prot_A-nodosum_M_contig9666.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9666.1.1
Unique Nameprot_A-nodosum_M_contig9666.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length74
Homology
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 61.2 bits (147), Expect = 3.220e-9
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 0
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRF 72
            M+A KD ++ H DV+ A+L  D++EEIY      F    G V R+ KA+YGL QA RCWN    + +  ++F
Sbjct:  322 MAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKF 393          
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 61.2 bits (147), Expect = 3.270e-9
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 0
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRF 72
            M+A KD ++ H DV+ A+L  D++EEIY      F    G V R+ KA+YGL QA RCWN    + +  ++F
Sbjct:  927 MAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKF 998          
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: UPI001D058D1D (reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D058D1D)

HSP 1 Score: 56.6 bits (135), Expect = 2.700e-8
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCW 59
            ++AA+D E+   DV+ AFL  DIDEE+Y +  E F++  G V R+ KAIYGL QA R W
Sbjct:   30 IAAAEDLEIEQMDVKTAFLYGDIDEEVYLEQPEGFEDGTGRVCRLKKAIYGLKQAPRIW 88          
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A5E8BZJ0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZJ0_9ASCO)

HSP 1 Score: 56.6 bits (135), Expect = 1.270e-7
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 0
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFL--GAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE 73
            +SAAK+ E+ H DV+ AFL  D++E+IY        +    G V ++NK++YGL QA  CWN    D + A+ ++
Sbjct:   12 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 86          
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A5E8C5S9_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C5S9_9ASCO)

HSP 1 Score: 56.6 bits (135), Expect = 1.350e-7
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 0
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFL--GAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE 73
            +SAAK+ E+ H DV+ AFL  D++E+IY        +    G V ++NK++YGL QA  CWN    D + A+ ++
Sbjct:   44 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 118          
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A5E8C4X9_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4X9_9ASCO)

HSP 1 Score: 56.6 bits (135), Expect = 1.350e-7
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 0
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFL--GAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE 73
            +SAAK+ E+ H DV+ AFL  D++E+IY        +    G V ++NK++YGL QA  CWN    D + A+ ++
Sbjct:  160 LSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYK 234          
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A085MTW9_9BILA (Integrase catalytic domain-containing protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MTW9_9BILA)

HSP 1 Score: 56.6 bits (135), Expect = 1.370e-7
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 0
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRFE 73
            +S  +D  LR FDV+ AFL + ++EE+YT   E F +  G V ++ +++YGL QA RCWN  F + +   + E
Sbjct:  324 VSGDEDLVLRQFDVKTAFLYSSLEEEVYTKQPEGFDDGSGRVCKLQRSLYGLKQAPRCWNTRFKEFIRKQKLE 396          
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: UPI001D04328D (reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D04328D)

HSP 1 Score: 56.6 bits (135), Expect = 1.380e-7
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCW 59
            ++AA+D E+   DV+ AFL  DIDEE+Y +  E F++  G V R+ KAIYGL QA R W
Sbjct:  515 IAAAEDLEIEQMDVKTAFLYGDIDEEVYLEQPEGFEDGTGRVCRLKKAIYGLKQAPRIW 573          
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: A0A224XJ98_9HEMI (Putative copia-like retrotransposable element (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XJ98_9HEMI)

HSP 1 Score: 56.6 bits (135), Expect = 1.380e-7
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 0
Query:    4 AKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCWNNNFCDDMTAIRF 72
            +K+ E++  DV+ AFL   +DEEIY  + E      G V R+ KA+YGL Q+ RCWNN F   + +I F
Sbjct:  530 SKNWEVQQLDVKTAFLNGTLDEEIYIRLPEGPYEEKGKVRRLCKALYGLKQSSRCWNNEFTKYIMSIGF 598          
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Match: UPI001D05617A (reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D05617A)

HSP 1 Score: 56.6 bits (135), Expect = 1.390e-7
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    1 MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIYGLVQARRCW 59
            ++AA+D E+   DV+ AFL  DIDEE+Y +  E F++  G V R+ KAIYGL QA R W
Sbjct:  695 IAAAEDLEIEQMDVKTAFLYGDIDEEVYLEQPEGFEDGTGRVCRLKKAIYGLKQAPRIW 753          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9666.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GI29_9HEMI3.220e-941.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI3.270e-941.67Integrase catalytic domain-containing protein (Fra... [more]
UPI001D058D1D2.700e-850.85reverse transcriptase (RNA-dependent DNA polymeras... [more]
A0A5E8BZJ0_9ASCO1.270e-738.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C5S9_9ASCO1.350e-738.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4X9_9ASCO1.350e-738.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A085MTW9_9BILA1.370e-739.73Integrase catalytic domain-containing protein n=1 ... [more]
UPI001D04328D1.380e-750.85reverse transcriptase (RNA-dependent DNA polymeras... [more]
A0A224XJ98_9HEMI1.380e-743.48Putative copia-like retrotransposable element (Fra... [more]
UPI001D05617A1.390e-750.85reverse transcriptase (RNA-dependent DNA polymeras... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..73
e-value: 1.0E-11
score: 45.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9666contigA-nodosum_M_contig9666:3927..4148 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9666.1.1mRNA_A-nodosum_M_contig9666.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9666 3873..4148 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9666.1.1 ID=prot_A-nodosum_M_contig9666.1.1|Name=mRNA_A-nodosum_M_contig9666.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp
MSAAKDGELRHFDVEQAFLKADIDEEIYTDILEEFQNFLGAVGRVNKAIY
GLVQARRCWNNNFCDDMTAIRFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2