prot_A-nodosum_M_contig953.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig953.4.1
Unique Nameprot_A-nodosum_M_contig953.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length217
Homology
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: D7FJ00_ECTSI (Suppressor of lin-12-like protein-related / sel-1 protein-related n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ00_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.350e-34
Identity = 68/111 (61.26%), Postives = 85/111 (76.58%), Query Frame = 0
Query:    2 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPR 112
            GPW +RLR  FDCYLQGD+L AL +YSEAAELGY+VAASNAAF+LD  K+R+        D  + +    + VW+ETM++R H MAAT+G+ PSF+AIGDAFFYGR+GLPR
Sbjct:  796 GPWGRRLRLAFDCYLQGDMLSALTMYSEAAELGYEVAASNAAFLLDEGKLRL--------DGELFQGGRSAPVWSETMAVRLHIMAATKGYAPSFLAIGDAFFYGRAGLPR 898          
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A7S2WD54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WD54_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.890e-28
Identity = 72/194 (37.11%), Postives = 103/194 (53.09%), Query Frame = 0
Query:    2 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKV---------------RIAVDKQRREDMNIAEDRSES--------------------KVWTETMSIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERA 160
            G W  R+R GFD +L G+ L AL LY EAAELGY++A SNAA+ILDR  V                ++      +D +  E R +                     ++W    ++ +H  AA + +  S++A+GDA+FYG      DP  A WWYS+ASA G+ +G++NLGYMYE GLGV + +  A  +Y +A
Sbjct:  394 GQWGGRVREGFDAFLGGNPLTALLLYFEAAELGYEIAESNAAYILDRALVDAPALLLDAPASSGPMLSAPPGTGQDQDATEHRDQGMLPAVVANRGKTFASGSQTHRLW----ALHYHRRAAGQDNFESYLALGDAYFYGLGVSQPDPEAAVWWYSKASAHGVAKGAHNLGYMYEKGLGVPQSYIRAERHYRKA 583          
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A836CMH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.020e-26
Identity = 69/166 (41.57%), Postives = 91/166 (54.82%), Query Frame = 0
Query:    2 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWT---ETMSIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERARKKA 164
            G W  R+R GFDC+L  D  CA   Y+EAAELG+DVAA+NAA++L   +   A+  Q   + N+A                ++R H MAA  G   +F+A+GDAF  G  G PRD   A WWY RAS +G  RG   LG ++E G  ++R  AL    Y RA + A
Sbjct:  263 GAWGDRVRTGFDCHLARDAACAFMAYAEAAELGFDVAAANAAYVLGAPRD-AAMLAQLWPNQNLAXXXXXXXXXXXXRRAAALRLHLMAAAAGDAEAFMALGDAFAQGAGGYPRDAGRALWWYGRASTAGFARGVVALGALHERGGDLQRALAL----YARAARMA 423          
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A8K1CM62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CM62_PYTOL)

HSP 1 Score: 101 bits (251), Expect = 4.430e-21
Identity = 60/160 (37.50%), Postives = 84/160 (52.50%), Query Frame = 0
Query:    1 MGPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIRFHSMAA-TEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYER 159
            +G W +R+R GFD +L GD   A  LY +A E GY +A SN A++ D++ ++                  E  + TE  ++ +    +   G     V IGD  FYG +GL R+P  A  WYSRAS  G   G+YN+G+MYE+GLGV  +   A  YY R
Sbjct:  989 VGQWGRRVRQGFDLFLAGDYERAAILYHDAQEHGYAIATSNLAYLYDQKLLQ------------------EGDILTEQRALAYLLRTSQVNGDKEVLVRIGDYHFYGLAGLTRNPKEAMRWYSRASTEGAEAGAYNVGHMYEYGLGVEINHDRAERYYRR 1130          
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: D8SKF6_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKF6_SELML)

HSP 1 Score: 100 bits (248), Expect = 9.870e-21
Identity = 66/162 (40.74%), Postives = 93/162 (57.41%), Query Frame = 0
Query:    2 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIRFHSM---AATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERA 160
            GPW   LR G + YL+G++  +L LYS AAELGY+VA SNAA+ILD         K   E + I ++        E    R H++   A+ +G+  + + IGDA++YGR G  +D   A+  Y RA      +  YN+GYM+EHGLG+ +DF LA  YY+ A
Sbjct:  440 GPWGALLRWGLESYLKGEIALSLLLYSRAAELGYEVAQSNAAWILD---------KFHEEAVCIGKN---GYCTVEERHHRAHTLWRFASEQGNEYAALLIGDAYYYGR-GTVKDLDRAAEAYMRARLQFNAQAMYNIGYMHEHGLGLPKDFHLAKRYYDLA 588          
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: K3X201_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X201_GLOUD)

HSP 1 Score: 99.0 bits (245), Expect = 1.510e-20
Identity = 63/159 (39.62%), Postives = 85/159 (53.46%), Query Frame = 0
Query:    2 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIRFHSMAATE-GHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYER 159
            G W K +R GF+ YL  D   A ALY EA E GY VA SN AF+ D++ +  A             D    K      ++++  +A+ + G   + V IGD  FYG +GLP D   A  WYSRASA  +  G+YN+G+MYE+G+GV  +   A  YY R
Sbjct:  298 GRWGKCVRKGFERYLNNDFQRAAALYHEAREYGYPVATSNLAFLYDQKLLASA-------------DLESGK-----RALQYLQLASLQNGDQETLVRIGDYHFYGLAGLPPDSHEAIRWYSRASAEEVADGAYNVGHMYEYGIGVPVNLERAERYYRR 438          
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A7S2CTI2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTI2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.500e-19
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 0
Query:   80 SIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERARKKALANDGLDQHLSGMPIEVLISLAKLRV 190
            S+ FH +AA + +  S VAIGDAFFYGRS    D   A WWYS+A+ +G+ +G++NLGYMYE GLG  +    +W+  ER  +KA    G D   SG  + +  S+A LRV
Sbjct:   16 SLHFHRLAAEQNNKDSLVAIGDAFFYGRSMHAPDHRAAMWWYSKAATAGIAKGAHNLGYMYERGLGAPQ----SWSRAERHYRKAAELSGGDW--SGKVV-LYASMALLRV 119          
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A2K1IYB9_PHYPA (Uncharacterized protein n=8 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IYB9_PHYPA)

HSP 1 Score: 95.1 bits (235), Expect = 5.320e-19
Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = 0
Query:    2 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTETMSIR----FHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERA 160
            GPW   ++   +CYL+G    AL LYS AAELGY+V  SNAA+IL+         K   E + + +    S V T+    R      S ++ +G+  + + IGDA++YGR G  ++   A+  Y +A      +  +NLGYMYEHGLG+ +DF LA  YY++A
Sbjct:  444 GPWGSLMKWALECYLKGQTAKALLLYSRAAELGYEVGQSNAAWILE---------KYHNEGICLGQ----SGVCTDAERHRRAHILWSYSSEQGNEHAALLIGDAYYYGR-GAEKNLDRAAEAYRKAQLQQNSQAMFNLGYMYEHGLGLPKDFHLAKRYYDQA 592          
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: UPI0009014E97 (LOW QUALITY PROTEIN: ERAD-associated E3 ubiquitin-protein ligase component HRD3B-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI0009014E97)

