mRNA_A-nodosum_M_contig96.20.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: D7FHP2_ECTSI (40S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP2_ECTSI) HSP 1 Score: 529 bits (1363), Expect = 3.420e-187 Identity = 285/353 (80.74%), Postives = 294/353 (83.29%), Query Frame = 1
Query: 43 MASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAA---VSMEYQAPPAQATGLGGGWDADPAAGGEEAIPVEAAVPV-EAVPADAG---------------AXXXXXXAPQQPAVDDGGWGDASGAAAGGW 1044
MASS LPACL AKEEDI KML+AQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDR WDVPVDLFFYREPEELEKAEEAQAPFQ+P A AA GWGA+P+ AAPTPMEGFAAVDPAA V +EYQAPP QA +GGGWDA PA G E+ +PVE PV EA+P DAG A APQQ GGWG A A GGW
Sbjct: 1 MASSSLPACLHAKEEDIHKMLAAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMAGGAAPTPMEGFAAVDPAAAAPVPVEYQAPP-QAAAMGGGWDAAPATGAEQGMPVEQVQPVAEAMPVDAGVPPAAGGGWDAQQAQAPVQQAQAPQQ--AQGGGWGGAPAQAGGGW 350
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A7S4DAK2_HETAK (40S ribosomal protein SA n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAK2_HETAK) HSP 1 Score: 394 bits (1013), Expect = 3.180e-134 Identity = 207/275 (75.27%), Postives = 228/275 (82.91%), Query Frame = 1
Query: 58 LPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQATGLGGGWDADP 882
LP LQAKEEDIQKML+ Q HIGTRNS+++M DYIW RRQDG+H++N+GKTWEK+VLAARIIVAIENP+DVVAISARPYGQRAVLKFAQYTG SIAGRFTPGTFTNQITKQFREPRLL+ITDPR D+QAVKEASYVNVPVIAFCDSDSPL NVDVAIP+NNKGKLSIGLLYWLLAREVLRMRGTI R PWDVPVDLFFYR+PEELEKA+EAQA + Q A GWGA P +AAP A + P M+Y AP A G++A P
Sbjct: 30 LPPILQAKEEDIQKMLAGQCHIGTRNSENKMADYIWTRRQDGVHVMNLGKTWEKIVLAARIIVAIENPEDVVAISARPYGQRAVLKFAQYTGANSIAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQAVKEASYVNVPVIAFCDSDSPLPNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTISRDAPWDVPVDLFFYRDPEELEKADEAQAAAYEEQVPA--GWGAAP--EAAAPA-----AEMAP----MDYVAPDAXXXXAAAGFEAPP 291
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A836CJ71_9STRA (40S ribosomal protein SA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ71_9STRA) HSP 1 Score: 393 bits (1009), Expect = 6.880e-134 Identity = 206/264 (78.03%), Postives = 220/264 (83.33%), Query Frame = 1
Query: 43 MASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAP----TPMEGFAAVDPAAVSM 822
MASS LPA L KEEDIQKMLSAQ HIGTRNSD QM+DYIWRRR DGIHILNIGKTWEKLVLAARII AIENPQDV+AISARPYGQRAVLKFAQYTG SIAGRFTPGTFTNQITKQFREPRLLIITDPR DAQAVKE+SYVNVPVIAFCDSDSPL VDVAIP+NNKGKLSIGLLYW+LAREVLR+RGT+ R PWDVPVDLFF+REPEELEK E Q F++P A A GW A + +AA P + +V PA M
Sbjct: 1 MASSSLPAVLAPKEEDIQKMLSAQAHIGTRNSDDQMKDYIWRRRHDGIHILNIGKTWEKLVLAARIIAAIENPQDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQAVKESSYVNVPVIAFCDSDSPLNYVDVAIPANNKGKLSIGLLYWMLAREVLRLRGTVPRDAPWDVPVDLFFHREPEELEKTEAEQ--FEEPAAPTA-GWDATAGMGAAAAGDYAVPTQPLTSVTPAEAEM 261
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: F0Y9V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V2_AURAN) HSP 1 Score: 375 bits (962), Expect = 3.110e-128 Identity = 179/211 (84.83%), Postives = 198/211 (93.84%), Query Frame = 1
Query: 70 LQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQA 702
L KEEDIQKMLSAQ HIGTRNSD M++YIWRRRQDGIHI+N+GKTWEKL+LAAR++ AIENPQD++AISARPYGQRAVLKFAQYTG SIAGRFTPGTFTNQITKQF+EPR+L+ITDPR D+QAVKEASYVN+PVIAFCDSDSP Q+VDVAIPSNNKGKLSIGLLYWLLARE+LRMRGT+ R PWDVPVDLFFYR+PEELEKA+EAQA
Sbjct: 2 LAPKEEDIQKMLSAQCHIGTRNSDHMMEEYIWRRRQDGIHIINVGKTWEKLMLAARVLTAIENPQDIIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFKEPRILVITDPRTDSQAVKEASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEKADEAQA 212
