mRNA_A-nodosum_M_contig949.9.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig949.9.2
Unique NamemRNA_A-nodosum_M_contig949.9.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.130e-35
Identity = 79/141 (56.03%), Postives = 98/141 (69.50%), Query Frame = 1
Query:   10 NTTIYVDRASKKASIVDIVKMVLECDSDEAKAALRKL-GAIPDEERR----QINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEARHIAMREASLLAHAHADDEA-DQYHDMPTSFKFL 414
            +  I VDRAS K S+ D+ K+VL+CD +EA+ A+RKL GA  D +R     QINNRGRLT VA V++L+EI+WLLPG I DDV   +SH VC+ LGGD  L  E+E RHIAMREASL  HA+A   A DQ  D+P  + FL
Sbjct:    2 DAVIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRLVEESETRHIAMREASL--HANASKVATDQSRDIPPGYSFL 140          
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC)

HSP 1 Score: 98.6 bits (244), Expect = 8.550e-22
Identity = 63/170 (37.06%), Postives = 89/170 (52.35%), Query Frame = 1
Query:    1 SFENTTIYVDRASKKASIVDIVKMVLECDSDEAKAALRKLGA-----IPDEERRQINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEARHIAMREAS--------LLAHAHAD---------DEADQYHDMPTSFKFLSAEDREELAK 444
            + E+++I VD+ASKK S++D VKMVL C S      LR+L         D  R +IN +G  TPVAD  +L++++ LLPG    +   K +  VCRLLGGD +L  E E R   ++ +         LL    AD          + D+Y  MP  F+FL A D+  +AK
Sbjct:    7 NMESSSIRVDKASKKGSVIDTVKMVLGCTSSSGNTNLRRLTTRFPDLCVDITRLRINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQRCATLQRSPEGRVIQDILLGDGDADRSVVTSSTSSQIDKYEGMPAGFRFLDASDQHRVAK 176          
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 92.0 bits (227), Expect = 1.790e-18
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 SFENTTIYVDRASKKASIVDIVKMVLECDSDEAKAALRKL-----GAIPDEERRQINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEARHIAM 330
            S + +TI VD+ +K  S++D ++MVLECDS  A  +L +L     G      + ++N RG+ TPVAD   LIEI+WLLPG        +    +CRLLGGD +L  E EARH  +
Sbjct:   24 SMDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATL 138          
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: B5LWF9_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF9_9PHYC)

HSP 1 Score: 86.3 bits (212), Expect = 6.100e-18
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    7 ENTTIYVDRASKKASIVDIVKMVLECDSDEAKAALRKLGA-IPDE----ERRQINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEAR 318
            EN++I VD+ASKK S++D V+MVL C S      LR L +  PD      RR+IN +GR TPVAD  +L++I+ LLPG    +   K +  VCRLLGG  +L  E + R
Sbjct:    9 ENSSIRVDKASKKGSVIDTVRMVLGCTSSAGNTYLRNLTSRFPDICVQITRRRINGKGRATPVADTTLLVQIVLLLPGQKAIEFRRKSAEKVCRLLGGGTSLVVEMDQR 117          
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: A0A835Z1M0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.520e-15
Identity = 59/214 (27.57%), Postives = 103/214 (48.13%), Query Frame = 1
Query:   10 NTTIYVDRASKKASIVDIVKMVLECDSDEAKAALR-KLGAIPDEERRQINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEARHIAMR------EASLLAHAHADDEADQYHD-------MPTSFKFLSAEDR---------EELAKKCMSLKRKRCDDIVSCYQLLEELGITLDAHAKVHILESVAILTKQD 582
            NT I VD A++  S++D++ ++   +S+  K   R     I    + +IN +G+LTP AD   L+E++W LPG    D   + +  VCR+LGGD  L  E EARH A++       A     A +DD  D +         +P   +  +AE +         +  A + M L++++ D+  S +    E    LD   ++ +++++  +  QD
Sbjct:    7 NTCIRVDNATQMGSVIDVINLINPYESNAPKTLTRLPQDLIAKCSQLRINGKGKLTPCADAQTLVEVVWSLPGKAARDFRRESAKAVCRVLGGDLTLADEIEARHHALQGSDEGQAAQAFMLADSDDSGDGFRTTKRVKSLLPDELQLATAEQQSAYFDGWMVDRNADRKMVLQKRQFDN-TSYFMSEMERQDMLDPALRIAMIDTLKNIATQD 219          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K2U9_9PHAE1.130e-3556.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWF8_9PHYC8.550e-2237.06Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWM4_9PHYC1.790e-1842.61Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWF9_9PHYC6.100e-1845.87Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A835Z1M0_9STRA8.520e-1527.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig949contigA-nodosum_M_contig949:236748..237445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP49
Model size609
Max annot lvl2880.D8LP49|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.22e-15
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870448.802947-UTR-A-nodosum_M_contig949:236747..2369991680870448.802947-UTR-A-nodosum_M_contig949:236747..236999Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig949 236748..236999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870448.823641-CDS-A-nodosum_M_contig949:236999..2371961680870448.823641-CDS-A-nodosum_M_contig949:236999..237196Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig949 237000..237196 +
1680870448.8393672-CDS-A-nodosum_M_contig949:237285..2374451680870448.8393672-CDS-A-nodosum_M_contig949:237285..237445Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig949 237286..237445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig949.9.2prot_A-nodosum_M_contig949.9.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig949 237000..237445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig949.9.2

>prot_A-nodosum_M_contig949.9.2 ID=prot_A-nodosum_M_contig949.9.2|Name=mRNA_A-nodosum_M_contig949.9.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MSHTVCRLLGGDANLEPETEARHIAMREASLLAHAHADDEADQYHDMPTS
FKFLSAEDREELAKKCMSLKRKRCDDIVSCYQLLEELGITLDAHAKVHIL
ESVAILTKQDVGIDGKLI*
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mRNA from alignment at A-nodosum_M_contig949:236748..237445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig949.9.2 ID=mRNA_A-nodosum_M_contig949.9.2|Name=mRNA_A-nodosum_M_contig949.9.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=698bp|location=Sequence derived from alignment at A-nodosum_M_contig949:236748..237445+ (Ascophyllum nodosum dioecious)
AGCTTCGAAAACACCACGATATACGTCGACCGTGCATCAAAGAAGGCCTC GATAGTAGACATAGTCAAAATGGTGCTAGAGTGCGACTCAGACGAGGCCA AAGCTGCCCTTCGTAAGCTCGGCGCCATCCCCGATGAGGAGCGACGCCAA ATAAACAACAGAGGAAGACTTACGCCCGTCGCAGACGTTGACGTGCTCAT TGAAATCATGTGGCTTCTGCCCGGCAACATTCCGGATGACGTTCCTTGAA AAATGTCGCACACGGTGTGTCGCTTACTCGGTGGCGACGCGAACCTCGAG CCCGAGACTGAGGCACGTCACATCGCGATGAGGGAAGCAAGCTTGCTCGC TCACGCCCATGCTGATGATGAGGCGGACCAGTATCATGATATGCCGACCA GCTTCAAGTTTCTTTCCGCCGAAGATCGTGAGGAGCTCGCGAAGAAATGG TTGAATTATCCCTAAAAGGCAGGGATCAGGACCTCCAAAGAGGGTACCAG GACCTTCGACGGAAGGATCATGAAATCCAAGAAAAGAGCATGTCGCTAAA ACGTAAGCGCTGTGACGATATTGTATCTTGCTACCAGTTGCTGGAAGAGC TCGGTATTACACTCGATGCTCACGCCAAAGTGCACATTCTCGAAAGCGTT GCAATTCTCACAAAACAAGACGTCGGCATCGACGGCAAGTTGATTTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig949:236748..237445+

>mRNA_A-nodosum_M_contig949.9.2 ID=mRNA_A-nodosum_M_contig949.9.2|Name=mRNA_A-nodosum_M_contig949.9.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig949:236748..237445+ (Ascophyllum nodosum dioecious)
ATGTCGCACACGGTGTGTCGCTTACTCGGTGGCGACGCGAACCTCGAGCC
CGAGACTGAGGCACGTCACATCGCGATGAGGGAAGCAAGCTTGCTCGCTC
ACGCCCATGCTGATGATGAGGCGGACCAGTATCATGATATGCCGACCAGC
TTCAAGTTTCTTTCCGCCGAAGATCGTGAGGAGCTCGCGAAGAAATGCAT
GTCGCTAAAACGTAAGCGCTGTGACGATATTGTATCTTGCTACCAGTTGC
TGGAAGAGCTCGGTATTACACTCGATGCTCACGCCAAAGTGCACATTCTC
GAAAGCGTTGCAATTCTCACAAAACAAGACGTCGGCATCGACGGCAAGTT
GATTTAA
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