HSP 1 Score: 94.7 bits (234), Expect = 7.160e-19
Identity = 66/173 (38.15%), Postives = 90/173 (52.02%), Query Frame = 0
Query:    2 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVR--------IAVDKQRREDMNIAEDRSESKVWTETMSIRFHSMAATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERARKKALA 166
            GPW+   R   + YL+GDV  A  LYS  AELGY+VA SNAA+ILD+   R           DK+R        DR+ S  W           A+ +G+  + + IGDA++YGR G  RD   A+  Y  A +    +  +NLGYM+EHG G+  D  LA  YY++A +   A
Sbjct:  412 GPWSSLSRWALEAYLKGDVGKAFMLYSRMAELGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERH-------DRAHSLWWR----------ASEQGNEHAALLIGDAYYYGR-GTERDFVRAAEAYMYAKSQSNAQAMFNLGYMHEHGEGLPFDLHLAKRYYDQALQSTAA 566          
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Match: A0A8K0HYL3_COCNU (ERAD-associated E3 ubiquitin-protein ligase component HRD3 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0HYL3_COCNU)

HSP 1 Score: 94.4 bits (233), Expect = 9.640e-19
Identity = 66/163 (40.49%), Postives = 92/163 (56.44%), Query Frame = 0
Query:    2 GPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRKVRIAVDKQRREDMNIAEDRSESKVWTET-MSIRFHSM---AATEGHVPSFVAIGDAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDFALAWTYYERA 160
            GPW+   R   + YL+GDV  AL LYS  AELGY+VA SNAA+ILD         K   + M + E    S + T+T   +  HS+   A+ +G+  + + IGDA++YGR G  RD   A+  Y  A +    +  +NLGYM+EHG G+  D  LA  YY++A
Sbjct:  455 GPWSALSRWALESYLKGDVGKALLLYSRMAELGYEVAQSNAAWILD---------KYGEQSMCMGE----SGLCTDTERHLHAHSLWWQASEQGNEHAALLIGDAYYYGR-GTERDYERAAEAYMHAQSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQA 603          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig953.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ00_ECTSI3.350e-3461.26Suppressor of lin-12-like protein-related / sel-1 ... [more]
A0A7S2WD54_9STRA1.890e-2837.11Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A836CMH3_9STRA7.020e-2641.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1CM62_PYTOL4.430e-2137.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D8SKF6_SELML9.870e-2140.74Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
K3X201_GLOUD1.510e-2039.62Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2CTI2_9STRA3.500e-1945.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2K1IYB9_PHYPA5.320e-1938.04Uncharacterized protein n=8 Tax=Physcomitrium pate... [more]
UPI0009014E977.160e-1938.15LOW QUALITY PROTEIN: ERAD-associated E3 ubiquitin-... [more]
A0A8K0HYL3_COCNU9.640e-1940.49ERAD-associated E3 ubiquitin-protein ligase compon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 130..165
e-value: 1.5E-6
score: 37.8
coord: 93..129
e-value: 3.2
score: 16.7
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 100..128
e-value: 0.03
score: 15.0
coord: 23..35
e-value: 180.0
score: 3.0
coord: 134..160
e-value: 2.7E-6
score: 27.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 8..187
e-value: 1.4E-21
score: 78.4
IPR044623ERAD-associated E3 ubiquitin-protein ligase component HRD3PANTHERPTHR45084ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATEDcoord: 2..164
NoneNo IPR availablePANTHERPTHR45084:SF1ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATEDcoord: 2..164
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 15..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig953contigA-nodosum_M_contig953:17024..19660 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig953.4.1mRNA_A-nodosum_M_contig953.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig953 16750..19660 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig953.4.1 ID=prot_A-nodosum_M_contig953.4.1|Name=mRNA_A-nodosum_M_contig953.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=217bp
MGPWAKRLRAGFDCYLQGDVLCALALYSEAAELGYDVAASNAAFILDRRK
VRIAVDKQRREDMNIAEDRSESKVWTETMSIRFHSMAATEGHVPSFVAIG
DAFFYGRSGLPRDPAIASWWYSRASASGLVRGSYNLGYMYEHGLGVRRDF
ALAWTYYERARKKALANDGLDQHLSGMPIEVLISLAKLRVMNVRRSYLRI
RFNTSWTNHVRACGEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf
IPR044623HRD3