mRNA_A-nodosum_M_contig9638.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE) HSP 1 Score: 164 bits (415), Expect = 7.590e-45 Identity = 75/116 (64.66%), Postives = 84/116 (72.41%), Query Frame = 2
Query: 11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTY--GPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
E+CA G RN WRCGFDRL D LY GDVG +E I +ECGNNYGW RFEGSRC E D PC+ VDRS FT+P+FEYCH DYDS+ + E E+TGG D CGDR VVGN VIG
Sbjct: 249 EVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTYPLFEYCHPDYDSTDADEQEFTGGADTCGDRFVVGNCVIG 364
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI) HSP 1 Score: 163 bits (413), Expect = 2.640e-43 Identity = 74/116 (63.79%), Postives = 81/116 (69.83%), Query Frame = 2
Query: 5 LPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTYGPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
LPEICA+GFRN WRC FDR TDELY GDVG +E I VECGNNYGW RFEGSRC E GPC D DRS FTFP++EYCH DY S + E ++ G DICG R V G VIG
Sbjct: 307 LPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRCQEAQESRDGPCLDTDRSAFTFPIYEYCHPDYSSDDADEADFVAGVDICGTRMVSGTAVIG 422
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI) HSP 1 Score: 162 bits (411), Expect = 1.470e-42 Identity = 74/116 (63.79%), Postives = 86/116 (74.14%), Query Frame = 2
Query: 11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTY--GPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
EICA G RN WRC FDRL D+LY GDVG+ +E I +ECGNNYGW RFEGSRC E D PC+ VDRSDFT+P+FEYCH D+DS+ + E E+TGG D CG+R VVGN VIG
Sbjct: 290 EICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSDFTYPLFEYCHPDFDSTDADEQEFTGGADTCGNRFVVGNCVIG 405
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.870e-41 Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = 2
Query: 5 LPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTE-YS*DTYGP-CEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
L EICA GFRN WRC FDR TD+LY GDVG +E I VECGNNYGW RFEGSRC E + Y P C+ VDRS FTFP++EYCH DY S +DE+T G DICGDR ++GN VIG
Sbjct: 307 LDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVENNEYNPPCDGVDRSGFTFPLYEYCHPDYSSV--GDDEFTAGVDICGDRVLLGNAVIG 422
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI) HSP 1 Score: 154 bits (390), Expect = 4.820e-40 Identity = 73/118 (61.86%), Postives = 84/118 (71.19%), Query Frame = 2
Query: 5 LPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DT-YGP-CEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
L EICA GFRN WRC FDR D LY GDVG +E I VECGNNYGW RFEGSRC E D + P C+ + RS FTFP++EYCH DY S+ +DE+T GNDICGDR ++GN VIG
Sbjct: 370 LDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQST--GDDEFTAGNDICGDRVLLGNAVIG 485
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI) HSP 1 Score: 145 bits (367), Expect = 2.700e-37 Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 2
Query: 11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTY--GPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSV 331
EICA G RN WRC FDRL D+LY GDVG+ +E I +ECGNNYGW RFEGSRC E D PC+ + RS FTFP+FEYCH D+DS+ + E ++TGG D CG+R V
Sbjct: 210 EICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGISRSGFTFPLFEYCHPDFDSTDADEQKFTGGADTCGNRFV 318
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI) HSP 1 Score: 135 bits (340), Expect = 5.170e-33 Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 2
Query: 2 ELPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTE-YS*DTYGPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
E PEICA G RN RC FD TDELY GDVG++ +E + +ECG +YGW FEGSRC + + G C +DR+D+ FPVFEYCHVDYDSS ++E+ D CGDR+V G +VIG
Sbjct: 379 EKPEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRCNDGFEGYDGGECSGLDRADYAFPVFEYCHVDYDSS---QEEF----DACGDRTVTGLSVIG 489
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI) HSP 1 Score: 129 bits (323), Expect = 1.070e-31 Identity = 63/106 (59.43%), Postives = 69/106 (65.09%), Query Frame = 2
Query: 11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTY--GPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGD 322
EICA G RN WRC FDRL D+LY GDVG+ E I VECGNNYGW RFEGSRC E D PC+ VDRS FTFP+FEYCH D+DS+ DIC D
Sbjct: 299 EICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTFPLFEYCHPDFDST-----------DICAD 393
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE) HSP 1 Score: 122 bits (307), Expect = 1.340e-28 Identity = 61/118 (51.69%), Postives = 72/118 (61.02%), Query Frame = 2
Query: 2 ELPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTYGP-CEDVDRSDFTFPVFEYCHVDYDSSPSSEDEY-TGGNDICGDRSVVGNTVI 349
E+ G RN +RC FDRL D+LY GDVG +ESI K+ECGNNYGW +FEG RC + D + CE +DRS FTFP F YCH D+ P Y ICGDRSV+G VI
Sbjct: 259 EMGSGDKEGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEFNYCHPDF--YPVDHPSYIVSDQSICGDRSVIGTAVI 374
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.030e-22 Identity = 48/79 (60.76%), Postives = 56/79 (70.89%), Query Frame = 2
Query: 11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTYGP-CEDVDRSDFTFPVF 244
EICA G RN +RC FDRL D+LY GDVG +ESI K+ECGNNYGW +FEG RC + D + CE +DRS FTFP F
Sbjct: 365 EICAQGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEF 443 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9638.4.1 >prot_A-nodosum_M_contig9638.4.1 ID=prot_A-nodosum_M_contig9638.4.1|Name=mRNA_A-nodosum_M_contig9638.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp MVSATTGGVDSTVLLTSSTLGMSAAMASRASTKSSVGITTVGCGSRDRDAback to top mRNA from alignment at A-nodosum_M_contig9638:8016..8796+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9638.4.1 ID=mRNA_A-nodosum_M_contig9638.4.1|Name=mRNA_A-nodosum_M_contig9638.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=781bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:8016..8796+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9638:8016..8796+ >mRNA_A-nodosum_M_contig9638.4.1 ID=mRNA_A-nodosum_M_contig9638.4.1|Name=mRNA_A-nodosum_M_contig9638.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:8016..8796+ (Ascophyllum nodosum dioecious)back to top |