TAGATGCGCGCGATGGCGAAGAGTACGGCGGACTACCGCCGAAATATGCT
CAAGTCCAAGACCACACCTAAGTGACGGGCGCCTTGGCATCTTCTTCAGT
AAACGCAGGTAAACTTCCGCGTTGCTAGGTCGAAGTCGACATCATGCG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig97:828091..838388-

>mRNA_A-nodosum_M_contig97.64.1 ID=mRNA_A-nodosum_M_contig97.64.1|Name=mRNA_A-nodosum_M_contig97.64.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at A-nodosum_M_contig97:828091..838388- (Ascophyllum nodosum dioecious)
ATGGAGCAAGATACAAGGGGTAGTCGACCTTCAGCCGCAAGCAGGCGAAC
AAACCCGCTTGAGCGGACGCTAGCTATTCTAATACAGAGCATGAGAGGCA
ACAGGGTGGTGGTAGAGATGAAGAACGACGTGGAAATTTCCGGTATACTT
GAGGAAACGGATGGGAATATGAATTTGTCCATGGTGGACGTCCGTTACAC
CAGTGCTCAGGGATCGGTGAAGAAGATGGACGTTGCACTGGTGCAAGGCA
AAATGATCCGATATGTACACATCCCAGATAAGGTTGACGCAATCAGCAAC
CTGCATATCCATATGCGCGCGATGGCGAAGAGTACGGCGGACTACCGCCG
AAATATGCTCAAGTCCAAGACCACACCTAAGTGA
back to top