mRNA_A-nodosum_M_contig948.5.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 4.550e-12 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKAD 177
PNT+ EAMS PQ WK A KE+ +L+KH+VY LVP SVP+G+K++G++ V K D
Sbjct: 186 PNTYDEAMSSPQREEWKGACSKEMYNLRKHNVYILVPLSSVPEGEKILGTKFVFKKTLD 244
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 8.540e-12 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKAD 177
PNT+ +AMS PQ WK KE+A L+KH+VY LVP SVP G K++G++ V K D
Sbjct: 807 PNTYDKAMSYPQREEWKGVCSKEVADLRKHNVYNLVPLSSVPKGDKILGTKFVFKKMLD 865
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 5.580e-11 Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKA 174
P T++EAM A +WKAA DKE+ SLK HDV +LVP S+P G K +GSR + K+KA
Sbjct: 890 PTTYQEAMRSMDADQWKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKA 947
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 7.560e-11 Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKA 174
P T++EAM A +WKAA DKEI SLK HDV +LVP +P G K +GSR + K+KA
Sbjct: 326 PTTYQEAMRSMDADQWKAAMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKA 383
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A067MMT3_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MMT3_9AGAM) HSP 1 Score: 59.3 bits (142), Expect = 3.000e-10 Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKAD 177
P T+ EA + P A W+ ++E+AS++KH+VYELVP SVP G+K++ ++ K+K D
Sbjct: 7 PATWTEACNSPYADNWREGYEEELASIRKHEVYELVPRSSVPKGRKVIQNKPCFKLKRD 65
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 6.790e-10 Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKAD 177
P T +EA + P A+W AA++EIASLK+ +YELVP +VP G+K S+ V K KAD
Sbjct: 989 PRTIQEARATPDRAQWNTAAEREIASLKERQLYELVPRTAVPPGRKRTKSKWVFKSKAD 1047
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A5K1JUY4_9APHY (AHL receptor (Quorum sensing LuxR family sensor regulator) n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1JUY4_9APHY) HSP 1 Score: 58.9 bits (141), Expect = 1.110e-8 Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIK 171
P T KEAMS P AA+W+AA +E AS++ H+V++LVP SVP G+K++ + V ++K
Sbjct: 207 PVTMKEAMSSPFAAQWRAALLEEFASIRAHEVFDLVPRTSVPVGRKVLTGKPVFRLK 263
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5JLX1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX1_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 2.340e-8 Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1
Query: 37 AARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKA 174
A +WKAA DKE+ SLK HDV +LVP S+P G K +GSR + K+KA
Sbjct: 3 ADQWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKA 48
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 9.030e-8 Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1
Query: 37 AARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKA 174
A +WKAA DKE+ SLK HDV +LVP S+P G K +GSR + K+KA
Sbjct: 6 ADQWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKA 51
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: Q55IK1_CRYNB (Integrase catalytic domain-containing protein n=2 Tax=Cryptococcus neoformans TaxID=5207 RepID=Q55IK1_CRYNB) HSP 1 Score: 54.3 bits (129), Expect = 4.860e-7 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIK 171
P +++ AM+ PQA+ W+AAAD E+ASL K V+ VP S+P K+V + V K+K
Sbjct: 983 PRSWRSAMASPQASDWRAAADDEMASLIKAQVFHYVPRSSLPPQSKVVSCKWVFKVK 1039 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig948.5.1 >prot_A-nodosum_M_contig948.5.1 ID=prot_A-nodosum_M_contig948.5.1|Name=mRNA_A-nodosum_M_contig948.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp MSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKback to top mRNA from alignment at A-nodosum_M_contig948:216831..217007- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig948.5.1 ID=mRNA_A-nodosum_M_contig948.5.1|Name=mRNA_A-nodosum_M_contig948.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at A-nodosum_M_contig948:216831..217007- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig948:216831..217007- >mRNA_A-nodosum_M_contig948.5.1 ID=mRNA_A-nodosum_M_contig948.5.1|Name=mRNA_A-nodosum_M_contig948.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig948:216831..217007- (Ascophyllum nodosum dioecious)back to top |