mRNA_A-nodosum_M_contig954.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig954.20.1
Unique NamemRNA_A-nodosum_M_contig954.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: D7FVN6_ECTSI (Guanyl nucleotide exchange factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVN6_ECTSI)

HSP 1 Score: 681 bits (1757), Expect = 1.220e-240
Identity = 352/616 (57.14%), Postives = 410/616 (66.56%), Query Frame = 1 
Query:    1 MSKKGKEARCENLRLEIEQMWDPLREIQLDDAADKRRSAEAGFGNAFIAAETIYRDWREHIRKARDEAKPVFTPRGNSLQLSLGGLTDRAGDIQTPRANDAAITMSAGANHVLLVHRSGQLYTWGVGASGRLGLDLTQGGNPQ----------------------------------------------LGLGKVDEGVYCSVPTRVMLGSISKVKEISCGAAHTACVTASGQLFVWGCGDGGRLGLGEERLGPQFEPVLVETLALVGEKMCSVSCGNAHTLALTAVREVLGGEGPSRTKRKQGGRIFQAGSTNVLGTFCPAFTPVRCMDDVTVRQVSAGYAHSCCCTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGRLVNLHEVK------------------------------------------------------------------------------------------VEVFGTEGGRRMAGKVTQCSAGKYVTTAVMAAADDPRDVDLAYKRAVQADAFNAEVLRQLETFFGAYDQWGRGDVMQVG 1440
            M +KGK    ++LRLEIE+MW PLREIQ +DAA K+ + EAG G+ +   E +Y  WRE + KARD+A PVFTPRGNSLQ++LGG+T+RA ++++PRANDAA+ +SAGANHVLLVHRSGQLYTWGVGASGRLGLDL+QGGNPQ                                              LGLG VD  VYCSVPTRVM+ S +KVKEISCGAAHTACVTASG LF+WGCGDGGRLGLGEERLGPQ+EPVLVE+LA  G+++ +VSCGN+HTLALTAVRE   GEG  R K  +GGR++QAGSTNVLGTFCPAF P   +D+V V+QVSAGY HSCCCT +GELYTWG+NRDGCLGLPR+TKFA+ PQLV+CLY  P NLA+GRP+RQSSVYD L + +AVDGDRSGD YRKCSCTQQDPQGWWEVD+G+LV++H+VK                                                                                          VEVFGT G RR  GKVT C AGKYVTTAVMAA  D  DV+  YKRAVQADAFNAEVLR+ ETFF AYDQWGRGD +++G
Sbjct:    1 MYEKGKNVMGKSLRLEIEEMWAPLREIQAEDAAIKKANEEAGLGSQYARGEHVYSQWRERMAKARDDASPVFTPRGNSLQVNLGGITERAAEMRSPRANDAAVAISAGANHVLLVHRSGQLYTWGVGASGRLGLDLSQGGNPQADAAAATVIQAFSGRPVLRASAGYNHSSAITTSGRVYTWGSAATGKLGLGMVDRDVYCSVPTRVMVDSPTKVKEISCGAAHTACVTASGHLFIWGCGDGGRLGLGEERLGPQYEPVLVESLATGGQRIGAVSCGNSHTLALTAVREAHEGEGEGRAKALRGGRVYQAGSTNVLGTFCPAFKPTMGLDEVMVKQVSAGYGHSCCCTMDGELYTWGSNRDGCLGLPRSTKFANFPQLVTCLYVSPKNLAMGRPSRQSSVYDGLSAGMAVDGDRSGDHYRKCSCTQQDPQGWWEVDLGQLVHVHQVKIWNRCDEPKDPSMERNFYAKRLFPCWVMASQEPFKDDVGGAALLDAMNTAVARAHFKEEQRCLVWRCPDQTMARYVRVQLQGFDFLHMAQVEVFGTTGARRSPGKVTHCCAGKYVTTAVMAAMQDSADVETVYKRAVQADAFNAEVLREFETFFAAYDQWGRGDAIKLG 616
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: A0A836CBD3_9STRA (Guanyl nucleotide exchange factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD3_9STRA)

HSP 1 Score: 343 bits (879), Expect = 2.230e-108
Identity = 200/464 (43.10%), Postives = 256/464 (55.17%), Query Frame = 1 
Query:    1 MSKKGKEARCENLRLEIEQMWDPLREIQLDDAADKRRSAEAGFGNAFIAAETIYRDWREHIRKARDEAKPVFTPRGNSL-----------QLSLGGLTDRAGDIQTPRANDAAITMSAGANHVLLVHRSGQLYTWGVGASGRLGLDLTQGGNPQ----------------------------------------------LGLGKVDEGVYCSVPTRVMLGSISK--VKEISCGAAHTACVTASGQLFVWGCGDGGRLGLGEERLGPQ-FEPVLVETLALVGEKMCSVSCGNAHTLALTAVREVLGGEGPSRTKRK--QGGRIFQAGSTNVLGTFCPAFTPVRCMDDVTVRQVSAGYAHSCCCTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGRLVNLHEVKV 1206
            M+KKG+    ++LRLE+E MW PL EI+ +DAA  R   EA     +  AE  Y+ WR  I   R +      P G  L           QL+L GLT+RAG   TPR   A + ++AGANH LL+HR+GQLY+WG+G SGRLGLD++ GG PQ                                              LG+G  +   Y + P RV+LG  ++  VK +SCGAAHTA VT  GQL+VWGC DGGRLGL     G   + P LVE+L  + E++  VSCG+AHTL  TAV E   G G S    K  +GGR++ AGS + LG    AF P+  ++ + VR VSAG+AHS   T EGELYTWG+NR GC G P  T F   P  V+ LY +P NLA G   RQSSV++N  +E A +G+  G     C+CTQQD Q WWEVD+G    +  V+V
Sbjct:    1 MAKKGRMTMAKSLRLEVESMWRPLMEIEAEDAAKHRADGEAAREKEYFKAEAEYQRWRTAIAAGRGDT--TLPPNGIGLSAAPSPNRIDRQLALMGLTERAGGSVTPRGVGAVVAIAAGANHALLLHRTGQLYSWGLGISGRLGLDVSLGGQPQADAPRASPIPTLAARPVTRMSAGFSHSAAVAAGGQLYTWGSGATGKLGIGACEGEAYVAAPARVLLGGSAQRPVKRLSCGAAHTAAVTGEGQLWVWGCTDGGRLGLSPLPPGGAIWVPTLVESL--LDERVALVSCGSAHTLVATAVVEEFEGSGESMLLLKIVRGGRVYAAGSASALGELQRAFAPIAALEGLAVRHVSAGHAHSAVITGEGELYTWGSNRGGCCGHPLGTAFVAAPACVAALYQRPQNLARGCTARQSSVFNNCEAERATNGETGGHGAAACTCTQQDAQAWWEVDLGSEARIDTVRV 460
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: A0A8J2SRF7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRF7_9STRA)

HSP 1 Score: 338 bits (867), Expect = 1.040e-100
Identity = 185/446 (41.48%), Postives = 245/446 (54.93%), Query Frame = 1 
Query:   22 ARCENLRLEIEQMWDPLREIQLDDAADKRRSAEAGFGNAFIAAETIYRDWREHIRKARDEAKPVFTPRGNSLQLSLGGLTDRAGDIQTPRANDAAITMSAGANHVLLVHRSGQLYTWGVGASGRLGLDLTQGGNPQ------------------------------------------------LGLGKVDEGVYCSVPTRVMLGSISK--VKEISCGAAHTACVTASGQLFVWGCGDGGRLGLGEERLGPQFEPVLVETLALVGEKMCSVSCGNAHTLALTAVREVLGGEGPSRTKRKQGGRIFQAGSTNVLGTFCPAFTPVRC-MDDVTVRQVSAGYAHSCCCTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGRLVNLHEVKV 1206
            A  + L ++I +MW PLREIQ ++ A  R+  +          E  Y  WR+ +++A +   P  T RGNS+ +  GG+T R    +  +   A   ++ GA H   VH+SG LYTWG+G+ GRLGLD+T+ G+P+                                                LGL   +E  Y S+P  + L   ++  ++ +SCGAAHTA  T  G+LFVWGCGDGGRLGLG E L   + P  V+ L   G ++  VSCGNAHTLA+T + EV  G G +R K KQGG++F AGS +VLG F PAF  V   +  V   Q SAG+AHS   T+EGELY WG N DGC       +F   P L +C+Y++P NLALGRP RQSS Y    + +AVDG+  G S   C+ TQQDPQ WWEVD+G   NLH VK+
Sbjct:  569 ALAKRLVVDITKMWAPLREIQAEEDARDRQKKQTEVVENIAKREHAYEAWRQQVKEAAEATSPERTARGNSIVIESGGITARGAGHKIAQGYAAIKQIAGGAQHFAAVHQSGALYTWGLGSGGRLGLDITENGDPRADATRPTVVQALASTPVLTTACGYSHMACVTTSRDLYVWGSAASGKLGLGLAAKEEECYASLPVHLPLRPKNRPLLRTVSCGAAHTAATTTDGELFVWGCGDGGRLGLGREGLATHWSPRRVDALFEAGHRIGDVSCGNAHTLAVTLIEEVWTGTGTNRMKEKQGGQVFAAGSASVLGLFHPAFDRVMGELASVQAVQASAGFAHSGVVTSEGELYCWGMNDDGCCAAHPKVRFLAEPTLAACIYSRPGNLALGRPARQSSCYGGQDAHVAVDGNCDGSSPELCTSTQQDPQAWWEVDLGDFANLHIVKL 1014
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: A0A482S3L9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3L9_9ARCH)

HSP 1 Score: 327 bits (837), Expect = 1.930e-96
Identity = 178/460 (38.70%), Postives = 258/460 (56.09%), Query Frame = 1 
Query:    1 MSKKGKEARCENLRLEIEQMWDPLREIQLDDAADKRRSAEAGFGNAFIAAETIYRDWREHIRKARDEAKPVFTPRGNSLQLSLGGLTDRAGDIQTPRANDAAITMSAGANHVLLVHRSGQLYTWGVGASGRLGLDLTQGGNPQL----------------------------------------------GLGKV--DEGVYCSVPTRVMLGSISK-VKEISCGAAHTACVTASGQLFVWGCGDGGRLGLGEERLGPQFEPVLVETLALVGEKMCSVSCGNAHTLALTAVREVLGGEGPSRTKRKQGGRIFQAGSTNVLGTFCPAFTPVRC---------MDDVTVRQVSAGYAHSCCCTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGRLVNLHEVKV 1206
            + K+ K+   +     I++MW PLRE+Q +  A       +      +  E  Y++WR  ++  R+     FTPRG SL + L G T RA D+ TPR  +A + +SAGA H  LVH++GQLYTWGVG SGRLGLD+T+ G+PQ                                               GLG++   E  YCS+PT++M+G   K V++ISCGAAH+A +T  GQL+V+GCGDGGRLGLG  R G  + P LVE   L+ EK+ SVSCGNA T+  T + +V  G+   + ++  GGR++ AG++NVLG     FT +            DDV ++QVSAGY H+   + EGEL+ WG+NR+GC G+P   +F D P  V  +Y +P NL++G+   QSS Y+   ++ AVDG + G    +C+ T Q+ Q W E+D+G++  + ++ V
Sbjct:  442 LQKRKKKVLADKFLKRIDEMWAPLREVQAETQALTIAKKTSTQHELQVKREENYQEWRGRVQNKRETMDASFTPRGQSLDIKLQGATPRAADLSTPRGFEAGLQISAGAAHTCLVHKTGQLYTWGVGTSGRLGLDMTEKGDPQADVAQPTLVQGIMDRPVIRVSCGYSHTGVIVSGGEVYMWGSAATGKCGLGEIVQSEECYCSIPTKIMVGVEDKRVRKISCGAAHSAVITEMGQLYVFGCGDGGRLGLGYNRFGTCYVPTLVE--CLLHEKILSVSCGNATTIVCTEINKVWVGDMDDKYRKVSGGRLYVAGASNVLGKQYDIFTRIHIDSDETDSNDADDVVIKQVSAGYMHTAVVSAEGELFCWGHNRNGCCGVPVVQQFVDRPTPVRFMYTRPVNLSVGKKAYQSSTYNRREAKYAVDGKKDGVGVLQCTSTHQEAQPWIEIDLGKIAVIDKIVV 899
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: A0A6H5JHV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV0_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 6.700e-80
Identity = 135/261 (51.72%), Postives = 154/261 (59.00%), Query Frame = 1 
Query:  910 EGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGRLVNLHEVK--------------------------------------------------------------------------------------VEVFGTEGGRRMAGKVTQCSAGKYVTTAVMAAADDPRDVDLAYKRAVQADAFNAEVLRQLETFFGAYDQWGRGDVMQ 1434
            +GELYTWG+NRDGCLGLPR+TKFA+ PQLV+CLY  PTNLA+GRP+RQSSVYD L + +AVDG+RSGD YRKCSCTQQDPQGWWEVD+G+LV++H+VK                                                                                      VEVFGT G RR  GKVT C AGKYVTTAVMAA  DP DV+  YKRAVQADAFNAEVLR+ ETFF AYDQWGRGD ++
Sbjct:    2 DGELYTWGSNRDGCLGLPRSTKFANFPQLVTCLYVSPTNLAIGRPSRQSSVYDGLSAAMAVDGERSGDHYRKCSCTQQDPQGWWEVDLGQLVHVHQVKDDPPFDSINPNSRSDASLHLRCPYLCTKIWNRCDEPKDPSMERNFYAKRLFPCWVMASQEPFKDDVGGAALLDAMNTAVARAHFKEVEVFGTTGARRSPGKVTHCCAGKYVTTAVMAAMQDPADVETVYKRAVQADAFNAEVLREFETFFAAYDQWGRGDAIK 262
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: K0S522_THAOC (EF-hand domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S522_THAOC)

HSP 1 Score: 233 bits (593), Expect = 1.820e-63
Identity = 159/453 (35.10%), Postives = 231/453 (50.99%), Query Frame = 1 
Query:   10 KGKEARCENLRLEIEQMWDPLREIQLDDAADKRRSAEAGFGNAFIAAETIYRDWREHIRKARDEAKPVFTPRGNSLQLSLGGLTDRAGDIQTPRANDAAITMSAGANH-VLLVH---RSGQLYTWGVGASGRLGLDLTQ----------------------------------------GGNPQLGLGKV---DEGVYCSVPTRVMLGSISKVKEISCGAAHTACVTASGQLFVWGCGDGGRLGLGEERLGPQFEPVLVETLALVGEKMCSVSCGNAHTLALTAVREVLGGEGPSRTKRKQ-GGRIFQAGSTNVLGTFCPAFTPVRCMD--DVTVRQVSAGYAHSCCCTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDN---LGSEIAVDGDRSGDSYRKCSC-TQQDPQGWWEVDMGRLVNLHEVKV 1206
            +GK    ++L L+  Q W PL + Q   A D+   +         A E+ YR W +H  + R  +KP+   +G    L  G +T R  DI+TPR  +    +S GANH  LL+H    S  LYTWGVG+ GRLG + ++                                        G   QLG G++   +E  +C +PT+++  +  +   +SCG +HTAC+   GQL+VWG  DGGRLGLGE+    Q+ PVLV++LA   E++  VSCG   TL LTA   V  GE    + R   GGR++ AG  ++LG  CP F  +   +    TV  +SAG  H    T  GE+Y WG+NR+GC G PR  +F + P  ++ LY  P+NLALG+P+R SS Y +   L +  AVDGD  G S  K    +Q +   W++VD+    ++  +++
Sbjct:  410 RGKLKTAKSLSLQFVQCWVPLAKEQAKRAKDEELESLCSKQRERAARESCYRGWIKHRNEMR--SKPITHDQG----LLAGSVTSRGRDIETPRNVEQIKAISGGANHCALLLHDANSSASLYTWGVGSLGRLGHEKSRDLNYPTLVDQLKGVQIADVGGGLSHCAAVSSAGHLYTWGTGTRGQLGFGQLGAEEEEFFCPIPTKLVFPT--RALRVSCGNSHTACIGQEGQLYVWGDPDGGRLGLGEDVDNVQYSPVLVDSLAK--ERVVDVSCGCHQTLVLTATTSV--GENTRISVRTSAGGRVYVAGPKHILGQTCPTFRQLDVFEKSSTTVECISAGNHHQAVVTNAGEVYCWGDNRNGCCGQPREMRFVETPTKIA-LYEAPSNLALGKPSRLSSRYKDASGLSANNAVDGDIDGHSEDKLLAHSQWEANPWFDVDLQSFAHISHIRL 849
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: A0A5D6XWN2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWN2_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.150e-62
Identity = 138/395 (34.94%), Postives = 197/395 (49.87%), Query Frame = 1 
Query:  169 WREHIRKARDEAKPVFTPRGNSLQLSLGGLTDRAGDIQTPRANDAAITMSAGANHVLLVHRSGQLYTWGVGASGRLGLDLTQGG-------NPQ---------------------------------------LGLGKVDEGV--YCSVPTRVMLGSISKVKEISCGAAHTACVTASGQLFVWGCGDGGRLGLGEERLGPQFEPVLVETLALVGE-KMCSVSCGNAHTLALTAVREVLGGEGPSRTKRKQGGRIFQAGSTNVLGTFCPAFTPVRCMDDVTVRQVSAGYAHSCCCTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGRLVNLHEVKV 1206
            +    R   ++  P FT RG + ++ L G+T R   + +PR   A   +SAG +HV L+   G +YTWG GASGRLG    + G       +PQ                                       LG+G  D+    + ++P  V      +++ +SCGAAHT  V+ +G+LF+WG  +GGRLGLG +       P LV  LA   + +   VSCG  H+   T V         S +K+ QGG +F  GS   LG   P + PV  +D V +RQV+ G AHS   +  GELYTWG NR+GC G   T  F   P+L+  L+ +P NLALG+P RQ +VY+  G ++AV+GD SG     C  T  + + WWEV++G+   +  V+V
Sbjct:  792 YERSARVQMEDVAPEFTTRGENFRIELNGITTRGPPLHSPRGRAAVAGVSAGGSHVALLFHDGSVYTWGNGASGRLGHQQNEFGKLCYDSDHPQRVLAFKDVNIRYVSCAHSHSAATSSDGDLYTWGSAVSGKLGVGLSDDTYEQFAAIPLLVKFPGKRRIRSVSCGAAHTGAVSTAGELFMWGSANGGRLGLGVDVTDTVVVPTLVRELATKRKVRAWQVSCGTTHSAVCTEVASSF----ESGSKKLQGGHVFVCGSATPLGRHVPTWEPVPELDGVGIRQVACGVAHSAAVSAYGELYTWGTNRNGCTGHAITRTFLARPKLLKSLHIEPYNLALGKPCRQLNVYNEQGPQLAVNGDVSG-KLATCIHTHLEEKPWWEVNLGQPAVIERVRV 1181
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: A0A8K1C5H0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5H0_PYTOL)

HSP 1 Score: 223 bits (569), Expect = 5.910e-60
Identity = 168/626 (26.84%), Postives = 261/626 (41.69%), Query Frame = 1 
Query:   10 KGKEARCENLRLEIEQMWDPLREIQLD-------DAADKRRSAEAGFGNAF--IAAETIYRDWREHIRKARDEAKPVFTPRGNSLQLSLGGLTDRAGDIQTPRANDAAITMSAGANHVLLVHRSGQLYTWGVGASGRLGLDLTQGG----------------------------------------------NPQLGLGKVDEGVYCS--VPTRVMLGSISKVKEISCGAAHTACVTASGQLFVWGCGDGGRLGLGEERLGPQFEPVLVETLALVGEKMCSVSCGNAHTLALTAV-REVLGGEGPSRTKRKQGGRIFQAGSTNVLGTFCPAFTPVRCMDDVTVRQVSAGYAHSCCCTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGR-----------------------------------LVN--------------------------------------------------------LHEVKVEVFGTEGGRRMAGKVTQCSAGKYVTTAVMAAADDPRDVDLAYKRAVQADAFNAEVLRQLETFFGAYDQWGRGDVMQVG 1440
            K +++  E  + ++ +MW  L+ I+ +       D  DK R        +F  IAA  + +         R++  P FT RG + ++ L G+T R   + +PR   A  +++AG  HV L+ + G +YTWG+G++GRLG    +                                                N +LG+G V++    +  VP  V       V+ +SCGAAH+  VT +G++F+WGC +GGRLGLG         P +V        ++  V+CG++H+   T +  E  GG     +K+  GG++F  G    LG +  ++  V  + DV +RQ+S G  H+   +  GELYTWG N  GC G  R   F   P+LV  L+ +P NLALG+P RQ ++Y+  G ++AV+GD  G    KC  T  + + WWEVD+G+                                   L++                                                        LH  +VEVFG        G+V     G   T  ++        +D  Y RA+QADA +A +LRQ E +  +Y  +GRG+   +G
Sbjct: 1828 KREKSLVEEEKQKLREMWAELKRIREERHAQIYKDKQDKERERINRMDASFEAIAARRLVQ---------REDLVPEFTTRGGNAKIDLSGITSRGPSLHSPRGRVATASIAAGGAHVALLLQDGSVYTWGIGSTGRLGHSRDRSSSVSFDSDHPQLVDAFRDVRIRQLACAFSHSGAVSDDGELYMWGSTTNGKLGVGVVEDCFEQNTVVPLTVKFPGKRHVRSVSCGAAHSGAVTTNGEVFMWGCANGGRLGLGPHVKDAVAVPTIVRDFVTRKLRVWQVACGHSHSALCTEIISEQRGG-----SKKLLGGQVFVCGGAIPLGRYVTSWESVPALQDVGIRQISCGATHTAAVSAYGELYTWGRNDKGCTGHNRERGFIQEPELVRSLHVEPYNLALGKPCRQINIYNEQGPQLAVNGDVDG-RLEKCIHTHLEEKPWWEVDLGQPAVIERIRVWNRTDEPTNPSKSRSEYTVRLFPFWILISEFPFKDLEGKEGLRAAKTQSAAFEQFTCNQRMTEWVLPTAHTVGQYVRIQLQSRNFLHLAEVEVFGVYSAFNYVGRVGTAHCGNEATLVIVPPTHQQSALDDYYLRAIQADADHATILRQYEAYERSYRLFGRGNSQVLG 2438
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: A0A2P4XEF6_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XEF6_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.870e-58
Identity = 136/449 (30.29%), Postives = 208/449 (46.33%), Query Frame = 1 
Query:   37 LRLEIEQM---WDPLREIQLDDAADKRRSAEAGFGNAFIAAETIYRDWREHIRKARDEAKPVFTPRGNSLQLSLGGLTDRAGDIQTPRANDAAITMSAGANHVLLVHRSGQLYTWGVGASGRLGLDLTQGG------------------------------------------------------NPQLGLGKVDEGV--YCSVPTRVMLGSISKVKEISCGAAHTACVTASGQLFVWGCGDGGRLGLGEERLGPQFEPVLVETLALVGEKMCSVSCGNAHTLALTAVREVLGGEGPSRTKRKQGGRIFQAGSTNVLGTFCPAFTPVRCMDDVTVRQVSAGYAHSCCCTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGRLVNLHEVKV 1206
            L+ E E+M   W  ++ ++    A +   A+         A+  Y    E      ++  P  T RG + ++ + G+T R   + +PR   A   +SAG +HV L+ + G LYT GVG SGRLGL     G                                                      N +LG+G V++    Y   P  V      K++ +SCGA+HT  VT +G+LF+WG  +GGRLGLG   +     P LV  L     ++  VSCG AH+   T V      E    +K+  GG ++  G    L  +  ++  V  +D V +RQV+ G +H+   ++ GELYTWG N  GC G      F D P+L+ CL+ +P NLALGRP RQ ++Y+  G  +AV+G++ G +   C  T  +   WWEVD+G+   + ++++
Sbjct:   81 LQAEKEKMLHEWQDVKTLREVRHAKREEDAKLKIIEKINHADHAYESRAERRVVQLEDTIPELTVRGENSRIDISGITTRGPPLHSPRGAVAVANVSAGGSHVALLMQDGSLYTCGVGTSGRLGLQSNHRGATCFDSNHPNRIEAFNVRVASLSEDISVRQVSCSFSHSAAIDSDGSLYTWGSACNGKLGVGIVEDEYKQYSLTPLLVKFPGKRKIRHVSCGASHTGAVTTAGELFMWGSANGGRLGLGPHVIDTIVVPTLVRDLVNKKVRVWQVSCGTAHSAFCTEVTS----EYSEGSKKLLGGHVYVCGGATALSRYMLSWERVPELDSVAIRQVACGNSHTAAVSSYGELYTWGRNFHGCTGHDANRIFIDKPELLKCLHVEPYNLALGRPCRQITIYNEQGPHLAVNGEKGG-TLATCIHTHLEDSPWWEVDLGQPAVIEKIRL 524
[Close]
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Match: A0A6G0XXD3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXD3_9STRA)

HSP 1 Score: 217 bits (552), Expect = 8.190e-58
Identity = 128/381 (33.60%), Postives = 188/381 (49.34%), Query Frame = 1 
Query:  208 PVFTPRGNSLQLSLGGLTDRAGDIQTPRANDAAITMSAGANHVLLVHRSGQLYTWGVGASGRLGLDLTQGGN----------------------------------------------PQLGLGKVDEGV--YCSVPTRVMLGSISKVKEISCGAAHTACVTASGQLFVWGCGDGGRLGLGEERLGPQFEPVLVETLALVGEKMCSVSCGNAHTLALTAVREVLGGEGPSRTKRKQGGRIFQAGSTNVLGTFCPAFTPVRCMDDVTVRQVSAGYAHSCCCTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTRQSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGRLVNLHEVKV 1206
            P FTPR +SL + L G+T R   + +PR   A   +SAG N+   V  +G LY+WGVG SGRLG   T  G                                                +LG+G  D     +   P R+      +V++ISCG AHT  VT  G++F+WGC +GGRLGLGE        P  V++LA V  ++  +SCGN H+   T ++  +     +  +   GG ++  GS   L  + P ++ V+ +  + V++V  G+ H+   T  GELYTWG N D C G P   +    P+L+   +  P NLAL +P RQSSV++   ++ AVDG++SG  +  C+ TQ D   WWEVD+G+   +  +KV
Sbjct:  776 PEFTPRNSSLIIELNGVTSRGPPLHSPRGASAVWKISAGENYACAVTHNGSLYSWGVGISGRLGQGTTMEGTINADFDRPTRVLALKSTYIQDIACAFDHSAAITVDGQVYVWGSTSTGKLGIGPQDAKYEQFAIYPVRLNFPRHRRVRQISCGRAHTGAVTTDGEVFMWGCANGGRLGLGENVQDEVTVPTFVKSLAHV--RVARISCGNCHSAVCTDIQSTM----DNTIETLTGGDVYMCGSAGPLLHYTPTWSIVQKLRGLPVKEVCCGFGHTAAVTYFGELYTWGQNIDECTGHPADRRVIQEPELLRAFHVAPYNLALRKPARQSSVFNEQDADRAVDGNKSGQLHT-CNHTQFDDHPWWEVDLGQPSVIERIKV 1149
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig954.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN6_ECTSI1.220e-24057.14Guanyl nucleotide exchange factor n=1 Tax=Ectocarp... [more]
A0A836CBD3_9STRA2.230e-10843.10Guanyl nucleotide exchange factor n=1 Tax=Tribonem... [more]
A0A8J2SRF7_9STRA1.040e-10041.48Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A482S3L9_9ARCH1.930e-9638.70Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6H5JHV0_9PHAE6.700e-8051.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0S522_THAOC1.820e-6335.10EF-hand domain-containing protein n=1 Tax=Thalassi... [more]
A0A5D6XWN2_9STRA1.150e-6234.94Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1C5H0_PYTOL5.910e-6026.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4XEF6_9STRA2.870e-5830.29Regulator of chromosome condensation (RCC1) n=1 Ta... [more]
A0A6G0XXD3_9STRA8.190e-5833.60Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig954contigA-nodosum_M_contig954:119237..130905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVN6
Preferred nameHERC1
PFAMsHECT,RCC1,SPRY,WD40
Model size1443
Max annot lvl2759|Eukaryota
KEGG koko:K10594
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0008150,GO:0012505,GO:0016020,GO:0019899,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051020,GO:0065007,GO:0065009,GO:0098772
Exons9
Evalue1.99e-241
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Ec32 ortholog descriptionguanyl nucleotide exchange factor
Ec32 orthologEc-01_006060.1
EC2.3.2.26
Descriptionguanyl-nucleotide exchange factor activity
Cds size1443
COG categoryDZ
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig954.20.1prot_A-nodosum_M_contig954.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig954 119237..130905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870458.2623384-CDS-A-nodosum_M_contig954:119236..1194761680870458.2623384-CDS-A-nodosum_M_contig954:119236..119476Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 119237..119476 -
1680870458.2745695-CDS-A-nodosum_M_contig954:120638..1208481680870458.2745695-CDS-A-nodosum_M_contig954:120638..120848Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 120639..120848 -
1680870458.2845755-CDS-A-nodosum_M_contig954:121353..1214761680870458.2845755-CDS-A-nodosum_M_contig954:121353..121476Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 121354..121476 -
1680870458.2962046-CDS-A-nodosum_M_contig954:126670..1268321680870458.2962046-CDS-A-nodosum_M_contig954:126670..126832Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 126671..126832 -
1680870458.307315-CDS-A-nodosum_M_contig954:127994..1281891680870458.307315-CDS-A-nodosum_M_contig954:127994..128189Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 127995..128189 -
1680870458.3185139-CDS-A-nodosum_M_contig954:128814..1288981680870458.3185139-CDS-A-nodosum_M_contig954:128814..128898Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 128815..128898 -
1680870458.328395-CDS-A-nodosum_M_contig954:130019..1301571680870458.328395-CDS-A-nodosum_M_contig954:130019..130157Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 130020..130157 -
1680870458.3395507-CDS-A-nodosum_M_contig954:130407..1305521680870458.3395507-CDS-A-nodosum_M_contig954:130407..130552Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 130408..130552 -
1680870458.3568187-CDS-A-nodosum_M_contig954:130759..1309051680870458.3568187-CDS-A-nodosum_M_contig954:130759..130905Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 130760..130905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig954.20.1

>prot_A-nodosum_M_contig954.20.1 ID=prot_A-nodosum_M_contig954.20.1|Name=mRNA_A-nodosum_M_contig954.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=481bp
MSKKGKEARCENLRLEIEQMWDPLREIQLDDAADKRRSAEAGFGNAFIAA
ETIYRDWREHIRKARDEAKPVFTPRGNSLQLSLGGLTDRAGDIQTPRAND
AAITMSAGANHVLLVHRSGQLYTWGVGASGRLGLDLTQGGNPQLGLGKVD
EGVYCSVPTRVMLGSISKVKEISCGAAHTACVTASGQLFVWGCGDGGRLG
LGEERLGPQFEPVLVETLALVGEKMCSVSCGNAHTLALTAVREVLGGEGP
SRTKRKQGGRIFQAGSTNVLGTFCPAFTPVRCMDDVTVRQVSAGYAHSCC
CTTEGELYTWGNNRDGCLGLPRTTKFADIPQLVSCLYAKPTNLALGRPTR
QSSVYDNLGSEIAVDGDRSGDSYRKCSCTQQDPQGWWEVDMGRLVNLHEV
KVEVFGTEGGRRMAGKVTQCSAGKYVTTAVMAAADDPRDVDLAYKRAVQA
DAFNAEVLRQLETFFGAYDQWGRGDVMQVG*
back to top

mRNA from alignment at A-nodosum_M_contig954:119237..130905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig954.20.1 ID=mRNA_A-nodosum_M_contig954.20.1|Name=mRNA_A-nodosum_M_contig954.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11669bp|location=Sequence derived from alignment at A-nodosum_M_contig954:119237..130905- (Ascophyllum nodosum dioecious)
ATGAGTAAGAAGGGCAAGGAGGCGAGATGTGAGAATCTCCGTCTAGAAAT
CGAACAAATGTGGGATCCGCTGAGGGAGATACAGCTAGACGACGCGGCCG
ACAAGAGGAGGAGCGCGGAGGCTGGTTTTGGCAACGCATTCATAGCGTGA
GGATAACCAGGATATGCCCATAGCGGGGCTCTTCAGGGGGTTTGGCGCTT
AGCAGATTTCCCGTTACCATTATTATACTGTCCACGGGAATGGGTCCTTT
GCCTCTTATCTAATAAAGCCACCCGTACCTCAATGAAATTGGTGTAGTCC
TCCCCTCGTACACTGCTGGCTCTTGGCTCCTTACCATTCACAAAATGGAT
CAGAGCGGAAACGATCTACAGGGATTGGCGGGAGCACATCAGGAAAGCGC
GAGATGAGGCGAAACCGGTCTTCACACCACGGGGGAACAGCCTGCAACTT
AGCCTGGGGGGCCTGACGGACAGGGCTGGTGATATCCAAACCCCGCGGGT
GAGCCGAGAGGGCTGCAAATGTGGAAACCCTCACGAGCGTATGGGGCAGG
GAAGGGGGCTTTTTTGCAAGCGAGGGGGTAAAGAGGGGCGGCACCTCACA
TACAAAACTCATGATATGTACACCCCGGAGCTGTTGATCCAGTATTTGAT
GTGCTCACGCGTCTGTTTCTCTTGTAGACACTCGGTATCTGTTATGTTTT
GTAGCTGCGCTAAATTTTTGCAACAGTGTATGGTTCACGATTCACCAGGC
AAACGATGCGGCCATAACGATGTCGGCCGGAGCGAACCACGTCTTGCTCG
TGCATCGATCGGGGCAGCTCTACACCTGGGGCGTTGGCGCGAGCGGTCGG
CTAGGCCTCGACCTCACACAGGGTGGCAACCCTCAGGTGGGACATTTTCC
CTGTTAGCCAAGGTCCGAATCACAGTTCGACGATGATGAGGAAGTGGGGT
CTCTATTAACTTTTTTGGCATTACAAAATCGATCATAGCTCATCTTTCGT
CCTGCCAAGCAGCCTTGGCACAACATGTGGTTGCACTTCAGGGCATCTGT
GTGCACGACCACAACTTGGCACTATAGGCGTTCCCCCTCGCGAAAAAACG
GGCCATACATGCAGGACCCCCAATAAGGAAAAGGCGAACAAAGAACGGTT
GCTAATACCCGAAGAATAACAACCCCGAGCCATCCGTTATAAATTGATAA
TAATTCTAAGGTGCAATCCCATTCCCCCACCACGACCCTCGAATCACGTA
TTGATAAAAGGCGGACGTCTCTACTGCTACCGTGATCCAAGCATTCGGGG
GACGACCTGTGATAAAGGTCAGCGCCGCCTATAGCCACAGCGCTGCGATA
ACCTCTTTAGGTCAGGTGTACACGTGGGGAAGCGCGGCCACAGGGAAGGT
GAGGTTTCCGAAAATGTGTCGGTACTGCGGCATCTGAGGTGACGGGTGGT
CTGTTTTGAGTGTACAGAGCATCCCCTAGGTCGAACCGAAAGATGCGATC
AAGAAGAGGATGCAAAATATTATTAACGACTTAGAGCTATTCAAAGGGTA
TCTTGAAGCCCTACCCCCCCCCCCTCCCCACCCCCTTACTATTAAACATA
TGTTGTGTACGAAGTGTTTAAACGTACTATTAATAGTATCGTGTACTACT
GCGTTTCTAGAAATATTGGGGAAAAAATCCTGAGCGGCCTTGGAATTTTC
TTCATAAAGTCTATACCTCATGGACTATTAATAGATGAATTTTTCTTTAT
TTGAACATTGAGTTACTCTTCTCTGCTTGTACAAGATTTGCTTTTGCTGC
GAGGTACATCCTTGCTGGGGGCCAACACCCAGGTGTCGGGTCAGGACCTT
GTTCAAGTCTATATCGCGTAAGCACGTGCACTCTCAACTAGTGTACGATT
TTGATTCATCGCCTTTCTCGGAACACGAGGAACTCGAAACCACCAATAAC
CCCCCAACAAAATTTGACGTGCGCCGTCGTGTGTCCCGCTTCATATTTCG
CCCACAGCTGGGTCTCGGCAAAGTTGATGAAGGCGTGTACTGCAGCGTGC
CAACCAGAGTCATGCTGGGCTCGATCTCCAAGGTTAAAGAGGTGTGTTGA
AGACGGACTGACACGTTCCTTTGGTATAACTTGGATTTTCATATAGGAGG
TTGGAAAATCCTCGGCTTGGTTCGCAGCGAGGAATGCTCGGCACGAGGAA
CAAACACCACTTTCCAAGCTTGGTACACTACACAACTGCTACGACGTCTG
GCGAGTTTTTTGTCCTACTTAAGAATTGAAAGGTCTATTGGTCAGCAGCA
TTCTAATTGTCGAGAAAGCCTGGGTCGGTCGTAACTTTGTAACTATCACT
CTCCACCTCCCCAGCTGCCCTCCTCCCCGGACCCAGCAGGTGAAACGTAG
GAAAGATGCGACATGCCGCGCTAGACGCCTCGCGCGGGATGGTCACTAAC
AGTCTCTTTCTACGATACCCCCCCCGAACCGACGTTTTCTTTAACGGGCA
TTTTGTGTTGTAGCGAGTCAATACAAATCGTAATGTTAGTAAAAAGGCGA
CGATCTCTTGCTCTCTCCAACTCTCTCCCATACGATAGATCCAATTTTTA
TTTAAATGAATATAAAGGGCCAAAACGTCGCGAAAACGACTCCTGAAAAC
TTCAGTATGTTTCACGCTCTCCCGCCGCATCTCCACTTCGTCTTGGTGGC
CTTCGTATAAGAAAAGATAAGCTGTGGCGCGGCACACACTGCGTGTGTAA
CGGCGTCGGGGCAGCTTTTTGTCTGGGGCTGCGGCGACGGCGGGCGCCTG
GGTCTGGGAGAAGAGCGGCTGGGCCCTCAATTCGAGCCGGTTCTCGTGGA
AACTCTTGCGTTGGTGGGAGAAAAAATGTGCTCTGTCAGCTGCGGAAATG
CGCACACTCTGGTGCGTAAATGGCTGCATGCATTGGTCTGTCTGCAGTCG
GTGCTCTGGGCTTACAAAAAACGACGGGAAAAACGATGTCCTGGCCCTTA
TAAATAGCAAGGAACATACTCTAGACGACAGGCACTCAGCATTCTCGTTG
CGGAAAGGAAGCGTGATTTGTTCACCCCTCTCGTCTTGACATGAATACAA
TATAAGGAACAAGCTCATGCGCATCGAGATTACGTCACCCCGTGAGATGG
TGGGTTAGTGTCTCACCCGCAGCGAGCAGTCCTGGCGACTTCGTGTTTGA
GTGTTTATTTTCGAATGCGGATAAGTTGTACACAGCAGCGTCCACGCCGA
CCACGCCGTGCTAGTAGAGCACGTGCAATCGATCGACGGAACTTTGACTT
CTTCGGGGGAGAGTCCTGTCCTCTCTGTCGAACATGTACATCCCCCTGAG
CAATCATTGATGAAATTCTCTAAGGTTGTGCTCAAACACTTTGAATTTGA
TGTGTACTAGAGTCTATCTCCTCTACCCAGAGCTAAGTATCTGATCTCGT
TCTGATTACCTATAATATTTTTCTCCATGAAGAGTCTGCAGTAGTATGTT
GGTCTAGCACTTCGACCGAAGAGAGCGAAAGCCGATTGGTAATGACCTCT
TCTGAGTAAGCTCCGGGGGGGGGGTGGGGCGAAATTGTTCTACTGCCCCC
CTCTATTTTTGTTGCAACGATGCGAAATATGCTTGCGTGGGAAAGAACGC
CCGTTGGACACTTTTCGACGAGATCTCTTCAACGCTGCGGCGTGGTTTAG
CTATGTTAACGGAGTGACCGAAAAATAAGTAGGGGCGCGTGCTTATACAT
AATTATGGCACACCATCCGTGTTTCGAGCATTGCCCGCCAAATGTCACAA
ACCCTGACTCGTCCAGGCCCTTTTGCTCCGAAGGTGACTAGTATTGCTCC
TTCCGAGCCCTCTGCGCCACAATTTTTGTTCATTCGCTCAAACGCACGAC
TGGCCTGTCAATTGTCGCCGACGTATTTCCATACTAAGGGGTTGAGCAAT
GGCGTTCACTTTTTAGTGAGTAAACGGAATGGATTACAAATTTTGGATTG
TGCACCTATACACCCCATGCAAAACGCTTCCCTAAGCTATATACTACTGG
GTCACGTCGCTTCATTCCTATAGGCACTGACGGCGGTGCGAGAGGTACTA
GGCGGCGAAGGGCCGAGCCGCACGAAACGGAAACAAGGAGGACGGATATT
TCAAGCGGGATCGACCAACGTTCTCGGCACTTTCTGTCCAGCCTTCACAC
CCGTGCGATGCATGGATGACGTCACGGTCAGGCAGGTCGGGAGATAGATA
GAGACTCAAGTAAGTGCGCCTTTCGACATGCGTGCTTATACACAGTGACA
TATACTGATAGCGCCGCGCTTGTGGAAACTTCGTCGTTGTTTTGGCATGC
ATGAATAATGTCTATGGGGTTTGGAATGATCGGAAGTCTCAGCGTTGACA
GGTCTTACACGGGAGGGATGCTGTGGGTAGGGTAGTTGTTGCAGGCTCGA
TATGATCACATTACTCAGACGAATATATAGAACCTATATATTGTTATAAT
ATTGGTACGAATCCTGAGTACACACCTAGACATCTCTTACACGCACGCCC
TTTACCCTCTCATACACTGAAATGGTGGGGCTAATCATTCTAGATTGGGG
AATAATAATCAAGTCCCCTGAGTAATAACGTATATTGGTGTTGCTCCTCA
CAAGTGTAATCTATCCGCAATTGATTAAACATCGAGTAACTCTCACATCC
TCCCTGCTCGATGATTGATCCACGTCTAATTTACCAAATATACGGACTAT
AATGTCGCTCCGCTTTTAAAACGCAGTCGTCAAATTATGTCATCCTTCAC
GCATAAAAGAATAAAAATAATCATATCCGAACTCATCATACTCATACTTC
AACTCATTGTACTGCACTCAAATTCAAAGGAAAAATCCCCTCATTATTAG
GAATTTTCGGTGAAATGTAAACAAACCATACACTGTATAATATATCATCC
AAACCATTGCGAATGTTCTGTTATTAAAGATGAAGTATCTCAAACAACAG
AAAGTTTCTACACAGTCTAAGTTGTAAGAATTCGGCAGGCCGTGCACTTT
GTATGCTACCCGCGGATCATTAATCGATGCTCAACGTAACTACAGTGAAG
AAAAATCAGAACGCACCCAGACCTTCTGAGCATCCCCCAGTTAGGGGGGG
GGGGATGTCAAAACGTTTATACTAGTAGGTGGGTTGAAAGGCTGCAAATA
CAAAACCTCTTCATGGCATTTAAACGGTTTCCCCGATGGAAATAACATTG
GGTCAACAGTATAATATCGGGGAGAAGCCCACCGTTATACTGCACACTTA
CATTGATCGCCATGCAGGGACACCAGAAAAACAGTTAAAACAAAACAGAA
ACAATGTAGTACACCATCACACATGGTAGTAATAATATACAATTACATAG
GCTATAAATACAAAGCCACTACATGGTGTTTAACCGGGTTCCCCAATGGT
AGTAACCTTGGGTCAACAGTACAATGTCGGGGAGAAATCCGCCGTTATAC
TATACAATTATATTAATCGCCATGCACAGCCACCAATCATAACCCGGCAT
AACCACTGTAGTACATAGTTAAGAGGATAGTACTAATGTCGATAATAGTA
CCATCGAACCATACGAGAATAGGGGCTTGGGTAAACAGTAAAATGTAAGG
GAGAAATCCACTAGTATACTGTACAATACCATTAATTCCCATGCAAGGAT
ATCACACAAATACAGAAGACACGGGAAGCTTGGGTTACAACTCAGTTTGT
TACATTACATCTAGGATCGGATGGGTGTCACTGAAGGGGATTTACAGGTA
TAGATCAGATGTAGACGTGATCGTGGAAAATTGTACAAAAACTTTTATTT
TGTTATACGTATTTAACGAAAGATCGACCCCCGCCTAGTAATTTTGTAGT
ATATAGTACAATGCAGTGCAGTACCATAGCATAGAAATAATTATATGATA
TCATAAGTAGTACATATCAAAACACGCCTAGATCTTCTGGGCATAAAAAA
CGTTTAGGTGGGATTAAAGGCTACAAATAAATACAGAACTTCTTCATGGC
ATTTAAACGGGTTCCCCGATGGAGATAACATTGGGTCACCAGTATAATGT
CAGGGAGAAGCCCACCATTATTTATTCCGGCAACACAAAAGCTCAATGAG
TGCTCTGGTTTTCTCTCACCATTCATGTAGCCATTTTTATAAACAGTAGA
AAAGTTCCTAGCGAATTATCCCGCGTACAGTAGGTGGTCTAGAAAAAGTT
TATTGTAGTAACGACCTCTTCTGTGCAAGTTAAACCGTACATCAGAACCA
CTACACTCCGCTTTTATCTAGTACTCAAACCTGAATCCATCTAGACCCAA
ACAGATGATATACTATGGTACTATTAATAGATGGTACCAAGCTTTGAAGT
GCTCTCAATAAAGACGACCTACAGTAAATCGTTCCCTGACGACAGTGGGC
AGGTCGCATATAGGATTCGTGCATAGTTAACCTGTAAAAACAATCCAATA
TCCCACGTACGCGAAATTTCATACTTTTAGTTGGTATCAAATCAGCATAC
AAGTTTTCATTGTCGTATCTCCCTCTGTCAAGTACGATGAAGGACGACAT
TTTTTTAAGATCTGACGAGATTGTCAAAATGCTCAGGATGTTGGCCTACT
GCTGCTGCTCTACATTTTTGGTTCAGCCAACAAAAACATCGATACATGTT
TTGAATCAACTCAGCATGCAATCCAGTTACAAGAGTCGAAATATAAATAG
CTCGTGGTGCCATGTGTAAACGCACTTGAGATTTGATCGCTCTGTTTTTT
CAACGTTCGTCCTATCCTGCAGCACTCAAGAAAGAGTTAAGATAGTAGTC
TCAAAATATATTTCAAATACAGCACCATCACTACTTGAGCCTTGGGCAAA
AAAAGCGCCAAGCGATACTGTTTTGAGCATCGTAACAAATTTGTACTCTG
ATACTTATTGGTTTGCTGTGCCACAGCAGTTCAACACTACAAACGATAGT
TTCCAAAATTGTATGAAATCATGTAGCGGGCTGTATTCCCGGCTTGAGCG
AGAGTTCCTGTATCAGACAAATAAAAAATTGCGTGGATATACACCTCCTA
AACCCTACCCCGTCGTGAAAAAAGCAAACCAAGATGGTTATTTCTATACA
GTCGCTGAGCAAGAAGCTACTCAAGGATCAACTTGGTCTCCGGAAGTTAC
TCTTGATCGATCGAGTTGGCACGTCGCGTTTGCCCTCTTCTTAAAATTCT
CGTTTCGTTCGTCTTCTCAGCGGTATTTTTCGCCTGCAATCACTGAAAAA
CAAACAACGGCAAACGAGCAAACAATCATCCAAAACACAGCCCCCCCCTG
GCAAAAGATAGTAGTACAGCCGCTGTTTGGCGTGCGGTGCGTCTCCCCAT
CATCCGCCGGGATCGAACTGCTTGTGTTGTTTGTTGTCCAACTCCACCAT
CTCTCATTGTTGCTAGCACATTGGCAAAATCACGTTTTTATAATATACGA
CTCATTTTGAAGTCTGTTTGTCGGGTTTCACCCGGACAACAACCTGAAGA
GGGATGATTCCCCTCTCCTCTACGCTACCGTCGGCAGCTGTAGACACGCC
GACGGTTGTTCGTTGCATCTGCCTGAACGAGAGACGCGGCAGTTCGGATG
CTTCCATACCCTTACCACCTAATGATGATTCGAGCGCTATCCGCTCAGGC
TACACCTTACCCTCCACCTTTTCCTCCTTACAAATCTCTGCATGAAGCAG
AATTTTTCTCCACTTGTTCTTGTCACTCCTCTTGGGCTCCTCCGTACCTA
TGTATGTTGCCACCCTGGAACTAGAACACGAACGTTGCGGTGGTGATCGT
GCAGACGATCGTCGCGGGGGAAAATAGTACTGCGGTGGTGGCTGTGGCGG
CACGATTTCCTACTTCAGCCGGTTTACCTCTGCTCACACACTTTCAGTAA
ATTCTTGAGGCGAGGGCGGCCGTCGCGGTTCAAAATATACTGCGATTTTG
CAGTGTTTGAGATCCTCGACCGAACACACACGCCTCGGAATCCTGCGCTG
CCTCTCAGCCAGTACCTCGCTCCTGTCGAAGCCATTGTTTCTCCTCCAGG
CTGCAAGCTTTTCTAGCAATCGAAGATGGTGCATTTGGTATAATCTGTGG
GATGCATAATCTTCCTAACCAGAATAAGCTTGTGCACGCACTCGTAAATT
ATAGCAAACTCTGCATGCATCGCGGTTATGTCCTGCTCGGTGAAATTCAT
TTTTACCAAGTTGTCACCAGATCAGAACGCAGTATTCACAACTCACGTTC
GTGGAGCTTCCTATCCGTCAGGGTTACCTCCACTCCTAGGCCATCGTCCC
TCTTGGCGCTGGCGCTGGTGCTTGCATTCTACCTAGCGCTCTCTCGACCG
GCGTTGTCTCTCTTGCTCTCCTTGAGCAGGTGACTTTTCGCCCTCAGTCG
GCGATCTTTAAAGCCCTGCTTTCTGTACTGGTAAATGAATTACCAGAAAT
CCCAAATTTTCCAAAACACATGAGACATATACCGGTCGCAATTAACCAAT
TGGACTAGCCAGCGTTGACTTGCCTAACTGGTTGATTGGGGCCGTTAAGA
AAAGCTTGTCATGGGTTCGAGTCCCAGGCTGAGACGGTTTTTCCGAAAAA
CTCTGGAGACCCTGGACACTCTGCTTTGAGTATGGGTCTGAGTTGAAAGG
AAGCGGAAGTAATATCAGACGCAAATAGTAGCGCTGGCAAGGGGAGTCAC
CCTCCTTGGAGTGAAAACGTCGGGTCCTTTGGACCCCCCAACTAACTGTT
ATAGCTGTCGCAATCAACCAATTAGACAAGTCAGCGCCGACTTGTCTGAT
TGGTTCATTTTAGCCGCTAAAGACATGAGCCTCAAATCGTAGCCCTAGTA
AAAAACGGTCAGTCGTATCTCGCTAAGCGAGCGGTACTCTTGACACTAGA
TAGTGTGATCGGAAGTCTCAGCATTAACAGGTCTTACACGGGAGGGTGAC
GCTGTGGGTGGGGTAGTTGTTGCAGGCTCGAGATTATCACATAACTCAGA
CGAATACAGAACCTATATTTTATTATAAAATTGGTGCCCAGAGTCCTGGG
TACAGACTTAGACACTATCTTACACACGTCCTATACCCTTTCCTACACTG
AAATGCTGGAGCTTATCACCCTAGCTAGACGGTATATAATAATAAAAGTC
CCTTGAGTAATAATGTATATTGAACCGACTCCAATAGTGGTGTTCTTTCT
CACAAGCGTAATCTATCCGCCTGTTACTATACATCGAGTAACTCTCACAT
GGAATAAACTGCGCCTAAACGAACGAGTTGACGTCCATTGGTCTAGATAG
TCATCTGGACTGAAGTGAAGTGAGTGACGCGGGAACTTATTTTCCTCGTC
GTCAACACTTTTACTTTTGCGTGCCGTAGGTTTCTGCCGGCTACGCGCAC
AGCTGCTGCTGCACGACAGAGGGAGAGCTTTACACATGGGGCAACAACCG
AGACGGTTGCCTAGGCCTGCCTCGGACGACAAAGTTCGCCGATATACCCC
AGGTGAAATCGACGAGAAGGGCACACGACATCAGGACACGTTGACAAGAA
CTTAAATAAATGGCCTTGCGCTGGAAGCCTGCTGCCACAAGAACCCCGCC
AATGACGTAGCATTTTATTTTCAGGGTGACGGAGGAGAAGAAAATCTGCA
TACAATCATCAAGTTAACGTCCCAGAGCGTGCCACGTGGTGTCTTTTGCT
CTGAGTACAAACGTTTGTAAAATGCTAGGACATTAGACTACTCGTAAGCT
GACCGCGATGTATTACGAGTAGAATGAGTTACTTCTCCATAGGCGGGTCG
TTCAGCACCACGCGACATTTCTTACATGGAGCTAACCTCTTACGTAGCGC
TAACCACCTCGGCGCTTTTTTGCCGCGACCGAAGACTTGACTTTTTCCCC
CCCGCGGATAGCTGAAGATATGCTGCTTTCCACCTTGTCGTTCCCGCCTC
TTTCCCCTCCTCCCCCCAACCCTTGGAACAATTGAAAACGCCAAAATGCG
CGCAAAGCTGGTGTCCTGTCTATACGCGAAACCCACCAACTTGGCGCTCG
GCCGCCCTACGCGGCAGAGCAGCGTGTACGATAACCTCGGTTCCGAAATA
GCAGTGGACGGCGACCGTTCGGGTGACAGCTACCGAAAATGCAGCTGCAC
GCAGCAGGACCCTCAGGGATGGTGGGAAGTCGACATGGGGCGCCTGGTGA
ACCTGCACGAAGTCAAGGTACCATTTATATGGAGAAAAAATGTTACACCC
GCTTGGGGCGGTCTACGCGCGTGTCAGAGAGAACTTTTATCCCATGTTTT
TGCCCCGGGGGCATTCTTTTGTTTTGGGGGGGACGAACCCGAAGCCAAGG
GCGAGGGGGGGTGAATGACATGACCAGAATTGCGCCAGAAAGGAGGACTG
GGTCGCTGTACGTAACGTTTTTTTTACATCGGAGTTTCGAAGCACTCCTC
CTTCTTACCCTTTGTCTCTTTGTTTTATGTGACTGGTACCGTATCTTATC
TTCACCCTTTGAAACGCATCTTCTGCTTGTTGGCCTCCGCTGATTCGCGG
TGTTTGCGTCAAGATCTGGAACAGGTGTGACGAGCCCGCAGATCCTTCAG
CGGAGCGCAAACTTTACGCCAAGCGCTTGTTCCCGTGCTGGATCATGGCC
TCTCAAGAACCTTTCAAAGACGACGTCGGCAAGGCGTCCTTGATCGACGC
CATGGACACAGCCGTTGCCCGCGCTCACTTGAAAGAGGTCCGAGTAAGCC
TCAAACTTTTTAAGAGCCGCTATTTAATACAGAAGAAACTCATTATTATT
GGGTTCCTCGGGAAAAAAAGTTTGTTGCCAAGGTGATTCTACTAACGCGC
CCTTGCTCGAAACCATACCCTCGCATCTAACAACGGACCATCTGTCGTCG
AGTTGGCGATGACTGAACGGTTGATTCGATCGGCCCCCGAATCGTGCCAA
ACACCGCGTACCGGAACAAACGCGTCTCACCTACGTTTATAAAAACAAAA
AACCACGATGCTCTCTCCGACTCTCTCGCGCCAGGAACATCGATGTTCGG
TTTGGAAGTGTCCGAACCTGACTTTGGCGCGTTTTGTACGAGTCCAGTTG
GAAGGCTTCGACTTCCTCCACCTAGCACAGGTTTCAAGCCATGCAGTGTA
GCGCGGGCCAGAAAAAAACGCGTAGTGTTTTTCTATAGAAAATTGCTCCT
TCCGCACCGAGGAGAGGCACAAATGTTTACCGCGCATTAGCATTCTTTAA
TAGCGCACGGATATTAGATACCTACGAGAACGGACAACTCTTTTGCACTG
CGCCCCTATTTCGCCTGGTGTTTTTGTTTCTCTCTCGCGGTGACACCGAA
TTCACCAAAACATGACCCTTGAAAGAAAGGTCGAAGTTTTCGGGACGGAG
GGGGGGCGCCGGATGGCAGGAAAGGTGACCCAGTGCTCCGCGGGGAAGTA
CGTCACCACCGCAGTCATGGCAGCGGCCGACGACCCGCGCGACGTGGACC
TCGCCTATAAGAGGGCTGTTCAGGCAGACGCCTTCAACGCCGAGGTGCTG
CGGCAGCTGGAGACCTTCTTCGGTGCCTACGACCAGTGGGGGAGAGGAGA
CGTCATGCAGGTTGGGTGA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig954:119237..130905-

>mRNA_A-nodosum_M_contig954.20.1 ID=mRNA_A-nodosum_M_contig954.20.1|Name=mRNA_A-nodosum_M_contig954.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1443bp|location=Sequence derived from alignment at A-nodosum_M_contig954:119237..130905- (Ascophyllum nodosum dioecious)
ATGAGTAAGAAGGGCAAGGAGGCGAGATGTGAGAATCTCCGTCTAGAAAT
CGAACAAATGTGGGATCCGCTGAGGGAGATACAGCTAGACGACGCGGCCG
ACAAGAGGAGGAGCGCGGAGGCTGGTTTTGGCAACGCATTCATAGCAGCG
GAAACGATCTACAGGGATTGGCGGGAGCACATCAGGAAAGCGCGAGATGA
GGCGAAACCGGTCTTCACACCACGGGGGAACAGCCTGCAACTTAGCCTGG
GGGGCCTGACGGACAGGGCTGGTGATATCCAAACCCCGCGGGCAAACGAT
GCGGCCATAACGATGTCGGCCGGAGCGAACCACGTCTTGCTCGTGCATCG
ATCGGGGCAGCTCTACACCTGGGGCGTTGGCGCGAGCGGTCGGCTAGGCC
TCGACCTCACACAGGGTGGCAACCCTCAGCTGGGTCTCGGCAAAGTTGAT
GAAGGCGTGTACTGCAGCGTGCCAACCAGAGTCATGCTGGGCTCGATCTC
CAAGGTTAAAGAGATAAGCTGTGGCGCGGCACACACTGCGTGTGTAACGG
CGTCGGGGCAGCTTTTTGTCTGGGGCTGCGGCGACGGCGGGCGCCTGGGT
CTGGGAGAAGAGCGGCTGGGCCCTCAATTCGAGCCGGTTCTCGTGGAAAC
TCTTGCGTTGGTGGGAGAAAAAATGTGCTCTGTCAGCTGCGGAAATGCGC
ACACTCTGGCACTGACGGCGGTGCGAGAGGTACTAGGCGGCGAAGGGCCG
AGCCGCACGAAACGGAAACAAGGAGGACGGATATTTCAAGCGGGATCGAC
CAACGTTCTCGGCACTTTCTGTCCAGCCTTCACACCCGTGCGATGCATGG
ATGACGTCACGGTCAGGCAGGTTTCTGCCGGCTACGCGCACAGCTGCTGC
TGCACGACAGAGGGAGAGCTTTACACATGGGGCAACAACCGAGACGGTTG
CCTAGGCCTGCCTCGGACGACAAAGTTCGCCGATATACCCCAGCTGGTGT
CCTGTCTATACGCGAAACCCACCAACTTGGCGCTCGGCCGCCCTACGCGG
CAGAGCAGCGTGTACGATAACCTCGGTTCCGAAATAGCAGTGGACGGCGA
CCGTTCGGGTGACAGCTACCGAAAATGCAGCTGCACGCAGCAGGACCCTC
AGGGATGGTGGGAAGTCGACATGGGGCGCCTGGTGAACCTGCACGAAGTC
AAGGTCGAAGTTTTCGGGACGGAGGGGGGGCGCCGGATGGCAGGAAAGGT
GACCCAGTGCTCCGCGGGGAAGTACGTCACCACCGCAGTCATGGCAGCGG
CCGACGACCCGCGCGACGTGGACCTCGCCTATAAGAGGGCTGTTCAGGCA
GACGCCTTCAACGCCGAGGTGCTGCGGCAGCTGGAGACCTTCTTCGGTGC
CTACGACCAGTGGGGGAGAGGAGACGTCATGCAGGTTGGGTGA
back to top