prot_A-nodosum_M_contig9564.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9564.1.1
Unique Nameprot_A-nodosum_M_contig9564.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length64
Homology
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BLAST of mRNA_A-nodosum_M_contig9564.1.1 vs. uniprot
Match: D7FVB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.240e-12
Identity = 36/49 (73.47%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:    7 APAASTP-TNGFDMSKFVKPEEWKCEACCVRNHPPSAAKCLSCETPKSG 54
            A A+S P TNGFDMSKF KP EWKC AC VRN PP A KCLSCE PK G
Sbjct: 2190 AAASSAPITNGFDMSKFRKPGEWKCGACLVRN-PPDATKCLSCEVPKPG 2237
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BLAST of mRNA_A-nodosum_M_contig9564.1.1 vs. uniprot
Match: A0A6H5L7J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.070e-11
Identity = 38/55 (69.09%), Postives = 39/55 (70.91%), Query Frame = 0 
Query:    6 TAPAASTPTNGFDMSKFVKPEEWKCEACCVRNHPPSAAKCLSCETPK---SGGAS 57
            TAP A     GFDMSKF KP EWKC+AC VRN PP A KCLSCE PK   SGGAS
Sbjct: 2558 TAPTAG----GFDMSKFRKPGEWKCDACLVRN-PPDATKCLSCEVPKPGASGGAS 2607
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BLAST of mRNA_A-nodosum_M_contig9564.1.1 vs. uniprot
Match: A0A835Z9Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 7.200e-6
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 0 
Query:   14 TNGF-DMSKFVKPEEWKCEACCVRNHPPSAAKCLSCETPKSGGA 56
            T GF DM K V   EWKCEAC VRN PP+A KC+SCETP  G A
Sbjct:  235 TQGFGDMFKAVA-GEWKCEACLVRN-PPTAVKCVSCETPGPGAA 276
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9564.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVB0_ECTSI2.240e-1273.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7J5_9PHAE1.070e-1169.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9Q0_9STRA7.200e-665.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.1060.10coord: 23..59
e-value: 9.2E-10
score: 39.6
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 25..53
e-value: 2.3E-6
score: 26.8
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 24..54
score: 9.111317
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 25..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9564contigA-nodosum_M_contig9564:2305..2496 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9564.1.1mRNA_A-nodosum_M_contig9564.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9564 2305..2496 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9564.1.1 ID=prot_A-nodosum_M_contig9564.1.1|Name=mRNA_A-nodosum_M_contig9564.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
NTRATTAPAASTPTNGFDMSKFVKPEEWKCEACCVRNHPPSAAKCLSCET
PKSGGASAWSTGKS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf