mRNA_A-nodosum_M_contig9550.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI) HSP 1 Score: 196 bits (498), Expect = 6.250e-60 Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 3
Query: 180 MAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKAKGS 515
MAA+N +HKKILK+AKGYRGRSKSVFKIAIQ+VEKALQQAYRDRKNKKR+FRRLWIERINAGVRQHGM YS+F+N A+KADV+LNRKVLAEMAVTEPYSFRAVVETVKAKGS
Sbjct: 1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGS 112
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A2S6SBV7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin2 TaxID=2013089 RepID=A0A2S6SBV7_9PROT) HSP 1 Score: 143 bits (361), Expect = 2.970e-39 Identity = 70/112 (62.50%), Postives = 94/112 (83.93%), Query Frame = 3
Query: 174 RGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKAK 509
RG+ A + KHKKILKMAKGYRGRSK+VF+IA+QKVEK LQ AYRDR+ KKR+FR LWI++INAG R+HGMSYS FI KKA+++++RK+LA++A+ P +F+ +VE V+ +
Sbjct: 6 RGVQAKS-KHKKILKMAKGYRGRSKNVFRIAVQKVEKGLQYAYRDRRTKKRNFRALWIQKINAGTREHGMSYSQFIKGMKKAEIEIDRKILADIALNNPITFKFIVEKVRGR 116
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A3B9VH17_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9VH17_9PROT) HSP 1 Score: 143 bits (360), Expect = 3.700e-39 Identity = 70/111 (63.06%), Postives = 91/111 (81.98%), Query Frame = 3
Query: 174 RGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKA 506
+G S +H KI+KMAKGYRGR+KS F++A++KVEKALQ AYRDR+NKKRDFRRLWI RINA RQHG+SYS+FIN K A+++++RKVLA +A+T+ +F A+VE KA
Sbjct: 5 KGGVTSRRRHNKIIKMAKGYRGRNKSCFRVAVEKVEKALQYAYRDRRNKKRDFRRLWITRINAATRQHGLSYSVFINALKAANIEIDRKVLAHVAMTDAKAFSAIVEKAKA 115
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT) HSP 1 Score: 142 bits (358), Expect = 8.320e-39 Identity = 65/102 (63.73%), Postives = 91/102 (89.22%), Query Frame = 3
Query: 198 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 503
+HKKILKMAKGYRGRSK+VF++AIQ+VEKALQ AYRDR+ KKR+FR LWI+RINAG R+HGMSYS FI+ KKA+++++RK+L+++A+ P +F+++VE ++
Sbjct: 13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKRNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A2S6RR86_9PROT (50S ribosomal protein L20 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6RR86_9PROT) HSP 1 Score: 141 bits (356), Expect = 1.460e-38 Identity = 68/102 (66.67%), Postives = 87/102 (85.29%), Query Frame = 3
Query: 198 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 503
KHKKI+K+AKGYRGRSK+VF+IAI+KVEK LQ AYRDR+ KKR FR LWI+RINAG R+HGMSYS FIN KKA++D++RK+LAE+A P +F+ +VE ++
Sbjct: 13 KHKKIIKLAKGYRGRSKNVFRIAIEKVEKGLQYAYRDRRTKKRSFRGLWIQRINAGAREHGMSYSQFINGIKKAEIDIDRKILAEIAKDNPTTFKYLVEKIR 114
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A7S2PGZ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PGZ0_9STRA) HSP 1 Score: 142 bits (357), Expect = 4.090e-38 Identity = 72/112 (64.29%), Postives = 91/112 (81.25%), Query Frame = 3
Query: 168 QCRGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 503
Q RGMA+ KHK+++K AKG+RGR+ FK A+Q++EK+ Q AYRDRK KKR+FR+LWIERINAGVRQHGMSYS FIN + + +LNRKVLA+MA EP+SF+AVV+ VK
Sbjct: 43 QSRGMASK--KHKRVIKQAKGFRGRANRTFKAALQRLEKSWQYAYRDRKQKKRNFRKLWIERINAGVRQHGMSYSKFINGSMHSGCELNRKVLADMASNEPFSFKAVVDVVK 152
