mRNA_A-nodosum_M_contig948.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig948.5.1
Unique NamemRNA_A-nodosum_M_contig948.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.550e-12
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKAD 177
            PNT+ EAMS PQ   WK A  KE+ +L+KH+VY LVP  SVP+G+K++G++ V K   D
Sbjct:  186 PNTYDEAMSSPQREEWKGACSKEMYNLRKHNVYILVPLSSVPEGEKILGTKFVFKKTLD 244          
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 8.540e-12
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKAD 177
            PNT+ +AMS PQ   WK    KE+A L+KH+VY LVP  SVP G K++G++ V K   D
Sbjct:  807 PNTYDKAMSYPQREEWKGVCSKEVADLRKHNVYNLVPLSSVPKGDKILGTKFVFKKMLD 865          
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.580e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKA 174
            P T++EAM    A +WKAA DKE+ SLK HDV +LVP  S+P G K +GSR + K+KA
Sbjct:  890 PTTYQEAMRSMDADQWKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKA 947          
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.560e-11
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKA 174
            P T++EAM    A +WKAA DKEI SLK HDV +LVP   +P G K +GSR + K+KA
Sbjct:  326 PTTYQEAMRSMDADQWKAAMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKA 383          
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A067MMT3_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MMT3_9AGAM)

HSP 1 Score: 59.3 bits (142), Expect = 3.000e-10
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKAD 177
            P T+ EA + P A  W+   ++E+AS++KH+VYELVP  SVP G+K++ ++   K+K D
Sbjct:    7 PATWTEACNSPYADNWREGYEEELASIRKHEVYELVPRSSVPKGRKVIQNKPCFKLKRD 65          
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.790e-10
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKAD 177
            P T +EA + P  A+W  AA++EIASLK+  +YELVP  +VP G+K   S+ V K KAD
Sbjct:  989 PRTIQEARATPDRAQWNTAAEREIASLKERQLYELVPRTAVPPGRKRTKSKWVFKSKAD 1047          
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A5K1JUY4_9APHY (AHL receptor (Quorum sensing LuxR family sensor regulator) n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1JUY4_9APHY)

HSP 1 Score: 58.9 bits (141), Expect = 1.110e-8
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIK 171
            P T KEAMS P AA+W+AA  +E AS++ H+V++LVP  SVP G+K++  + V ++K
Sbjct:  207 PVTMKEAMSSPFAAQWRAALLEEFASIRAHEVFDLVPRTSVPVGRKVLTGKPVFRLK 263          
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5JLX1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX1_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.340e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   37 AARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKA 174
            A +WKAA DKE+ SLK HDV +LVP  S+P G K +GSR + K+KA
Sbjct:    3 ADQWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKA 48          
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 9.030e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   37 AARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIKA 174
            A +WKAA DKE+ SLK HDV +LVP  S+P G K +GSR + K+KA
Sbjct:    6 ADQWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKA 51          
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Match: Q55IK1_CRYNB (Integrase catalytic domain-containing protein n=2 Tax=Cryptococcus neoformans TaxID=5207 RepID=Q55IK1_CRYNB)

HSP 1 Score: 54.3 bits (129), Expect = 4.860e-7
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 PNTFKEAMSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIK 171
            P +++ AM+ PQA+ W+AAAD E+ASL K  V+  VP  S+P   K+V  + V K+K
Sbjct:  983 PRSWRSAMASPQASDWRAAADDEMASLIKAQVFHYVPRSSLPPQSKVVSCKWVFKVK 1039          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig948.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JF89_9PHAE4.550e-1252.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0G3_9PHAE8.540e-1250.85CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KY84_9PHAE5.580e-1155.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE7.560e-1155.17Integrase catalytic domain-containing protein (Fra... [more]
A0A067MMT3_9AGAM3.000e-1044.07Uncharacterized protein (Fragment) n=1 Tax=Botryob... [more]
A0A6H5JC75_9PHAE6.790e-1050.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5K1JUY4_9APHY1.110e-849.12AHL receptor (Quorum sensing LuxR family sensor re... [more]
A0A6H5JLX1_9PHAE2.340e-858.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVC8_9PHAE9.030e-858.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q55IK1_CRYNB4.860e-745.61Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig948contigA-nodosum_M_contig948:216831..217007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15719283
PFAMsRVT_2,Retrotran_gag_2,rve
Model size177
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.24e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa
DescriptionEncoded by
Cds size156
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870448.1020362-CDS-A-nodosum_M_contig948:216830..2169861680870448.1020362-CDS-A-nodosum_M_contig948:216830..216986Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig948 216831..216986 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870448.112986-UTR-A-nodosum_M_contig948:216986..2170071680870448.112986-UTR-A-nodosum_M_contig948:216986..217007Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig948 216987..217007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig948.5.1prot_A-nodosum_M_contig948.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig948 216831..216986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig948.5.1

>prot_A-nodosum_M_contig948.5.1 ID=prot_A-nodosum_M_contig948.5.1|Name=mRNA_A-nodosum_M_contig948.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
MSLPQAARWKAAADKEIASLKKHDVYELVPAPSVPDGQKLVGSRLVNKIK
AD
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mRNA from alignment at A-nodosum_M_contig948:216831..217007-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig948.5.1 ID=mRNA_A-nodosum_M_contig948.5.1|Name=mRNA_A-nodosum_M_contig948.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at A-nodosum_M_contig948:216831..217007- (Ascophyllum nodosum dioecious)
CCGAACACTTTCAAGGAGGCTATGAGCCTCCCCCAAGCGGCTCGATGGAA GGCGGCGGCAGACAAGGAGATCGCCAGCCTCAAGAAGCATGACGTCTACG AGCTAGTACCTGCGCCCTCCGTCCCTGATGGACAAAAGCTGGTTGGCTCA CGCCTGGTCAACAAGATCAAGGCGGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig948:216831..217007-

>mRNA_A-nodosum_M_contig948.5.1 ID=mRNA_A-nodosum_M_contig948.5.1|Name=mRNA_A-nodosum_M_contig948.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig948:216831..217007- (Ascophyllum nodosum dioecious)
ATGAGCCTCCCCCAAGCGGCTCGATGGAAGGCGGCGGCAGACAAGGAGAT
CGCCAGCCTCAAGAAGCATGACGTCTACGAGCTAGTACCTGCGCCCTCCG
TCCCTGATGGACAAAAGCTGGTTGGCTCACGCCTGGTCAACAAGATCAAG
GCGGAC
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