mRNA_A-nodosum_M_contig9638.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9638.4.1
Unique NamemRNA_A-nodosum_M_contig9638.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 7.590e-45
Identity = 75/116 (64.66%), Postives = 84/116 (72.41%), Query Frame = 2
Query:   11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTY--GPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
            E+CA G RN WRCGFDRL D LY GDVG   +E I  +ECGNNYGW RFEGSRC E   D     PC+ VDRS FT+P+FEYCH DYDS+ + E E+TGG D CGDR VVGN VIG
Sbjct:  249 EVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTYPLFEYCHPDYDSTDADEQEFTGGADTCGDRFVVGNCVIG 364          
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.640e-43
Identity = 74/116 (63.79%), Postives = 81/116 (69.83%), Query Frame = 2
Query:    5 LPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTYGPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
            LPEICA+GFRN WRC FDR TDELY GDVG   +E I  VECGNNYGW RFEGSRC E      GPC D DRS FTFP++EYCH DY S  + E ++  G DICG R V G  VIG
Sbjct:  307 LPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRCQEAQESRDGPCLDTDRSAFTFPIYEYCHPDYSSDDADEADFVAGVDICGTRMVSGTAVIG 422          
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.470e-42
Identity = 74/116 (63.79%), Postives = 86/116 (74.14%), Query Frame = 2
Query:   11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTY--GPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
            EICA G RN WRC FDRL D+LY GDVG+  +E I  +ECGNNYGW RFEGSRC E   D     PC+ VDRSDFT+P+FEYCH D+DS+ + E E+TGG D CG+R VVGN VIG
Sbjct:  290 EICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSDFTYPLFEYCHPDFDSTDADEQEFTGGADTCGNRFVVGNCVIG 405          
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.870e-41
Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = 2
Query:    5 LPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTE-YS*DTYGP-CEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
            L EICA GFRN WRC FDR TD+LY GDVG   +E I  VECGNNYGW RFEGSRC E    + Y P C+ VDRS FTFP++EYCH DY S    +DE+T G DICGDR ++GN VIG
Sbjct:  307 LDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVENNEYNPPCDGVDRSGFTFPLYEYCHPDYSSV--GDDEFTAGVDICGDRVLLGNAVIG 422          
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 4.820e-40
Identity = 73/118 (61.86%), Postives = 84/118 (71.19%), Query Frame = 2
Query:    5 LPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DT-YGP-CEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
            L EICA GFRN WRC FDR  D LY GDVG   +E I  VECGNNYGW RFEGSRC E   D  + P C+ + RS FTFP++EYCH DY S+   +DE+T GNDICGDR ++GN VIG
Sbjct:  370 LDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQST--GDDEFTAGNDICGDRVLLGNAVIG 485          
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.700e-37
Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 2
Query:   11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTY--GPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSV 331
            EICA G RN WRC FDRL D+LY GDVG+  +E I  +ECGNNYGW RFEGSRC E   D     PC+ + RS FTFP+FEYCH D+DS+ + E ++TGG D CG+R V
Sbjct:  210 EICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGISRSGFTFPLFEYCHPDFDSTDADEQKFTGGADTCGNRFV 318          
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 5.170e-33
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 2
Query:    2 ELPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTE-YS*DTYGPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGDRSVVGNTVIG 352
            E PEICA G RN  RC FD  TDELY GDVG++ +E +  +ECG +YGW  FEGSRC + +     G C  +DR+D+ FPVFEYCHVDYDSS   ++E+    D CGDR+V G +VIG
Sbjct:  379 EKPEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRCNDGFEGYDGGECSGLDRADYAFPVFEYCHVDYDSS---QEEF----DACGDRTVTGLSVIG 489          
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.070e-31
Identity = 63/106 (59.43%), Postives = 69/106 (65.09%), Query Frame = 2
Query:   11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTY--GPCEDVDRSDFTFPVFEYCHVDYDSSPSSEDEYTGGNDICGD 322
            EICA G RN WRC FDRL D+LY GDVG+   E I  VECGNNYGW RFEGSRC E   D     PC+ VDRS FTFP+FEYCH D+DS+           DIC D
Sbjct:  299 EICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTFPLFEYCHPDFDST-----------DICAD 393          
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.340e-28
Identity = 61/118 (51.69%), Postives = 72/118 (61.02%), Query Frame = 2
Query:    2 ELPEICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTYGP-CEDVDRSDFTFPVFEYCHVDYDSSPSSEDEY-TGGNDICGDRSVVGNTVI 349
            E+      G RN +RC FDRL D+LY GDVG   +ESI K+ECGNNYGW +FEG RC +   D +   CE +DRS FTFP F YCH D+   P     Y      ICGDRSV+G  VI