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT) HSP 1 Score: 140 bits (353), Expect = 4.370e-38 Identity = 66/99 (66.67%), Postives = 88/99 (88.89%), Query Frame = 3
Query: 198 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVE 494
+HKK+LK+AKGYRGRSK+ F+IAIQ+VEKALQ AYRDR+N+KRDFR LWI+RINAG R+HG++YS FIN KA +D++RKVLA++AV EP +F+++V+
Sbjct: 13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A2A5BDS7_9RICK (50S ribosomal protein L20 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDS7_9RICK) HSP 1 Score: 140 bits (352), Expect = 5.790e-38 Identity = 71/105 (67.62%), Postives = 87/105 (82.86%), Query Frame = 3
Query: 189 SNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 503
S +HKKI+KMAKGYRGR+K+ FKIAI+KVEKALQ AYRDR+N+KRDFR LWI+RINA VRQH M YS F+ KKA ++++RK+LAEMAV +P SF +VE VK
Sbjct: 10 SKNRHKKIIKMAKGYRGRAKNCFKIAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVRQHDMIYSTFMGGMKKAGIEVDRKMLAEMAVNDPASFTHIVEQVK 114
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A4P5SLS5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4P5SLS5_9PROT) HSP 1 Score: 139 bits (350), Expect = 1.220e-37 Identity = 69/102 (67.65%), Postives = 86/102 (84.31%), Query Frame = 3
Query: 198 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 503
+HKKILK+AKGYRGR+K+ F++AI+KVEKAL+ AYRDRK +KRDFR LWI+RINAGVR+HGM YS FIN K A +DL+RKVLA++AV EP +F +VE K
Sbjct: 13 RHKKILKLAKGYRGRAKNCFRVAIEKVEKALRYAYRDRKARKRDFRSLWIQRINAGVREHGMIYSKFINGLKLAKIDLDRKVLADLAVREPETFAKIVEKAK 114
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A4Q7DJH6_9PROT (50S ribosomal protein L20 n=1 Tax=Candidatus Finniella inopinata TaxID=1696036 RepID=A0A4Q7DJH6_9PROT) HSP 1 Score: 139 bits (349), Expect = 1.830e-37 Identity = 69/108 (63.89%), Postives = 90/108 (83.33%), Query Frame = 3
Query: 198 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKAKGSAA 521
+HKKI+KMAKGYRGRSK+ F+IA+Q+VEKALQ AYRDR+NKKRDFR LWI+RINA VR+ G++YS+F+N KA + ++RK +AE+AV EP SF+ +VE VK +AA
Sbjct: 13 RHKKIIKMAKGYRGRSKNCFRIAVQRVEKALQYAYRDRRNKKRDFRGLWIQRINAAVRELGLTYSVFMNGLIKAGITIDRKAMAELAVNEPASFKVLVEQVKTSMAAA 120 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9550.1.1 >prot_A-nodosum_M_contig9550.1.1 ID=prot_A-nodosum_M_contig9550.1.1|Name=mRNA_A-nodosum_M_contig9550.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=147bp MGAALAGSSSRRSLDYLFPKGQQSQGQCRGMAASNFKHKKILKMAKGYRGback to top mRNA from alignment at A-nodosum_M_contig9550:1082..3639+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9550.1.1 ID=mRNA_A-nodosum_M_contig9550.1.1|Name=mRNA_A-nodosum_M_contig9550.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2558bp|location=Sequence derived from alignment at A-nodosum_M_contig9550:1082..3639+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9550:1082..3639+ >mRNA_A-nodosum_M_contig9550.1.1 ID=mRNA_A-nodosum_M_contig9550.1.1|Name=mRNA_A-nodosum_M_contig9550.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=441bp|location=Sequence derived from alignment at A-nodosum_M_contig9550:1082..3639+ (Ascophyllum nodosum dioecious)back to top |