mRNA_A-nodosum_M_contig96.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig96.20.1
Unique NamemRNA_A-nodosum_M_contig96.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: D7FHP2_ECTSI (40S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP2_ECTSI)

HSP 1 Score: 529 bits (1363), Expect = 3.420e-187
Identity = 285/353 (80.74%), Postives = 294/353 (83.29%), Query Frame = 1
Query:   43 MASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAA---VSMEYQAPPAQATGLGGGWDADPAAGGEEAIPVEAAVPV-EAVPADAG---------------AXXXXXXAPQQPAVDDGGWGDASGAAAGGW 1044
            MASS LPACL AKEEDI KML+AQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDR   WDVPVDLFFYREPEELEKAEEAQAPFQ+P A AA GWGA+P+   AAPTPMEGFAAVDPAA   V +EYQAPP QA  +GGGWDA PA G E+ +PVE   PV EA+P DAG               A      APQQ     GGWG A   A GGW
Sbjct:    1 MASSSLPACLHAKEEDIHKMLAAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMAGGAAPTPMEGFAAVDPAAAAPVPVEYQAPP-QAAAMGGGWDAAPATGAEQGMPVEQVQPVAEAMPVDAGVPPAAGGGWDAQQAQAPVQQAQAPQQ--AQGGGWGGAPAQAGGGW 350          
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A7S4DAK2_HETAK (40S ribosomal protein SA n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAK2_HETAK)

HSP 1 Score: 394 bits (1013), Expect = 3.180e-134
Identity = 207/275 (75.27%), Postives = 228/275 (82.91%), Query Frame = 1
Query:   58 LPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQATGLGGGWDADP 882
            LP  LQAKEEDIQKML+ Q HIGTRNS+++M DYIW RRQDG+H++N+GKTWEK+VLAARIIVAIENP+DVVAISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLL+ITDPR D+QAVKEASYVNVPVIAFCDSDSPL NVDVAIP+NNKGKLSIGLLYWLLAREVLRMRGTI R  PWDVPVDLFFYR+PEELEKA+EAQA   + Q  A  GWGA P   +AAP      A + P    M+Y AP A       G++A P
Sbjct:   30 LPPILQAKEEDIQKMLAGQCHIGTRNSENKMADYIWTRRQDGVHVMNLGKTWEKIVLAARIIVAIENPEDVVAISARPYGQRAVLKFAQYTGANSIAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQAVKEASYVNVPVIAFCDSDSPLPNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTISRDAPWDVPVDLFFYRDPEELEKADEAQAAAYEEQVPA--GWGAAP--EAAAPA-----AEMAP----MDYVAPDAXXXXAAAGFEAPP 291          
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A836CJ71_9STRA (40S ribosomal protein SA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ71_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 6.880e-134
Identity = 206/264 (78.03%), Postives = 220/264 (83.33%), Query Frame = 1
Query:   43 MASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAP----TPMEGFAAVDPAAVSM 822
            MASS LPA L  KEEDIQKMLSAQ HIGTRNSD QM+DYIWRRR DGIHILNIGKTWEKLVLAARII AIENPQDV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLLIITDPR DAQAVKE+SYVNVPVIAFCDSDSPL  VDVAIP+NNKGKLSIGLLYW+LAREVLR+RGT+ R  PWDVPVDLFF+REPEELEK E  Q  F++P A  A GW A   + +AA      P +   +V PA   M
