prot_A-nodosum_M_contig97.64.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig97.64.1
Unique Nameprot_A-nodosum_M_contig97.64.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length128
Homology
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 5.070e-45
Identity = 86/138 (62.32%), Postives = 97/138 (70.29%), Query Frame = 0
Query:    7 GSRPSAASRRTNPLERTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNM---------------------NLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSK 123
            G+RP    ++T+PLE+TLAILIQSMRGN++VVEMKND EISGILEETD NM                     +LSMVDVR T+  GSV+KMDV LVQGKMIRYVHIPDKVDAISNL  HMR M +    Y RNMLK K
Sbjct:    6 GNRPQPRQKKTSPLEKTLAILIQSMRGNKIVVEMKNDAEISGILEETDRNMKAATVWLAAYGLTCSRAGPAPSLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQ--GYHRNMLKPK 141          
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.310e-35
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = 0
Query:   40 MKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTT 125
            MKND EISGILEETD NMNLSMVDVR T+  GSV+KMDV LVQGKMIRYVHIPDKVDAISNL  HMR M +    YRRNMLK KT+
Sbjct:    1 MKNDAEISGILEETDRNMNLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQ--GYRRNMLKPKTS 84          
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: W4H8K5_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8K5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 9.510e-17
Identity = 39/106 (36.79%), Postives = 70/106 (66.04%), Query Frame = 0
Query:   22 RTLAILIQSMRGNRVVVEMKNDVEISGILEET-DGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTTP 126
            R++ +L+QSM G  V +E+K +  + G +EE  +GNM++ + +V+ TS QG++  +D   V GKMI +VH+PD+++   +L  +M+ + K+ + Y+R+  K  TTP
Sbjct:    6 RSVVVLLQSMLGMDVKIELKTEYVLEGRVEEVGEGNMDVRLTNVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAVHLRDYMQMVDKNRSMYQRSTRKPATTP 111          
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A024UUS1_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUS1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.040e-15
Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = 0
Query:   22 RTLAILIQSMRGNRVVVEMKNDVEISGILEET-DGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTTP 126
            R++ +L+QSM G  V +E+K +  + G +EE  +GNM++ +  V+ TS QG++  +D   V GKMI +VH+PD+++  ++L  +M  + K+   Y+R+  K  T P
Sbjct:    6 RSVVLLLQSMLGMDVKIELKTEYTLEGRVEEVGEGNMDVRLTGVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAAHLRDYMHLVDKNKNLYQRSTRKPPTKP 111          
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: UPI001E1D8F86 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D8F86)

HSP 1 Score: 75.1 bits (183), Expect = 9.030e-15
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0
Query:   23 TLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYR 116
            ++  L++ + G R  VEM+++ E++G+++  DG MN+SM DV + S  G  KK D   V GK IRYVHIPD+++  S +   ++ M   TA  R
Sbjct:   13 SMLCLLKVVEGKRTTVEMRDEKEVTGVIKHVDGYMNISMEDVVFKSLTGK-KKFDKFFVNGKTIRYVHIPDEINMKSAMEAKLKEMCTYTASMR 105          
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A0L8G4N7_OCTBM (Sm domain-containing protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8G4N7_OCTBM)

HSP 1 Score: 74.3 bits (181), Expect = 1.890e-14
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   11 SAASRRTNPLERTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSV--KKMDVALVQGKMIRYVHIPDKVDAISNL 101
            + +SR T  ++ +L IL+Q++ G +  V+++N+  + G+L   D  MNL++ DVRY SA   V  K  D   +QG+ +R+VHIPD VD IS++
Sbjct:    2 ATSSRETALIKNSLIILLQAIVGKQTTVDLRNENSVEGLLLHVDAFMNLTLEDVRYISANDKVGDKYFDKLFIQGREVRFVHIPDDVDIISSI 94          
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: UPI0006C9B558 (U7 snRNA-associated Sm-like protein LSm10 isoform X1 n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C9B558)

