mRNA_A-nodosum_M_contig946.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig946.1.1
Unique NamemRNA_A-nodosum_M_contig946.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JSJ7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ7_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.190e-45
Identity = 93/229 (40.61%), Postives = 135/229 (58.95%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLADHRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPLSDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP--SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVIFSSGTMIDSRDVTWASIPPLASVLCEQGGKVPTKLQEIESVEGE 681
            VYF++ KS+ ++ F++YLA  R  G P  V  VR+D+A E     F  +CR+  I+QEF  A+SP++N VAER + +I+    AA IQA  ++ G   P   SLWA    W+CNALN T+T +NP+ KSPY+MW+G  PP  + +P LKP   K KRT K EP+A  CFY+GP  N  RD  R++  +   I +R+  W S+    + L +    +  + +E  + E E
Sbjct:   69 VYFLKHKSDAAETFERYLAGKRADGAPCDVMVVRSDNAGE-----FGKVCRKYCIKQEFIPAHSPEYNGVAERTLGLIKDAALAARIQAPTLYPGA--PNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPCLKPAVYKVKRTQKSEPKAQTCFYLGPGINANRDCGRILNDNRQAITTRNFAWQSVLAAPTALPQSLPPIAEEEEEFATGEDE 290
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5KJH0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.310e-25
Identity = 76/235 (32.34%), Postives = 116/235 (49.36%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGI------AMIESTEKAALIQAKCMFSGMVIPLSDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPPLASVLCEQGGKVPTKLQEIESVEG 678
            VY +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I       M+     A ++  +      + P  D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P       +GG     L+E+    G
Sbjct:  354 VYGLRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMVARRSAALVLNVEFASITGLDPRGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAPAG-----EGGSAVKNLRELRWYSG 581
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JLC0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.400e-24
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 606
            VY +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:   97 VYGLRRKSDALATTKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVGFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 305
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JKW0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW0_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.010e-24
Identity = 73/211 (34.60%), Postives = 108/211 (51.18%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 606
            VY +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SPY+++ G+  P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  418 VYGLRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPYELFTGQQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 626
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5L749_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L749_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.910e-24
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPPSP-FPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 606
            VY +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:   56 VYGLRRKSDALAATKRLLADVGRYD--IGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPCRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 264
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5KS85_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS85_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.430e-24
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 606
            VY +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  331 VYGLRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFDVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 539
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.540e-24
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 606
            VY +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  376 VYGLRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFDVDFASIPSLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 584
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.360e-24
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 606
            VY +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  736 VYGLRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 944
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 8.020e-24
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 606
