mRNA_A-nodosum_M_contig953.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: D7FJ00_ECTSI (Suppressor of lin-12-like protein-related / sel-1 protein-related n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ00_ECTSI) HSP 1 Score: 139 bits (351), Expect = 2.750e-33 Identity = 68/111 (61.26%), Postives = 85/111 (76.58%), Query Frame = 2
Query: 278 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPR 610
GPW +RLR FDCYLQGD+L AL +YSEAAELGY+VAASNAAF+LD K+R+ D + + + VW+ETM++R H MAAT+G+ PSF+AIGDAFFYGR+GLPR
Sbjct: 796 GPWGRRLRLAFDCYLQGDMLSALTMYSEAAELGYEVAASNAAFLLDEGKLRL--------DGELFQGGRSAPVWSETMAVRLHIMAATKGYAPSFLAIGDAFFYGRAGLPR 898
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A7S2WD54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WD54_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.240e-27 Identity = 72/194 (37.11%), Postives = 103/194 (53.09%), Query Frame = 2
Query: 278 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKV---------------RIAVDKQRREDMNIAEDRSES--------------------KVWTETMSIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERA 754
G W R+R GFD +L G+ L AL LY EAAELGY++A SNAA+ILDR V ++ +D + E R + ++W ++ +H AA + + S++A+GDA+FYG DP A WWYS+ASA G+ +G++NLGYMYE GLGV + + A +Y +A
Sbjct: 394 GQWGGRVREGFDAFLGGNPLTALLLYFEAAELGYEIAESNAAYILDRALVDAPALLLDAPASSGPMLSAPPGTGQDQDATEHRDQGMLPAVVANRGKTFASGSQTHRLW----ALHYHRRAAGQDNFESYLALGDAYFYGLGVSQPDPEAAVWWYSKASAHGVAKGAHNLGYMYEKGLGVPQSYIRAERHYRKA 583
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A836CMH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH3_9STRA) HSP 1 Score: 115 bits (288), Expect = 4.200e-25 Identity = 69/166 (41.57%), Postives = 91/166 (54.82%), Query Frame = 2
Query: 278 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWT---ETMSIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERARKKA 766
G W R+R GFDC+L D CA Y+EAAELG+DVAA+NAA++L + A+ Q + N+A ++R H MAA G +F+A+GDAF G G PRD A WWY RAS +G RG LG ++E G ++R AL Y RA + A
Sbjct: 263 GAWGDRVRTGFDCHLARDAACAFMAYAEAAELGFDVAAANAAYVLGAPRD-AAMLAQLWPNQNLAXXXXXXXXXXXXRRAAALRLHLMAAAAGDAEAFMALGDAFAQGAGGYPRDAGRALWWYGRASTAGFARGVVALGALHERGGDLQRALAL----YARAARMA 423
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A8K1CM62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CM62_PYTOL) HSP 1 Score: 102 bits (253), Expect = 2.460e-20 Identity = 60/160 (37.50%), Postives = 84/160 (52.50%), Query Frame = 2
Query: 275 MGPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIRFHSMAA-TEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYER 751
+G W +R+R GFD +L GD A LY +A E GY +A SN A++ D++ ++ E + TE ++ + + G V IGD FYG +GL R+P A WYSRAS G G+YN+G+MYE+GLGV + A YY R
Sbjct: 989 VGQWGRRVRQGFDLFLAGDYERAAILYHDAQEHGYAIATSNLAYLYDQKLLQ------------------EGDILTEQRALAYLLRTSQVNGDKEVLVRIGDYHFYGLAGLTRNPKEAMRWYSRASTEGAEAGAYNVGHMYEYGLGVEINHDRAERYYRR 1130
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: D8SKF6_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKF6_SELML) HSP 1 Score: 100 bits (250), Expect = 4.980e-20 Identity = 66/162 (40.74%), Postives = 93/162 (57.41%), Query Frame = 2
Query: 278 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIRFHSM---AATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERA 754
GPW LR G + YL+G++ +L LYS AAELGY+VA SNAA+ILD K E + I ++ E R H++ A+ +G+ + + IGDA++YGR G +D A+ Y RA + YN+GYM+EHGLG+ +DF LA YY+ A
Sbjct: 440 GPWGALLRWGLESYLKGEIALSLLLYSRAAELGYEVAQSNAAWILD---------KFHEEAVCIGKN---GYCTVEERHHRAHTLWRFASEQGNEYAALLIGDAYYYGR-GTVKDLDRAAEAYMRARLQFNAQAMYNIGYMHEHGLGLPKDFHLAKRYYDLA 588
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: K3X201_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X201_GLOUD) HSP 1 Score: 99.8 bits (247), Expect = 6.860e-20 Identity = 63/159 (39.62%), Postives = 85/159 (53.46%), Query Frame = 2
Query: 278 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIRFHSMAATE-GHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYER 751
G W K +R GF+ YL D A ALY EA E GY VA SN AF+ D++ + A D K ++++ +A+ + G + V IGD FYG +GLP D A WYSRASA + G+YN+G+MYE+G+GV + A YY R