Sbjct:    1 MASSSLPAVLAPKEEDIQKMLSAQAHIGTRNSDDQMKDYIWRRRHDGIHILNIGKTWEKLVLAARIIAAIENPQDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQAVKESSYVNVPVIAFCDSDSPLNYVDVAIPANNKGKLSIGLLYWMLAREVLRLRGTVPRDAPWDVPVDLFFHREPEELEKTEAEQ--FEEPAAPTA-GWDATAGMGAAAAGDYAVPTQPLTSVTPAEAEM 261          
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: F0Y9V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V2_AURAN)

HSP 1 Score: 375 bits (962), Expect = 3.110e-128
Identity = 179/211 (84.83%), Postives = 198/211 (93.84%), Query Frame = 1
Query:   70 LQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQA 702
            L  KEEDIQKMLSAQ HIGTRNSD  M++YIWRRRQDGIHI+N+GKTWEKL+LAAR++ AIENPQD++AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQF+EPR+L+ITDPR D+QAVKEASYVN+PVIAFCDSDSP Q+VDVAIPSNNKGKLSIGLLYWLLARE+LRMRGT+ R  PWDVPVDLFFYR+PEELEKA+EAQA
Sbjct:    2 LAPKEEDIQKMLSAQCHIGTRNSDHMMEEYIWRRRQDGIHIINVGKTWEKLMLAARVLTAIENPQDIIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFKEPRILVITDPRTDSQAVKEASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEKADEAQA 212          
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A8J2SYU6_9STRA (40S ribosomal protein SA n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYU6_9STRA)

HSP 1 Score: 379 bits (972), Expect = 1.250e-127
Identity = 206/304 (67.76%), Postives = 232/304 (76.32%), Query Frame = 1
Query:   13 LLSITDEVAIMASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQA-----------------------PFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQATG 855
            LL+  D+    AS+   + L  KEEDIQKML+AQ HIGTRNSD  M++YIWRRRQDG+HI+NIGKTWEKL+LAAR++ AIENPQDV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPR+L+ITDPR D+QAV EASYVN+PVIAFCDSDSPLQ+VDVAIPSNNKGKLSIGLLYWLLAREVLRMRGT+ R  PWDVPVDLFFYR+PEELEKAEEAQA                       P+ DP A+A  G+   P  +        GFAA  PAA   ++  P AQA G
Sbjct:   62 LLAPRDQAQANASTM--SILAPKEEDIQKMLAAQCHIGTRNSDHMMEEYIWRRRQDGVHIINIGKTWEKLMLAARVLTAIENPQDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRILVITDPRTDSQAVAEASYVNLPVIAFCDSDSPLQHVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTVSRLAPWDVPVDLFFYRDPEELEKAEEAQAFAAEQEQAQTWNASAGEAAPKEQPYSDPNAMA--GFEQAPAATG-------GFAA--PAAPEQQWD-PNAQAAG 351          
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A1V9ZU98_9STRA (40S ribosomal protein SA n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZU98_9STRA)

HSP 1 Score: 373 bits (958), Expect = 1.050e-126
Identity = 192/270 (71.11%), Postives = 219/270 (81.11%), Query Frame = 1
Query:   70 LQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQATGLGGGWDAD 879
