mRNA_A-nodosum_M_contig9564.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9564.1.1
Unique NamemRNA_A-nodosum_M_contig9564.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9564.1.1 vs. uniprot
Match: D7FVB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.240e-12
Identity = 36/49 (73.47%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   19 APAASTP-TNGFDMSKFVKPEEWKCEACCVRNHPPSAAKCLSCETPKSG 162
            A A+S P TNGFDMSKF KP EWKC AC VRN PP A KCLSCE PK G
Sbjct: 2190 AAASSAPITNGFDMSKFRKPGEWKCGACLVRN-PPDATKCLSCEVPKPG 2237
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BLAST of mRNA_A-nodosum_M_contig9564.1.1 vs. uniprot
Match: A0A6H5L7J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.070e-11
Identity = 38/55 (69.09%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   16 TAPAASTPTNGFDMSKFVKPEEWKCEACCVRNHPPSAAKCLSCETPK---SGGAS 171
            TAP A     GFDMSKF KP EWKC+AC VRN PP A KCLSCE PK   SGGAS
Sbjct: 2558 TAPTAG----GFDMSKFRKPGEWKCDACLVRN-PPDATKCLSCEVPKPGASGGAS 2607
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BLAST of mRNA_A-nodosum_M_contig9564.1.1 vs. uniprot
Match: A0A835Z9Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 7.200e-6
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   40 TNGF-DMSKFVKPEEWKCEACCVRNHPPSAAKCLSCETPKSGGA 168
            T GF DM K V   EWKCEAC VRN PP+A KC+SCETP  G A
Sbjct:  235 TQGFGDMFKAVA-GEWKCEACLVRN-PPTAVKCVSCETPGPGAA 276
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9564.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVB0_ECTSI2.240e-1273.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7J5_9PHAE1.070e-1169.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9Q0_9STRA7.200e-665.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9564contigA-nodosum_M_contig9564:2305..2496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVB0
PFAMsNUP50,Ran_BP1
Model size193
Max annot lvl2759|Eukaryota
KEGG koko:K15304,ko:K17302,ko:K20282
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051020,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060968,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:2000112,GO:2001141
Exons1
Evalue3.67e-13
EggNOG OGsCOG5171@1|root,KOG0864@2759|Eukaryota
DescriptionRan GTPase binding
Cds size192
COG categoryU
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870460.9244149-CDS-A-nodosum_M_contig9564:2304..24961680870460.9244149-CDS-A-nodosum_M_contig9564:2304..2496Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9564 2305..2496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9564.1.1prot_A-nodosum_M_contig9564.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9564 2305..2496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9564.1.1

>prot_A-nodosum_M_contig9564.1.1 ID=prot_A-nodosum_M_contig9564.1.1|Name=mRNA_A-nodosum_M_contig9564.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
NTRATTAPAASTPTNGFDMSKFVKPEEWKCEACCVRNHPPSAAKCLSCET
PKSGGASAWSTGKS
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mRNA from alignment at A-nodosum_M_contig9564:2305..2496-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9564.1.1 ID=mRNA_A-nodosum_M_contig9564.1.1|Name=mRNA_A-nodosum_M_contig9564.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig9564:2305..2496- (Ascophyllum nodosum dioecious)
AACACGAGAGCAACCACCGCACCGGCTGCCTCTACCCCTACAAACGGATT
CGACATGTCAAAGTTTGTCAAACCAGAGGAGTGGAAGTGTGAAGCTTGTT
GCGTCCGGAACCACCCCCCGAGCGCCGCCAAATGTTTGTCGTGTGAAACG
CCCAAGTCCGGGGGTGCGTCGGCGTGGTCGACAGGCAAGAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9564:2305..2496-

>mRNA_A-nodosum_M_contig9564.1.1 ID=mRNA_A-nodosum_M_contig9564.1.1|Name=mRNA_A-nodosum_M_contig9564.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig9564:2305..2496- (Ascophyllum nodosum dioecious)
AACACGAGAGCAACCACCGCACCGGCTGCCTCTACCCCTACAAACGGATT
CGACATGTCAAAGTTTGTCAAACCAGAGGAGTGGAAGTGTGAAGCTTGTT
GCGTCCGGAACCACCCCCCGAGCGCCGCCAAATGTTTGTCGTGTGAAACG
CCCAAGTCCGGGGGTGCGTCGGCGTGGTCGACAGGCAAGAGC
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