Sbjct:  259 EMGSGDKEGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEFNYCHPDF--YPVDHPSYIVSDQSICGDRSVIGTAVI 374          
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.030e-22
Identity = 48/79 (60.76%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   11 EICANGFRNNWRCGFDRLTDELYSGDVGRNGIESIYKVECGNNYGWVRFEGSRCTEYS*DTYGP-CEDVDRSDFTFPVF 244
            EICA G RN +RC FDRL D+LY GDVG   +ESI K+ECGNNYGW +FEG RC +   D +   CE +DRS FTFP F
Sbjct:  365 EICAQGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEF 443          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9638.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT40_9PHAE7.590e-4564.66GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G6T7_ECTSI2.640e-4363.79WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G961_ECTSI1.470e-4263.79Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5JZF5_9PHAE1.870e-4163.56GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4P3_ECTSI4.820e-4061.86Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G960_ECTSI2.700e-3759.63Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7FJP1_ECTSI5.170e-3355.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G962_ECTSI1.070e-3159.43GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KS07_9PHAE1.340e-2851.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJN8_ECTSI1.030e-2260.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9638contigA-nodosum_M_contig9638:8016..8796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size648
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870480.4948945-UTR-A-nodosum_M_contig9638:8015..80381680870480.4948945-UTR-A-nodosum_M_contig9638:8015..8038Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9638 8016..8038 +
1680870480.5331364-UTR-A-nodosum_M_contig9638:8513..87961680870480.5331364-UTR-A-nodosum_M_contig9638:8513..8796Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9638 8514..8796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870480.5083525-CDS-A-nodosum_M_contig9638:8038..81411680870480.5083525-CDS-A-nodosum_M_contig9638:8038..8141Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9638 8039..8141 +
1680870480.5206385-CDS-A-nodosum_M_contig9638:8274..85131680870480.5206385-CDS-A-nodosum_M_contig9638:8274..8513Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9638 8275..8513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9638.4.1prot_A-nodosum_M_contig9638.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9638 8039..8513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9638.4.1

>prot_A-nodosum_M_contig9638.4.1 ID=prot_A-nodosum_M_contig9638.4.1|Name=mRNA_A-nodosum_M_contig9638.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp
MVSATTGGVDSTVLLTSSTLGMSAAMASRASTKSSVGITTVGCGSRDRDA
RNTRRIPTALAKMLTVQTSLSRYSSTATLITTLAHLPRMSTRVATTSVGT
GVLLGTRSSVSLL*
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mRNA from alignment at A-nodosum_M_contig9638:8016..8796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9638.4.1 ID=mRNA_A-nodosum_M_contig9638.4.1|Name=mRNA_A-nodosum_M_contig9638.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=781bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:8016..8796+ (Ascophyllum nodosum dioecious)
AGAATTGCCCGAGATCTGCGCCAATGGTTTCCGCAACAACTGGAGGTGTG GATTCGACCGTCTTACTGACGAGCTCTACTCTGGGGATGTCGGCCGCAAT GGCATCGAGAGCATCTACAAAGTCGAGTGAGTAACGGGGCGCGAAGGTTT GCTTGTCGTGCCCCCCCCCCCCTCTATGCACCGGACCTAAACATGGCCCT AGCCCTGCAAACCCTTTCCGGTTGAAAAACACGGATGGATGGAAAAAATG TATTGGCAGGTGTGGGAATAACTACGGTTGGGTGCGGTTCGAGGGATCGC GATGCACGGAATACTCGTAGGATACCTACGGCCCTTGCGAAGATGTTGAC CGTTCAGACTTCACTTTCCCGGTATTCGAGTACTGCCACGTTGATTACGA CTCTAGCCCATCTTCCGAGGATGAGTACACGGGTGGCAACGACATCTGTG GGGACAGGAGTGTTGTTGGGAACACGGTCATCGGTGAGCTTGCTATGATA CTGACTTGATTGGTCGGACGTGTCTGCGCCCTCTCGAACTACATTCGTAG GCATTGACCCAGAACTACGTAAAATGGCAATCGCTCGAAACTATCAAATT CGGTTTTCGCCCTGTCATAGAGGTGCGTTTCATTTAGAAACAATATATCT TCGGCGGTCATGGGACGCGATACCGGTTGCCACTCAGTATTCGCCTCACT ATGGGCTGACTTCCGATATTCCCCTATAGGAGGATATGTCTACCGCGGAC AAGCGTACGCTGACCTGATCTATGGCGCGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9638:8016..8796+

>mRNA_A-nodosum_M_contig9638.4.1 ID=mRNA_A-nodosum_M_contig9638.4.1|Name=mRNA_A-nodosum_M_contig9638.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:8016..8796+ (Ascophyllum nodosum dioecious)
ATGGTTTCCGCAACAACTGGAGGTGTGGATTCGACCGTCTTACTGACGAG
CTCTACTCTGGGGATGTCGGCCGCAATGGCATCGAGAGCATCTACAAAGT
CGAGTGTGGGAATAACTACGGTTGGGTGCGGTTCGAGGGATCGCGATGCA
CGGAATACTCGTAGGATACCTACGGCCCTTGCGAAGATGTTGACCGTTCA
GACTTCACTTTCCCGGTATTCGAGTACTGCCACGTTGATTACGACTCTAG
CCCATCTTCCGAGGATGAGTACACGGGTGGCAACGACATCTGTGGGGACA
GGAGTGTTGTTGGGAACACGGTCATCGGTGAGCTTGCTATGA
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