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A8J2SYU6_9STRA (40S ribosomal protein SA n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYU6_9STRA) HSP 1 Score: 379 bits (972), Expect = 1.250e-127 Identity = 206/304 (67.76%), Postives = 232/304 (76.32%), Query Frame = 1
Query: 13 LLSITDEVAIMASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQA-----------------------PFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQATG 855
LL+ D+ AS+ + L KEEDIQKML+AQ HIGTRNSD M++YIWRRRQDG+HI+NIGKTWEKL+LAAR++ AIENPQDV+AISARPYGQRAVLKFAQYTG SIAGRFTPGTFTNQITKQFREPR+L+ITDPR D+QAV EASYVN+PVIAFCDSDSPLQ+VDVAIPSNNKGKLSIGLLYWLLAREVLRMRGT+ R PWDVPVDLFFYR+PEELEKAEEAQA P+ DP A+A G+ P + GFAA PAA ++ P AQA G
Sbjct: 62 LLAPRDQAQANASTM--SILAPKEEDIQKMLAAQCHIGTRNSDHMMEEYIWRRRQDGVHIINIGKTWEKLMLAARVLTAIENPQDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRILVITDPRTDSQAVAEASYVNLPVIAFCDSDSPLQHVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTVSRLAPWDVPVDLFFYRDPEELEKAEEAQAFAAEQEQAQTWNASAGEAAPKEQPYSDPNAMA--GFEQAPAATG-------GFAA--PAAPEQQWD-PNAQAAG 351
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A1V9ZU98_9STRA (40S ribosomal protein SA n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZU98_9STRA) HSP 1 Score: 373 bits (958), Expect = 1.050e-126 Identity = 192/270 (71.11%), Postives = 219/270 (81.11%), Query Frame = 1
Query: 70 LQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQATGLGGGWDAD 879
L +EEDIQKML+A VHIGTRN+D+QM DYIWRRR DGIHI+N+GKTWEKL+LAA+IIVA+ENP DV+AISARPYGQRAVLKFAQYTGC +IAGRFTPGTFTNQITKQFREPRLLIITDPR DAQ V+E++YVNVPVIAFCDSDSPL+ VDVAIP+NNKGKLSIGLLYWLL+REVLR+RGTI R PWDV VDLFFYR+PEELEKAEEAQ D +++A GW E + + AA A ++ P A+ GG W AD
Sbjct: 2 LTQREEDIQKMLAAMVHIGTRNADAQMGDYIWRRRNDGIHIINVGKTWEKLMLAAKIIVAVENPADVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQPVRESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQTGAAD-ESMARAGWTNEAVAAEAATE-----------APTLYTAEPTAEWGTAGGEWGAD 259
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A6V0ZRC8_9STRA (40S ribosomal protein SA n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6V0ZRC8_9STRA) HSP 1 Score: 372 bits (955), Expect = 3.450e-126 Identity = 199/285 (69.82%), Postives = 223/285 (78.25%), Query Frame = 1
Query: 43 MASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAP------FQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDP--AAVSMEYQAPPAQATGL-GGGW 870
M+ S+LPA LQ KEEDIQ MLSA VH GTRNSDS M DYIWRRR DG+HILNIG TWEKL+LAAR+IVAIENP+DV+AISARPYG RAVLKFA YTGC SIAGRFTPGTFTNQITKQFREPRLL++TDPR D+Q+V+EASYVNVPV+AFCDSDSPLQ VDVAIP+NNKGK SIGLLYWLLARE+LR+RG++ R WDVPVDLFF+R+ EEL+K EE QA F+D AP A +V AAP + A D AA S E A PA A G G GW
Sbjct: 1 MSVSHLPAILQPKEEDIQMMLSAGVHTGTRNSDSSMTDYIWRRRNDGVHILNIGATWEKLILAARVIVAIENPEDVIAISARPYGMRAVLKFAHYTGCQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVREASYVNVPVVAFCDSDSPLQFVDVAIPANNKGKYSIGLLYWLLAREILRLRGSVSRSSEWDVPVDLFFHRDVEELKKNEEEQAAKLEEAAFEDATPETAPAAEATNLV--AAPPAYDAPPAGDQYQAATSWEGGAEPAAAAGAEGAGW 283
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A7S2N1P7_9STRA (40S ribosomal protein SA n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1P7_9STRA) HSP 1 Score: 370 bits (950), Expect = 6.020e-125 Identity = 184/232 (79.31%), Postives = 206/232 (88.79%), Query Frame = 1
Query: 4 LSPLLSITDEVAIMASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQ 699
L LLSIT +A AS LP LQ KEEDIQ MLSA VH GTRNSDS MQ+YIWRRR DGIHILNIGKTWEKL+LAAR+IVAIENP+DV+AISARPYG RAVLKFA YTG SIAGRFTPGTFTNQITKQFREPRLL++TDPR D+QAV+E+SYVNVPVIAFCDSDSPLQ+VD+AIP+NNKGKLS+GLLYWLLAREVLR+RGT+ R WDVPVDLFF+R+PE+L+KA+E Q
Sbjct: 4 LPSLLSITATMASFAS--LPPVLQPKEEDIQMMLSANVHQGTRNSDSAMQEYIWRRRNDGIHILNIGKTWEKLMLAARVIVAIENPEDVIAISARPYGMRAVLKFAHYTGSQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQAVRESSYVNVPVIAFCDSDSPLQHVDIAIPANNKGKLSVGLLYWLLAREVLRLRGTVPRSSDWDVPVDLFFHRDPEDLKKADEEQ 233
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A0P1B4R0_PLAHL (40S ribosomal protein SA n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4R0_PLAHL) HSP 1 Score: 368 bits (945), Expect = 1.180e-124 Identity = 190/263 (72.24%), Postives = 222/263 (84.41%), Query Frame = 1
Query: 58 LPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEG--FAAVD--PAAVSMEYQA 834
+ A +EEDI+ ML+AQVHIGTRN+DS+M DYIWRRR DGIH++N+GKTWEKL+LAAR+IVA+ENP+DV+AISARPYGQRAVLKFAQ+TGC +IA RFTPGTFTNQITKQFREPRLLIITDPR D+QAV+E+S+VNVPVIA CDSDSPLQ VDVAIP+NNKGKLSIGLLYWLLAREVLR+RGTI R PWDV VDLF YR+PEEL+KAEEAQA D ++ A PGWG A+P+P+E +AA PAA + E+ A
Sbjct: 1 MSAMATQREEDIKMMLAAQVHIGTRNADSKMADYIWRRRNDGIHVINVGKTWEKLMLAARVIVAVENPEDVIAISARPYGQRAVLKFAQHTGCNAIASRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESSFVNVPVIALCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQAIAGD-ESQARPGWG------DASPSPVEPALYAAEPSVPAATAAEWTA 256
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A485LRJ6_9STRA (40S ribosomal protein SA n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LRJ6_9STRA) HSP 1 Score: 368 bits (944), Expect = 1.360e-124 Identity = 196/279 (70.25%), Postives = 222/279 (79.57%), Query Frame = 1
Query: 70 LQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQATGLGGG-WDADPAAGGEEA 903
L +EEDIQKML+A VHIGTRN+DSQM DYIWRRR DGIHI+N+G+TWEKL+LAA++IVA+ENP DV+AISARPYGQRAVLKFAQYTGC +IAGRFTPGTFTNQITKQFREPRLLIITDPR D+Q V+E++YVNVPVIAFCD+DSPL+ VDVAIP+NNKGKLSIGLLYWLL+REVLR+RGTI R PW+V VDLFFYR+PEEL KAEEAQ D VA GW E ++AA T E Y PA G GG W AD AAGG +A
Sbjct: 3 LTQREEDIQKMLAAMVHIGTRNADSQMGDYIWRRRNDGIHIINVGQTWEKLMLAAKVIVAVENPADVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDSQPVRESAYVNVPVIAFCDTDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWEVAVDLFFYRDPEELAKAEEAQTGAVDE--VARAGWTNE---AAAAETATEQ---------PNLYTPEPAAEWGTAGGEWGADAAAGGWDA 267 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig96.20.1 >prot_A-nodosum_M_contig96.20.1 ID=prot_A-nodosum_M_contig96.20.1|Name=mRNA_A-nodosum_M_contig96.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=349bp LLSPLLSITDEVAIMASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMback to top mRNA from alignment at A-nodosum_M_contig96:304052..307096+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig96.20.1 ID=mRNA_A-nodosum_M_contig96.20.1|Name=mRNA_A-nodosum_M_contig96.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3045bp|location=Sequence derived from alignment at A-nodosum_M_contig96:304052..307096+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig96:304052..307096+ >mRNA_A-nodosum_M_contig96.20.1 ID=mRNA_A-nodosum_M_contig96.20.1|Name=mRNA_A-nodosum_M_contig96.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1047bp|location=Sequence derived from alignment at A-nodosum_M_contig96:304052..307096+ (Ascophyllum nodosum dioecious)back to top |