mRNA_A-nodosum_M_contig949.9.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.130e-35 Identity = 79/141 (56.03%), Postives = 98/141 (69.50%), Query Frame = 1
Query: 10 NTTIYVDRASKKASIVDIVKMVLECDSDEAKAALRKL-GAIPDEERR----QINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEARHIAMREASLLAHAHADDEA-DQYHDMPTSFKFL 414
+ I VDRAS K S+ D+ K+VL+CD +EA+ A+RKL GA D +R QINNRGRLT VA V++L+EI+WLLPG I DDV +SH VC+ LGGD L E+E RHIAMREASL HA+A A DQ D+P + FL
Sbjct: 2 DAVIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRLVEESETRHIAMREASL--HANASKVATDQSRDIPPGYSFL 140
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC) HSP 1 Score: 98.6 bits (244), Expect = 8.550e-22 Identity = 63/170 (37.06%), Postives = 89/170 (52.35%), Query Frame = 1
Query: 1 SFENTTIYVDRASKKASIVDIVKMVLECDSDEAKAALRKLGA-----IPDEERRQINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEARHIAMREAS--------LLAHAHAD---------DEADQYHDMPTSFKFLSAEDREELAK 444
+ E+++I VD+ASKK S++D VKMVL C S LR+L D R +IN +G TPVAD +L++++ LLPG + K + VCRLLGGD +L E E R ++ + LL AD + D+Y MP F+FL A D+ +AK
Sbjct: 7 NMESSSIRVDKASKKGSVIDTVKMVLGCTSSSGNTNLRRLTTRFPDLCVDITRLRINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQRCATLQRSPEGRVIQDILLGDGDADRSVVTSSTSSQIDKYEGMPAGFRFLDASDQHRVAK 176
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC) HSP 1 Score: 92.0 bits (227), Expect = 1.790e-18 Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 1 SFENTTIYVDRASKKASIVDIVKMVLECDSDEAKAALRKL-----GAIPDEERRQINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEARHIAM 330
S + +TI VD+ +K S++D ++MVLECDS A +L +L G + ++N RG+ TPVAD LIEI+WLLPG + +CRLLGGD +L E EARH +
Sbjct: 24 SMDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATL 138
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: B5LWF9_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF9_9PHYC) HSP 1 Score: 86.3 bits (212), Expect = 6.100e-18 Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 7 ENTTIYVDRASKKASIVDIVKMVLECDSDEAKAALRKLGA-IPDE----ERRQINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEAR 318
EN++I VD+ASKK S++D V+MVL C S LR L + PD RR+IN +GR TPVAD +L++I+ LLPG + K + VCRLLGG +L E + R
Sbjct: 9 ENSSIRVDKASKKGSVIDTVRMVLGCTSSAGNTYLRNLTSRFPDICVQITRRRINGKGRATPVADTTLLVQIVLLLPGQKAIEFRRKSAEKVCRLLGGGTSLVVEMDQR 117
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Match: A0A835Z1M0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M0_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 8.520e-15 Identity = 59/214 (27.57%), Postives = 103/214 (48.13%), Query Frame = 1
Query: 10 NTTIYVDRASKKASIVDIVKMVLECDSDEAKAALR-KLGAIPDEERRQINNRGRLTPVADVDVLIEIMWLLPGNIPDDVP*KMSHTVCRLLGGDANLEPETEARHIAMR------EASLLAHAHADDEADQYHD-------MPTSFKFLSAEDR---------EELAKKCMSLKRKRCDDIVSCYQLLEELGITLDAHAKVHILESVAILTKQD 582
NT I VD A++ S++D++ ++ +S+ K R I + +IN +G+LTP AD L+E++W LPG D + + VCR+LGGD L E EARH A++ A A +DD D + +P + +AE + + A + M L++++ D+ S + E LD ++ +++++ + QD
Sbjct: 7 NTCIRVDNATQMGSVIDVINLINPYESNAPKTLTRLPQDLIAKCSQLRINGKGKLTPCADAQTLVEVVWSLPGKAARDFRRESAKAVCRVLGGDLTLADEIEARHHALQGSDEGQAAQAFMLADSDDSGDGFRTTKRVKSLLPDELQLATAEQQSAYFDGWMVDRNADRKMVLQKRQFDN-TSYFMSEMERQDMLDPALRIAMIDTLKNIATQD 219 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig949.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig949.9.2 >prot_A-nodosum_M_contig949.9.2 ID=prot_A-nodosum_M_contig949.9.2|Name=mRNA_A-nodosum_M_contig949.9.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp MSHTVCRLLGGDANLEPETEARHIAMREASLLAHAHADDEADQYHDMPTSback to top mRNA from alignment at A-nodosum_M_contig949:236748..237445+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig949.9.2 ID=mRNA_A-nodosum_M_contig949.9.2|Name=mRNA_A-nodosum_M_contig949.9.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=698bp|location=Sequence derived from alignment at A-nodosum_M_contig949:236748..237445+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig949:236748..237445+ >mRNA_A-nodosum_M_contig949.9.2 ID=mRNA_A-nodosum_M_contig949.9.2|Name=mRNA_A-nodosum_M_contig949.9.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig949:236748..237445+ (Ascophyllum nodosum dioecious)back to top |