mRNA_A-nodosum_M_contig9666.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9666.1.1
Unique NamemRNA_A-nodosum_M_contig9666.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 75.1 bits (183), Expect = 8.690e-14
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVF 246
            M+A KD ++ H DV+ A+L  D++EEIY      F    G V R+ KA+YGL QA RCWN    + +  ++F  +KSDPC+F
Sbjct:  322 MAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIF 403
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 75.1 bits (183), Expect = 8.910e-14
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVF 246
            M+A KD ++ H DV+ A+L  D++EEIY      F    G V R+ KA+YGL QA RCWN    + +  ++F  +KSDPC+F
Sbjct:  927 MAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIF 1008
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A5E8BZJ0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZJ0_9ASCO)

HSP 1 Score: 70.5 bits (171), Expect = 2.670e-12
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFL--GAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVFRKVVDGK 267
            +SAAK+ E+ H DV+ AFL  D++E+IY        +    G V ++NK++YGL QA  CWN    D + A+ ++ AK +PC+F K+ +GK
Sbjct:   12 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGK 101
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A6H5FUQ5_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FUQ5_9HEMI)

HSP 1 Score: 70.9 bits (172), Expect = 2.690e-12
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVFRKVVDGK 267
            ++AA++  +  FDV  AFL  ++DE IY    + F +  G V R+ +++YGL QA RCWN  F D ++ I    +++DPC+F +  DGK
Sbjct:  431 VAAAENLHMMQFDVSTAFLYGNLDETIYMQQPDGFNDETGRVCRLTRSLYGLKQAPRCWNKRFVDYLSKIGLHASEADPCLFIREKDGK 519
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A6H5GIQ8_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GIQ8_9HEMI)

HSP 1 Score: 70.9 bits (172), Expect = 2.740e-12
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVFRKVVDGK 267
            ++AA++  +  FDV  AFL  ++DE IY    + F +  G V R+ +++YGL QA RCWN  F D ++ I    +++DPC+F +  DGK
Sbjct:  932 VAAAENLHMMQFDVSTAFLYGNLDETIYMQQPDGFNDETGRVCRLTRSLYGLKQAPRCWNKRFVDYLSKIGLHASEADPCLFIREKDGK 1020
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A5E8C5S9_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C5S9_9ASCO)

HSP 1 Score: 70.5 bits (171), Expect = 3.550e-12
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFL--GAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVFRKVVDGK 267
            +SAAK+ E+ H DV+ AFL  D++E+IY        +    G V ++NK++YGL QA  CWN    D + A+ ++ AK +PC+F K+ +GK
Sbjct:   44 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGK 133
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A5E8C4X9_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4X9_9ASCO)

HSP 1 Score: 70.5 bits (171), Expect = 3.550e-12
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFL--GAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVFRKVVDGK 267
            +SAAK+ E+ H DV+ AFL  D++E+IY        +    G V ++NK++YGL QA  CWN    D + A+ ++ AK +PC+F K+ +GK
Sbjct:  160 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGK 249
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A5E8C1Z7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1Z7_9ASCO)

HSP 1 Score: 70.5 bits (171), Expect = 3.750e-12
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFL--GAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVFRKVVDGK 267
            +SAAK+ E+ H DV+ AFL  D++E+IY        +    G V ++NK++YGL QA  CWN    D + A+ ++ AK +PC+F K+ +GK
Sbjct:  678 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGK 767
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A5E8BZM0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZM0_9ASCO)

HSP 1 Score: 70.5 bits (171), Expect = 3.750e-12
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFL--GAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVFRKVVDGK 267
            +SAAK+ E+ H DV+ AFL  D++E+IY        +    G V ++NK++YGL QA  CWN    D + A+ ++ AK +PC+F K+ +GK
Sbjct:  991 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGK 1080
[Close]
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A5E8C1N6_9ASCO (Integrase catalytic domain-containing protein n=3 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1N6_9ASCO)

HSP 1 Score: 70.5 bits (171), Expect = 3.800e-12
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFL--GAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE*AKSDPCVFRKVVDGK 267
            +SAAK+ E+ H DV+ AFL  D++E+IY        +    G V ++NK++YGL QA  CWN    D + A+ ++ AK +PC+F K+ +GK
Sbjct: 1971 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGK 2060
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GI29_9HEMI8.690e-1443.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI8.910e-1443.90Integrase catalytic domain-containing protein (Fra... [more]
A0A5E8BZJ0_9ASCO2.670e-1240.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5FUQ5_9HEMI2.690e-1239.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5GIQ8_9HEMI2.740e-1239.33Uncharacterized protein (Fragment) n=2 Tax=Nesidio... [more]
A0A5E8C5S9_9ASCO3.550e-1240.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4X9_9ASCO3.550e-1240.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C1Z7_9ASCO3.750e-1240.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8BZM0_9ASCO3.750e-1240.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C1N6_9ASCO3.800e-1240.66Integrase catalytic domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9666contigA-nodosum_M_contig9666:3873..4148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010501854.1
PFAMsRVT_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve
Model size276
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae
DescriptionCysteine-rich RLK (RECEPTOR-like protein kinase) 8
Cds size222
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870482.9034705-UTR-A-nodosum_M_contig9666:3872..39261680870482.9034705-UTR-A-nodosum_M_contig9666:3872..3926Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9666 3873..3926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870482.9191115-CDS-A-nodosum_M_contig9666:3926..41481680870482.9191115-CDS-A-nodosum_M_contig9666:3926..4148Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9666 3927..4148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9666.1.1prot_A-nodosum_M_contig9666.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9666 3927..4148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9666.1.1

>prot_A-nodosum_M_contig9666.1.1 ID=prot_A-nodosum_M_contig9666.1.1|Name=mRNA_A-nodosum_M_contig9666.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp
MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIY
GLVQARRCWNNNFCDDMTAIRFE*
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mRNA from alignment at A-nodosum_M_contig9666:3873..4148-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9666.1.1 ID=mRNA_A-nodosum_M_contig9666.1.1|Name=mRNA_A-nodosum_M_contig9666.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at A-nodosum_M_contig9666:3873..4148- (Ascophyllum nodosum dioecious)
ATGTCAGCGGCCAAGGACGGAGAGCTGCGCCATTTCGACGTGGAGCAGGC
ATTTTTGAAGGCGGATATTGACGAAGAAATATACACTGATATCCTCGAGG
AGTTCCAGAATTTTTTGGGGGCAGTGGGACGGGTGAACAAGGCCATCTAC
GGACTCGTACAGGCGAGGAGATGCTGGAACAACAATTTCTGTGACGACAT
GACGGCGATTCGATTTGAGTAGGCTAAATCGGATCCGTGTGTGTTCCGCA
AGGTCGTTGACGGCAAGGCGGAGGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9666:3873..4148-

>mRNA_A-nodosum_M_contig9666.1.1 ID=mRNA_A-nodosum_M_contig9666.1.1|Name=mRNA_A-nodosum_M_contig9666.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig9666:3873..4148- (Ascophyllum nodosum dioecious)
ATGTCAGCGGCCAAGGACGGAGAGCTGCGCCATTTCGACGTGGAGCAGGC
ATTTTTGAAGGCGGATATTGACGAAGAAATATACACTGATATCCTCGAGG
AGTTCCAGAATTTTTTGGGGGCAGTGGGACGGGTGAACAAGGCCATCTAC
GGACTCGTACAGGCGAGGAGATGCTGGAACAACAATTTCTGTGACGACAT
GACGGCGATTCGATTTGAGTAG
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