            L  +EEDIQKML+A VHIGTRN+D+QM DYIWRRR DGIHI+N+GKTWEKL+LAA+IIVA+ENP DV+AISARPYGQRAVLKFAQYTGC +IAGRFTPGTFTNQITKQFREPRLLIITDPR DAQ V+E++YVNVPVIAFCDSDSPL+ VDVAIP+NNKGKLSIGLLYWLL+REVLR+RGTI R  PWDV VDLFFYR+PEELEKAEEAQ    D +++A  GW  E + + AA             A ++    P A+    GG W AD
Sbjct:    2 LTQREEDIQKMLAAMVHIGTRNADAQMGDYIWRRRNDGIHIINVGKTWEKLMLAAKIIVAVENPADVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQPVRESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQTGAAD-ESMARAGWTNEAVAAEAATE-----------APTLYTAEPTAEWGTAGGEWGAD 259          
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A6V0ZRC8_9STRA (40S ribosomal protein SA n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6V0ZRC8_9STRA)

HSP 1 Score: 372 bits (955), Expect = 3.450e-126
Identity = 199/285 (69.82%), Postives = 223/285 (78.25%), Query Frame = 1
Query:   43 MASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAP------FQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDP--AAVSMEYQAPPAQATGL-GGGW 870
            M+ S+LPA LQ KEEDIQ MLSA VH GTRNSDS M DYIWRRR DG+HILNIG TWEKL+LAAR+IVAIENP+DV+AISARPYG RAVLKFA YTGC SIAGRFTPGTFTNQITKQFREPRLL++TDPR D+Q+V+EASYVNVPV+AFCDSDSPLQ VDVAIP+NNKGK SIGLLYWLLARE+LR+RG++ R   WDVPVDLFF+R+ EEL+K EE QA       F+D     AP   A  +V  AAP   +   A D   AA S E  A PA A G  G GW
Sbjct:    1 MSVSHLPAILQPKEEDIQMMLSAGVHTGTRNSDSSMTDYIWRRRNDGVHILNIGATWEKLILAARVIVAIENPEDVIAISARPYGMRAVLKFAHYTGCQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQSVREASYVNVPVVAFCDSDSPLQFVDVAIPANNKGKYSIGLLYWLLAREILRLRGSVSRSSEWDVPVDLFFHRDVEELKKNEEEQAAKLEEAAFEDATPETAPAAEATNLV--AAPPAYDAPPAGDQYQAATSWEGGAEPAAAAGAEGAGW 283          
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A7S2N1P7_9STRA (40S ribosomal protein SA n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1P7_9STRA)

HSP 1 Score: 370 bits (950), Expect = 6.020e-125
Identity = 184/232 (79.31%), Postives = 206/232 (88.79%), Query Frame = 1
Query:    4 LSPLLSITDEVAIMASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQ 699
            L  LLSIT  +A  AS  LP  LQ KEEDIQ MLSA VH GTRNSDS MQ+YIWRRR DGIHILNIGKTWEKL+LAAR+IVAIENP+DV+AISARPYG RAVLKFA YTG  SIAGRFTPGTFTNQITKQFREPRLL++TDPR D+QAV+E+SYVNVPVIAFCDSDSPLQ+VD+AIP+NNKGKLS+GLLYWLLAREVLR+RGT+ R   WDVPVDLFF+R+PE+L+KA+E Q
Sbjct:    4 LPSLLSITATMASFAS--LPPVLQPKEEDIQMMLSANVHQGTRNSDSAMQEYIWRRRNDGIHILNIGKTWEKLMLAARVIVAIENPEDVIAISARPYGMRAVLKFAHYTGSQSIAGRFTPGTFTNQITKQFREPRLLVVTDPRTDSQAVRESSYVNVPVIAFCDSDSPLQHVDIAIPANNKGKLSVGLLYWLLAREVLRLRGTVPRSSDWDVPVDLFFHRDPEDLKKADEEQ 233          
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A0P1B4R0_PLAHL (40S ribosomal protein SA n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4R0_PLAHL)

HSP 1 Score: 368 bits (945), Expect = 1.180e-124
Identity = 190/263 (72.24%), Postives = 222/263 (84.41%), Query Frame = 1
Query:   58 LPACLQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEG--FAAVD--PAAVSMEYQA 834
            + A    +EEDI+ ML+AQVHIGTRN+DS+M DYIWRRR DGIH++N+GKTWEKL+LAAR+IVA+ENP+DV+AISARPYGQRAVLKFAQ+TGC +IA RFTPGTFTNQITKQFREPRLLIITDPR D+QAV+E+S+VNVPVIA CDSDSPLQ VDVAIP+NNKGKLSIGLLYWLLAREVLR+RGTI R  PWDV VDLF YR+PEEL+KAEEAQA   D ++ A PGWG       A+P+P+E   +AA    PAA + E+ A
Sbjct:    1 MSAMATQREEDIKMMLAAQVHIGTRNADSKMADYIWRRRNDGIHVINVGKTWEKLMLAARVIVAVENPEDVIAISARPYGQRAVLKFAQHTGCNAIASRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESSFVNVPVIALCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQAIAGD-ESQARPGWG------DASPSPVEPALYAAEPSVPAATAAEWTA 256          
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Match: A0A485LRJ6_9STRA (40S ribosomal protein SA n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LRJ6_9STRA)

HSP 1 Score: 368 bits (944), Expect = 1.360e-124
Identity = 196/279 (70.25%), Postives = 222/279 (79.57%), Query Frame = 1
Query:   70 LQAKEEDIQKMLSAQVHIGTRNSDSQMQDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAEPIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQATGLGGG-WDADPAAGGEEA 903
            L  +EEDIQKML+A VHIGTRN+DSQM DYIWRRR DGIHI+N+G+TWEKL+LAA++IVA+ENP DV+AISARPYGQRAVLKFAQYTGC +IAGRFTPGTFTNQITKQFREPRLLIITDPR D+Q V+E++YVNVPVIAFCD+DSPL+ VDVAIP+NNKGKLSIGLLYWLL+REVLR+RGTI R  PW+V VDLFFYR+PEEL KAEEAQ    D   VA  GW  E   ++AA T  E             Y   PA   G  GG W AD AAGG +A
Sbjct:    3 LTQREEDIQKMLAAMVHIGTRNADSQMGDYIWRRRNDGIHIINVGQTWEKLMLAAKVIVAVENPADVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDSQPVRESAYVNVPVIAFCDTDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWEVAVDLFFYRDPEELAKAEEAQTGAVDE--VARAGWTNE---AAAAETATEQ---------PNLYTPEPAAEWGTAGGEWGADAAAGGWDA 267          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig96.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP2_ECTSI3.420e-18780.7440S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4DAK2_HETAK3.180e-13475.2740S ribosomal protein SA n=2 Tax=Heterosigma akash... [more]
A0A836CJ71_9STRA6.880e-13478.0340S ribosomal protein SA n=1 Tax=Tribonema minus T... [more]
F0Y9V2_AURAN3.110e-12884.83Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2SYU6_9STRA1.250e-12767.7640S ribosomal protein SA n=1 Tax=Pelagomonas calce... [more]
A0A1V9ZU98_9STRA1.050e-12671.1140S ribosomal protein SA n=3 Tax=Saprolegniaceae T... [more]
A0A6V0ZRC8_9STRA3.450e-12669.8240S ribosomal protein SA n=1 Tax=Thalassionema nit... [more]
A0A7S2N1P7_9STRA6.020e-12579.3140S ribosomal protein SA n=1 Tax=Helicotheca tames... [more]
A0A0P1B4R0_PLAHL1.180e-12472.2440S ribosomal protein SA n=1 Tax=Plasmopara halste... [more]
A0A485LRJ6_9STRA1.360e-12470.2540S ribosomal protein SA n=2 Tax=Aphanomyces TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig96contigA-nodosum_M_contig96:304052..307096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FHP2
Preferred nameRPS0
PFAMs40S_SA_C,Ribosomal_S2
Model size1049
Max annot lvl2759|Eukaryota
KEGG koko:K02998
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031123,GO:0031125,GO:0031503,GO:0032991,GO:0033036,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065003,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons7
Evalue5.61e-188
EggNOG OGsCOG0052@1|root,KOG0830@2759|Eukaryota
Descriptionstructural constituent of ribosome
Cds size1047
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig96.20.1prot_A-nodosum_M_contig96.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig96 304052..307096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870469.041183-CDS-A-nodosum_M_contig96:304051..3041311680870469.041183-CDS-A-nodosum_M_contig96:304051..304131Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 304052..304131 +
1680870469.0543015-CDS-A-nodosum_M_contig96:304996..3050931680870469.0543015-CDS-A-nodosum_M_contig96:304996..305093Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 304997..305093 +
1680870469.0654676-CDS-A-nodosum_M_contig96:305376..3054631680870469.0654676-CDS-A-nodosum_M_contig96:305376..305463Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 305377..305463 +
1680870469.0749905-CDS-A-nodosum_M_contig96:305705..3058851680870469.0749905-CDS-A-nodosum_M_contig96:305705..305885Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 305706..305885 +
1680870469.0844169-CDS-A-nodosum_M_contig96:306225..3064051680870469.0844169-CDS-A-nodosum_M_contig96:306225..306405Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 306226..306405 +
1680870469.0948029-CDS-A-nodosum_M_contig96:306640..3069131680870469.0948029-CDS-A-nodosum_M_contig96:306640..306913Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 306641..306913 +
1680870469.105981-CDS-A-nodosum_M_contig96:306946..3070961680870469.105981-CDS-A-nodosum_M_contig96:306946..307096Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 306947..307096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig96.20.1

>prot_A-nodosum_M_contig96.20.1 ID=prot_A-nodosum_M_contig96.20.1|Name=mRNA_A-nodosum_M_contig96.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=349bp
LLSPLLSITDEVAIMASSYLPACLQAKEEDIQKMLSAQVHIGTRNSDSQM
QDYIWRRRQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQ
RAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAV
KEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLR
MRGTIDRQQPWDVPVDLFFYREPEELEKAEEAQAPFQDPQAVAAPGWGAE
PIVSSAAPTPMEGFAAVDPAAVSMEYQAPPAQATGLGGGWDADPAAGGEE
AIPVEAAVPVEAVPADAGAGGGWDAAPQQPAVDDGGWGDASGAAAGGW*
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mRNA from alignment at A-nodosum_M_contig96:304052..307096+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig96.20.1 ID=mRNA_A-nodosum_M_contig96.20.1|Name=mRNA_A-nodosum_M_contig96.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3045bp|location=Sequence derived from alignment at A-nodosum_M_contig96:304052..307096+ (Ascophyllum nodosum dioecious)
TTGCTCTCTCCACTTTTGAGCATCACAGACGAAGTAGCCATCATGGCCTC CTCATATCTTCCCGCCTGCCTCCAGGCCAAGTGAGTATTGTCGGTTATTG AGATAGGTTTCCAGCTTTCGGTTGATTTTTATCGAGGCAGGTAACGGAGG GCTTCCGTCGTAAAGATAAGTCAAGTCTCCTTCAATTCATGGTGAGTACA AGCCGGACGATGGCTTGGAGATAGCTTGTGGAGAAAGGGGGTCTGTAGCA AGCCCCTGTCGAGCACCCGTGTAGAGTATTATTGCCATGAAATACCCTCG CTTTCCATGAAGCGCTTCGCCTTCCGACGAGGGCAACCATGCTCGGCTCT CGACCGCGACAGACCGCGACAAAGAAGTAATAATAGCTATAGTAAGATCC ACTGAAAAATAAAACTTGGCCATAGGTCACGTCTGTTTACAGTTAAATCT GAACCAACGCATCCAAACTTTCTGGGCATTGACACCGTCTACGAAACTGA TTCGAACAAAGGCACCACAGGCGATGGGATCTAATGTTGGGTTCCCCTTC ACCAAGCGCATAACTCTATTTGATTATGGGCAATGTGTGGTCTGTGTCTT ATTATACATATACGGTAGAAGTAGCTCCCCCTTCATACAGTCCTATGAAC TGTTGGTACTTACCAGGTACATCGCAGTTTAATCGATCGGGTACGGTACC TCTTGTGAGAGATACAGTATAAAACTCAACCAGAGTGCGAAATAAGTATT AGTTTTAACTTGGATCCTCTCGAGCTCAACCTGGGGACGCACAAGACTCA GCGTACGGCATGCGAAACGGTCCTTGACCGACACACTACGCGCAAGCCTA TCCATCTGTACGAAATGGTTTACGCACTATGTAGTCTTGTTCGCTCAAGT AGTGTATTTACATCTAGACTATACCTCTTTGATGCCTTTCGGTAGGGAGG AAGACATCCAGAAGATGCTTTCCGCCCAGGTGCACATCGGCACCCGCAAC AGCGACAGTCAGATGCAGGACTACATCTGGCGACGCCGCCAGGTCAGAAA GCTCTTAACTTAGTGGTACTGCGCGACCCTGACAGCTCTCTTCATAGAGT AAAGTATGTGCTTGTTTGGCCGCGTAAAGCATCCTGTCCGTATCGCCTCT CGTCGCCTTCAACCGCCTCATTCGATTGTTCGTTGGTTACGTTTTTTTAC CGTAACTCCAGCGGCTCTTGTTCCATTATGGCTTTTTGACGACGGGAGAC CAACTTACTACAGTAATTACCGTGCGGATGCTCATGCATGATGGATAACC GGCGATTTCATGACCGTTCCTCCAGGATGGCATCCACATCCTTAACATCG GAAAGACGTGGGAGAAGCTCGTGCTGGCCGCCCGCATAATCGTGGCCATC GAGAATCCCCAGGTGGGCATTCGTTGTTGCATGATGTCGATCGCCGAGGG CCCTTAAAAATCACATACTAGATACTTCAGACATGGACATGCCCGCAAGA TCACGCTCGCCGCCCTTAGCGTCCTCTACTACGGTAGAGAGACTTGCCTT TGCTATCGTGCGATAATTTCCACCCAACGCTGTTTCACTTTTTCCATTCA CTCACTCCCCTTGTTTACCTACCGCCTACGCATCCCGAACGCGGTCACTT CCAGGACGTGGTGGCGATCTCTGCCCGCCCCTACGGCCAGCGCGCCGTAC TTAAGTTCGCTCAGTACACGGGCTGCTTGTCCATCGCCGGCCGCTTTACT CCGGGAACGTTTACCAACCAGATCACCAAGCAGTTCCGCGAGCCTCGCCT TCTCATCATCACGGACCCGCGGCCCGACGCCCAGGTGCTTACGCCCTGCG CACTAACTTAATAAGAGAGTATATTGTCAGATTATGTGCCTCCCGAAGTT GATCATTTTAAAGAACCGCAAACGGGTGAGCCTCATGCTCTCGACGGGGG TAGTTCCGTGTATGAAGAAAATCTTGTTTTCGTCTCAAACCAAGATACCC ACGCCTTTTATGACTTTTTGAAAGAAGAGAGTTAAGACAGTTGCTAGAAA CCACCGCGAGGCGCTGACGTTCGAAAATGGCTCTAGACCGTTTGCCGAGT AAAATTGTTTTCGTTGGAACATTTCGCGTGTTCAAACCTTTCTTCCGCTT CTCGTCCATTTCCCTCGTATACAGGCGGTCAAGGAGGCGTCCTACGTTAA CGTTCCCGTGATCGCCTTCTGTGACAGCGACTCACCCCTCCAGAACGTTG ACGTGGCGATTCCGTCCAACAACAAGGGAAAGCTTTCCATCGGCCTGCTT TACTGGCTGCTCGCGAGGGAAGTGCTACGCATGCGTGGCACCATTGACCG CCAGGTACCACCTCAGGCATGCCGCTCTCTATCTGCCGCAGCACACCGTC CGGTCGTGTTGGGTCTGGTGTGCTCGTGCTTCCGCTAACGCGTTTTTTCT TTTAATGATCAGATCTCACCTGACTTTTTCGAGCAAGAGGAAGATGCTAA GTCTTTACCCCCAACCTTACGCTGTTCTATTTCGTGGTAATCTTCTGCCC TTCTCTGCATTGCCCCGATTGTTGTGATACGCTCTTCAGCAACCCTGGGA TGTGCCGGTGGACCTTTTCTTCTACCGAGAGCCGGAAGAGCTCGAGAAGG CGGAGGAGGCCCAGGCGCCTTTCCAGGACCCTCAGGCCGTCGCTGCTCCC GGCTGGGGAGCCGAACCCATCGTCTCAAGCGCTGCTCCCACGCCGATGGA GGGCTTTGCGGCGGTGGACCCGGCCGCTGTGTCCATGGAGTACCAGGCGC CCCCGGCCCAGGCGACTGGGCTTGGCGGAGGCTGGGACGCTGACCCAGCG GCGGGCGGCGAGGTTATCGGAGAGCCGCCAGTGCCAGACGTGCAGGAGGC AATCCCCGTGGAGGCCGCAGTGCCGGTGGAGGCCGTGCCGGCGGATGCTG GCGCTGGAGGAGGGTGGGACGCCGCCCCCCAACAGCCGGCCGTTGACGAC GGCGGCTGGGGTGACGCGAGCGGGGCCGCAGCCGGAGGGTGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig96:304052..307096+

>mRNA_A-nodosum_M_contig96.20.1 ID=mRNA_A-nodosum_M_contig96.20.1|Name=mRNA_A-nodosum_M_contig96.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1047bp|location=Sequence derived from alignment at A-nodosum_M_contig96:304052..307096+ (Ascophyllum nodosum dioecious)
TTGCTCTCTCCACTTTTGAGCATCACAGACGAAGTAGCCATCATGGCCTC
CTCATATCTTCCCGCCTGCCTCCAGGCCAAGGAGGAAGACATCCAGAAGA
TGCTTTCCGCCCAGGTGCACATCGGCACCCGCAACAGCGACAGTCAGATG
CAGGACTACATCTGGCGACGCCGCCAGGATGGCATCCACATCCTTAACAT
CGGAAAGACGTGGGAGAAGCTCGTGCTGGCCGCCCGCATAATCGTGGCCA
TCGAGAATCCCCAGGACGTGGTGGCGATCTCTGCCCGCCCCTACGGCCAG
CGCGCCGTACTTAAGTTCGCTCAGTACACGGGCTGCTTGTCCATCGCCGG
CCGCTTTACTCCGGGAACGTTTACCAACCAGATCACCAAGCAGTTCCGCG
AGCCTCGCCTTCTCATCATCACGGACCCGCGGCCCGACGCCCAGGCGGTC
AAGGAGGCGTCCTACGTTAACGTTCCCGTGATCGCCTTCTGTGACAGCGA
CTCACCCCTCCAGAACGTTGACGTGGCGATTCCGTCCAACAACAAGGGAA
AGCTTTCCATCGGCCTGCTTTACTGGCTGCTCGCGAGGGAAGTGCTACGC
ATGCGTGGCACCATTGACCGCCAGCAACCCTGGGATGTGCCGGTGGACCT
TTTCTTCTACCGAGAGCCGGAAGAGCTCGAGAAGGCGGAGGAGGCCCAGG
CGCCTTTCCAGGACCCTCAGGCCGTCGCTGCTCCCGGCTGGGGAGCCGAA
CCCATCGTCTCAAGCGCTGCTCCCACGCCGATGGAGGGCTTTGCGGCGGT
GGACCCGGCCGCTGTGTCCATGGAGTACCAGGCGCCCCCGGCCCAGGCGA
CTGGGCTTGGCGGAGGCTGGGACGCTGACCCAGCGGCGGGCGGCGAGGAG
GCAATCCCCGTGGAGGCCGCAGTGCCGGTGGAGGCCGTGCCGGCGGATGC
TGGCGCTGGAGGAGGGTGGGACGCCGCCCCCCAACAGCCGGCCGTTGACG
ACGGCGGCTGGGGTGACGCGAGCGGGGCCGCAGCCGGAGGGTGGTGA
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