HSP 1 Score: 71.2 bits (173), Expect = 9.470e-14
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 0
Query:   20 LERTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIP 92
            L  TLAIL++++ G R  VE++N+  I G++E+TDG MN++M D  +T  +G   K ++  VQ + IR+VH+P
Sbjct:   14 LYNTLAILLKAVEGERTTVELRNEASICGVVEQTDGFMNINMKDCLFTDPRGDSYKYEIFFVQARNIRHVHVP 86          
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A5D6XV54_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV54_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.010e-13
Identity = 36/104 (34.62%), Postives = 62/104 (59.62%), Query Frame = 0
Query:   22 RTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTT 125
            R+L +L++S+ G RV V++KND  + G++ E   +M+ +MVD   T   G++ +MD   V G+ I YVHIPD+++   +L  + R + +S   Y R    + +T
Sbjct:   42 RSLLLLLKSLVGLRVRVDLKNDATVEGVVAEVVHDMDFTMVDACETKPNGAMVRMDEVFVMGRTILYVHIPDRINLTQHLQQYTRMVRQSATMYTRTKRSAAST 145          
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A6G0XYB6_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYB6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.530e-13
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 0
Query:   15 RRTNPLERTLAILIQSMRGNRVVVEMKNDVEISGILEET-DGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDK---VDAISNLHI 103
            +RTN   R++ IL+QSM G  V +E+K +  + GI+EE   G M+L M +V+ TS QG    +D   V GKMI YVH+PD+   +DA +  H+
Sbjct:    4 KRTN---RSIIILLQSMLGMEVRIELKTEFIVEGIVEEVGQGTMDLRMSNVKSTSPQGVTMHLDEMFVMGKMILYVHLPDRYDLMDATTQAHV 93          
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Match: A0A8K1CIL4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIL4_PYTOL)

HSP 1 Score: 70.5 bits (171), Expect = 5.010e-13
Identity = 34/105 (32.38%), Postives = 63/105 (60.00%), Query Frame = 0
Query:   22 RTLAILIQSMRGNRVVVEMKNDVEISGILEETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISNLHIHMRAMAKSTADYRRNMLKSKTTP 126
            R+L +L++S+ G RV +++KND  + GI+EE   +M+ +++D   T   G   +++   V GK + YVHIPD+++   +L  + R + +S   Y+R+  K+   P
Sbjct:   20 RSLLLLLKSLAGLRVRIDLKNDCVVEGIVEEVLHDMDFTLLDACETKPNGRTVRLEEVFVMGKTVLYVHIPDRINISQHLQQYNRMIRQSQDMYKRDKRKAPLPP 124          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig97.64.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5S1_ECTSI5.070e-4562.32Putaive LSm10 protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JYY5_9PHAE1.310e-3577.91Sm domain-containing protein n=1 Tax=Ectocarpus sp... [more]
W4H8K5_9STRA9.510e-1736.79Sm domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A024UUS1_9STRA3.040e-1535.85Sm domain-containing protein n=1 Tax=Aphanomyces i... [more]
UPI001E1D8F869.030e-1539.36U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]
A0A0L8G4N7_OCTBM1.890e-1439.78Sm domain-containing protein n=1 Tax=Octopus bimac... [more]
UPI0006C9B5589.470e-1442.47U7 snRNA-associated Sm-like protein LSm10 isoform ... [more]
A0A5D6XV54_9STRA1.010e-1334.62Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A6G0XYB6_9STRA4.530e-1343.01Sm domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A8K1CIL4_PYTOL5.010e-1332.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 26..91
e-value: 5.9E-8
score: 42.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 28..90
e-value: 1.3E-11
score: 44.0
NoneNo IPR availableGENE3D2.30.30.100coord: 25..99
e-value: 4.2E-24
score: 85.9
NoneNo IPR availablePANTHERPTHR21196U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10coord: 16..124
NoneNo IPR availableCDDcd01733LSm10coord: 20..92
e-value: 4.10111E-25
score: 88.751
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 27..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig97contigA-nodosum_M_contig97:828164..837980 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig97.64.1mRNA_A-nodosum_M_contig97.64.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig97 828091..838388 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig97.64.1 ID=prot_A-nodosum_M_contig97.64.1|Name=mRNA_A-nodosum_M_contig97.64.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=128bp
MEQDTRGSRPSAASRRTNPLERTLAILIQSMRGNRVVVEMKNDVEISGIL
EETDGNMNLSMVDVRYTSAQGSVKKMDVALVQGKMIRYVHIPDKVDAISN
LHIHMRAMAKSTADYRRNMLKSKTTPK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf