prot_A-nodosum_M_contig9550.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9550.1.1
Unique Nameprot_A-nodosum_M_contig9550.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length147
Homology
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.210e-62
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 0
Query:   31 MAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKAKGS 142
            MAA+N +HKKILK+AKGYRGRSKSVFKIAIQ+VEKALQQAYRDRKNKKR+FRRLWIERINAGVRQHGM YS+F+N A+KADV+LNRKVLAEMAVTEPYSFRAVVETVKAKGS
Sbjct:    1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGS 112          
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A2S6SBV7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin2 TaxID=2013089 RepID=A0A2S6SBV7_9PROT)

HSP 1 Score: 144 bits (362), Expect = 1.040e-41
Identity = 70/112 (62.50%), Postives = 94/112 (83.93%), Query Frame = 0
Query:   29 RGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKAK 140
            RG+ A + KHKKILKMAKGYRGRSK+VF+IA+QKVEK LQ AYRDR+ KKR+FR LWI++INAG R+HGMSYS FI   KKA+++++RK+LA++A+  P +F+ +VE V+ +
Sbjct:    6 RGVQAKS-KHKKILKMAKGYRGRSKNVFRIAVQKVEKGLQYAYRDRRTKKRNFRALWIQKINAGTREHGMSYSQFIKGMKKAEIEIDRKILADIALNNPITFKFIVEKVRGR 116          
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A3B9VH17_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9VH17_9PROT)

HSP 1 Score: 143 bits (361), Expect = 1.300e-41
Identity = 70/111 (63.06%), Postives = 91/111 (81.98%), Query Frame = 0
Query:   29 RGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKA 139
            +G   S  +H KI+KMAKGYRGR+KS F++A++KVEKALQ AYRDR+NKKRDFRRLWI RINA  RQHG+SYS+FIN  K A+++++RKVLA +A+T+  +F A+VE  KA
Sbjct:    5 KGGVTSRRRHNKIIKMAKGYRGRNKSCFRVAVEKVEKALQYAYRDRRNKKRDFRRLWITRINAATRQHGLSYSVFINALKAANIEIDRKVLAHVAMTDAKAFSAIVEKAKA 115          
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT)

HSP 1 Score: 142 bits (359), Expect = 2.960e-41
Identity = 65/102 (63.73%), Postives = 91/102 (89.22%), Query Frame = 0
Query:   37 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 138
            +HKKILKMAKGYRGRSK+VF++AIQ+VEKALQ AYRDR+ KKR+FR LWI+RINAG R+HGMSYS FI+  KKA+++++RK+L+++A+  P +F+++VE ++
Sbjct:   13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKRNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114          
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A2S6RR86_9PROT (50S ribosomal protein L20 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6RR86_9PROT)

HSP 1 Score: 142 bits (357), Expect = 5.270e-41
Identity = 68/102 (66.67%), Postives = 87/102 (85.29%), Query Frame = 0
Query:   37 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 138
            KHKKI+K+AKGYRGRSK+VF+IAI+KVEK LQ AYRDR+ KKR FR LWI+RINAG R+HGMSYS FIN  KKA++D++RK+LAE+A   P +F+ +VE ++
Sbjct:   13 KHKKIIKLAKGYRGRSKNVFRIAIEKVEKGLQYAYRDRRTKKRSFRGLWIQRINAGAREHGMSYSQFINGIKKAEIDIDRKILAEIAKDNPTTFKYLVEKIR 114          
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A7S2PGZ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PGZ0_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.460e-40
Identity = 72/112 (64.29%), Postives = 91/112 (81.25%), Query Frame = 0
Query:   27 QCRGMAASNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 138
            Q RGMA+   KHK+++K AKG+RGR+   FK A+Q++EK+ Q AYRDRK KKR+FR+LWIERINAGVRQHGMSYS FIN +  +  +LNRKVLA+MA  EP+SF+AVV+ VK
Sbjct:   43 QSRGMASK--KHKRVIKQAKGFRGRANRTFKAALQRLEKSWQYAYRDRKQKKRNFRKLWIERINAGVRQHGMSYSKFINGSMHSGCELNRKVLADMASNEPFSFKAVVDVVK 152          
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT)

HSP 1 Score: 140 bits (354), Expect = 1.600e-40
Identity = 66/99 (66.67%), Postives = 88/99 (88.89%), Query Frame = 0
Query:   37 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVE 135
            +HKK+LK+AKGYRGRSK+ F+IAIQ+VEKALQ AYRDR+N+KRDFR LWI+RINAG R+HG++YS FIN   KA +D++RKVLA++AV EP +F+++V+
Sbjct:   13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111          
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A2A5BDS7_9RICK (50S ribosomal protein L20 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDS7_9RICK)