Sbjct: 298 GRWGKCVRKGFERYLNNDFQRAAALYHEAREYGYPVATSNLAFLYDQKLLASA-------------DLESGK-----RALQYLQLASLQNGDQETLVRIGDYHFYGLAGLPPDSHEAIRWYSRASAEEVADGAYNVGHMYEYGIGVPVNLERAERYYRR 438
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A7S2CTI2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTI2_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.290e-18 Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 2
Query: 512 SIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERARKKALANDGLDQHLSGMPIEVLISLAKLRV 844
S+ FH +AA + + S VAIGDAFFYGRS D A WWYS+A+ +G+ +G++NLGYMYE GLG + +W+ ER +KA G D SG + + S+A LRV
Sbjct: 16 SLHFHRLAAEQNNKDSLVAIGDAFFYGRSMHAPDHRAAMWWYSKAATAGIAKGAHNLGYMYERGLGAPQ----SWSRAERHYRKAAELSGGDW--SGKVV-LYASMALLRV 119
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A2K1IYB9_PHYPA (Uncharacterized protein n=8 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IYB9_PHYPA) HSP 1 Score: 95.9 bits (237), Expect = 2.480e-18 Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = 2
Query: 278 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIR----FHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERA 754
GPW ++ +CYL+G AL LYS AAELGY+V SNAA+IL+ K E + + + S V T+ R S ++ +G+ + + IGDA++YGR G ++ A+ Y +A + +NLGYMYEHGLG+ +DF LA YY++A
Sbjct: 444 GPWGSLMKWALECYLKGQTAKALLLYSRAAELGYEVGQSNAAWILE---------KYHNEGICLGQ----SGVCTDAERHRRAHILWSYSSEQGNEHAALLIGDAYYYGR-GAEKNLDRAAEAYRKAQLQQNSQAMFNLGYMYEHGLGLPKDFHLAKRYYDQA 592
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: UPI0009014E97 (LOW QUALITY PROTEIN: ERAD-associated E3 ubiquitin-protein ligase component HRD3B-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI0009014E97) HSP 1 Score: 95.5 bits (236), Expect = 3.300e-18 Identity = 66/173 (38.15%), Postives = 90/173 (52.02%), Query Frame = 2
Query: 278 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVR--------IAVDKQRREDMNIAEDRSESKVWTETMSIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERARKKALA 772
GPW+ R + YL+GDV A LYS AELGY+VA SNAA+ILD+ R DK+R DR+ S W A+ +G+ + + IGDA++YGR G RD A+ Y A + + +NLGYM+EHG G+ D LA YY++A + A
Sbjct: 412 GPWSSLSRWALEAYLKGDVGKAFMLYSRMAELGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERH-------DRAHSLWWR----------ASEQGNEHAALLIGDAYYYGR-GTERDFVRAAEAYMYAKSQSNAQAMFNLGYMHEHGEGLPFDLHLAKRYYDQALQSTAA 566
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A8K0HYL3_COCNU (ERAD-associated E3 ubiquitin-protein ligase component HRD3 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0HYL3_COCNU) HSP 1 Score: 95.1 bits (235), Expect = 4.390e-18 Identity = 66/163 (40.49%), Postives = 92/163 (56.44%), Query Frame = 2
Query: 278 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTET-MSIRFHSM---AATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERA 754
GPW+ R + YL+GDV AL LYS AELGY+VA SNAA+ILD K + M + E S + T+T + HS+ A+ +G+ + + IGDA++YGR G RD A+ Y A + + +NLGYM+EHG G+ D LA YY++A
Sbjct: 455 GPWSALSRWALESYLKGDVGKALLLYSRMAELGYEVAQSNAAWILD---------KYGEQSMCMGE----SGLCTDTERHLHAHSLWWQASEQGNEHAALLIGDAYYYGR-GTERDYERAAEAYMHAQSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQA 603 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig953.4.1 >prot_A-nodosum_M_contig953.4.1 ID=prot_A-nodosum_M_contig953.4.1|Name=mRNA_A-nodosum_M_contig953.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=217bp MGPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKback to top mRNA from alignment at A-nodosum_M_contig953:16750..19660+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig953.4.1 ID=mRNA_A-nodosum_M_contig953.4.1|Name=mRNA_A-nodosum_M_contig953.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2911bp|location=Sequence derived from alignment at A-nodosum_M_contig953:16750..19660+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig953:16750..19660+ >mRNA_A-nodosum_M_contig953.4.1 ID=mRNA_A-nodosum_M_contig953.4.1|Name=mRNA_A-nodosum_M_contig953.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=651bp|location=Sequence derived from alignment at A-nodosum_M_contig953:16750..19660+ (Ascophyllum nodosum dioecious)back to top |