HSP 1 Score: 140 bits (353), Expect = 2.130e-40
Identity = 71/105 (67.62%), Postives = 87/105 (82.86%), Query Frame = 0
Query:   34 SNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 138
            S  +HKKI+KMAKGYRGR+K+ FKIAI+KVEKALQ AYRDR+N+KRDFR LWI+RINA VRQH M YS F+   KKA ++++RK+LAEMAV +P SF  +VE VK
Sbjct:   10 SKNRHKKIIKMAKGYRGRAKNCFKIAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVRQHDMIYSTFMGGMKKAGIEVDRKMLAEMAVNDPASFTHIVEQVK 114          
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A4P5SLS5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4P5SLS5_9PROT)

HSP 1 Score: 139 bits (351), Expect = 4.570e-40
Identity = 69/102 (67.65%), Postives = 86/102 (84.31%), Query Frame = 0
Query:   37 KHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVK 138
            +HKKILK+AKGYRGR+K+ F++AI+KVEKAL+ AYRDRK +KRDFR LWI+RINAGVR+HGM YS FIN  K A +DL+RKVLA++AV EP +F  +VE  K
Sbjct:   13 RHKKILKLAKGYRGRAKNCFRVAIEKVEKALRYAYRDRKARKRDFRSLWIQRINAGVREHGMIYSKFINGLKLAKIDLDRKVLADLAVREPETFAKIVEKAK 114          
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Match: A0A7X2KDB2_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KDB2_9PROT)

HSP 1 Score: 138 bits (348), Expect = 1.300e-39
Identity = 68/106 (64.15%), Postives = 89/106 (83.96%), Query Frame = 0
Query:   34 SNFKHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSYSMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKA 139
            S+ +HKK+LK+AKGYRGR+ + F+IA++KVEK LQ AYRDR+ KKR FR+LWI RINAGVRQHGM+YS F+N  K A ++L+RKVLA+MA  EP SF+A+V+T +A
Sbjct:   10 SHARHKKVLKLAKGYRGRNSTNFRIALEKVEKGLQYAYRDRRAKKRTFRQLWITRINAGVRQHGMTYSQFMNGMKLAGIELDRKVLADMAALEPESFKALVDTARA 115          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9550.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI1.210e-6289.2950S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
A0A2S6SBV7_9PROT1.040e-4162.5050S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A3B9VH17_9PROT1.300e-4163.0650S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2S6SQA5_9PROT2.960e-4163.7350S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2S6RR86_9PROT5.270e-4166.6750S ribosomal protein L20 n=3 Tax=Alphaproteobacte... [more]
A0A7S2PGZ0_9STRA1.460e-4064.29Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1M3GWJ7_9PROT1.600e-4066.6750S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2A5BDS7_9RICK2.130e-4067.6250S ribosomal protein L20 n=1 Tax=Rickettsiales ba... [more]
A0A4P5SLS5_9PROT4.570e-4067.6550S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A7X2KDB2_9PROT1.300e-3964.1550S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..80
NoneNo IPR availableGENE3D6.10.160.10coord: 28..79
e-value: 1.0E-20
score: 75.6
NoneNo IPR availablePANTHERPTHR10986:SF23LP04985Pcoord: 34..141
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 36..65
score: 39.9
coord: 66..95
score: 60.1
coord: 99..125
score: 46.8
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 32..138
e-value: 1.9E-43
score: 145.3
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 33..132
e-value: 2.4E-42
score: 143.4
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 34..141
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 24..139
score: 26.188122
IPR005813Ribosomal protein L20CDDcd07026Ribosomal_L20coord: 33..135
e-value: 8.98039E-51
score: 155.335
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20Ribosomal protein L20coord: 80..141
e-value: 2.7E-27
score: 96.1
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 34..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9550contigA-nodosum_M_contig9550:1171..3223 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9550.1.1mRNA_A-nodosum_M_contig9550.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9550 1082..3639 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9550.1.1 ID=prot_A-nodosum_M_contig9550.1.1|Name=mRNA_A-nodosum_M_contig9550.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=147bp
MGAALAGSSSRRSLDYLFPKGQQSQGQCRGMAASNFKHKKILKMAKGYRG
RSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMSY
SMFINHAKKADVDLNRKVLAEMAVTEPYSFRAVVETVKAKGSAAKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
IPR035566Ribosomal_protein_L20_C