            VY +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  882 VYGLRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 1090
[Close]
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 8.490e-24
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 1 
Query:    1 VYFMRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 606
            VY +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  736 VYGLRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 944
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSJ7_9PHAE4.190e-4540.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH0_9PHAE1.310e-2532.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLC0_9PHAE2.400e-2434.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKW0_9PHAE3.010e-2434.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L749_9PHAE3.910e-2434.60Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KS85_9PHAE5.430e-2434.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE5.540e-2434.60Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JL48_9PHAE7.360e-2434.60Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5J4N2_9PHAE8.020e-2434.60Integrase catalytic domain-containing protein n=18... [more]
A0A6H5KBD4_9PHAE8.490e-2434.60Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig946contigA-nodosum_M_contig946:63055..64177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra86825
PFAMsRVT_2
Model size1050
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.2e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHRY@4776|Peronosporales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size1041
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870444.2279005-UTR-A-nodosum_M_contig946:63054..630631680870444.2279005-UTR-A-nodosum_M_contig946:63054..63063Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig946 63055..63063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870444.2390969-CDS-A-nodosum_M_contig946:63063..639281680870444.2390969-CDS-A-nodosum_M_contig946:63063..63928Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig946 63064..63928 +
1680870444.2520475-CDS-A-nodosum_M_contig946:64001..641771680870444.2520475-CDS-A-nodosum_M_contig946:64001..64177Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig946 64002..64177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig946.1.1prot_A-nodosum_M_contig946.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig946 63064..64177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig946.1.1

>prot_A-nodosum_M_contig946.1.1 ID=prot_A-nodosum_M_contig946.1.1|Name=mRNA_A-nodosum_M_contig946.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=347bp
MRSKSEVSKYFKQYLADHRFSGTPSPVETVRTDDAAEFKSGYFADLCRER
GIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPLSDS
LWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPPSPFPFLKPGFVKR
KRTNKLEPQAVPCFYVGPSPNRPRDSMRVIFSSGTMIDSRDVTWASIPPL
ASVLCEQGGKVPTKLQEIESVEGETNPSDGESDELQSDRQKSAGDEEDDD
DEESIFPLVVDPAPTRKAAPVGRAAQSMPLATTADAPLTLASRDRTLMPA
PYRPHQGRTPMAPCLRLCWTGGKRAGSSGQRRVQLARSKDASVEIVA
back to top

mRNA from alignment at A-nodosum_M_contig946:63055..64177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig946.1.1 ID=mRNA_A-nodosum_M_contig946.1.1|Name=mRNA_A-nodosum_M_contig946.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1123bp|location=Sequence derived from alignment at A-nodosum_M_contig946:63055..64177+ (Ascophyllum nodosum dioecious)
GTGTACTTCATGAGGAGTAAGAGTGAGGTTTCCAAATATTTCAAGCAATA
CCTTGCAGACCATCGTTTTTCTGGTACTCCTTCTCCCGTAGAAACTGTGC
GCACTGACGATGCAGCAGAGTTCAAATCAGGATATTTCGCTGATCTTTGC
AGAGAACGAGGTATTCGGCAGGAGTTCACTACAGCTAACAGCCCTCAGTT
TAATGATGTGGCAGAAAGGGGAATTGCTATGATAGAGTCAACAGAGAAGG
CAGCCTTAATTCAAGCGAAATGTATGTTCTCTGGTATGGTCATTCCGTTG
AGTGATTCACTGTGGGCGGCGCAAGCCTATTGGGCCTGTAATGCTCTTAA
TTTCACGGCAACCAAAGCTAACCCTAAGTCCAAATCTCCTTACGATATGT
GGTATGGTAGAACTCCACCGAGTCCATTCCCCTTCCTAAAACCGGGATTT
GTGAAGAGGAAACGCACTAACAAGCTCGAGCCGCAAGCGGTGCCGTGTTT
CTACGTAGGACCGTCTCCAAACCGCCCCCGTGATTCGATGCGAGTGATAT
TTTCCTCAGGCACGATGATAGACTCACGGGATGTTACGTGGGCGAGTATT
CCCCCCCTCGCTTCAGTTTTATGTGAGCAGGGAGGGAAGGTACCTACAAA
GCTCCAAGAGATTGAGTCTGTGGAAGGGGAGACCAATCCGAGTGATGGCG
AGTCCGACGAACTACAGTCCGACCGCCAAAAGAGCGCTGGAGATGAGGAA
GACGATGATGATGAGGAGTCCATCTTTCCTCTCGTCGTTGATCCCGCGCC
AACTCGGAAGGCTGCTCCGGTGGGGAGGGCCGCACAATCAATGCCATTGG
CTACAACGGCTGATGCGCCGTTGAGCATTGGCAGGCCCACAAAGGCCAAT
TTTCAACCCATCGAGGTCGAAAGTCCCGAAAGGGCCAAAAATTCGAGCAT
TGGCGTCGAGGGATCGGACGTTGATGCCAGCCCCGTATCGACCTCACCAG
GGTCGAACGCCGATGGCGCCATGCCTTCGCCTGTGCTGGACGGGAGGGAA
GCGCGCCGGCTCGAGTGGACAGCGGCGGGTCCAACTGGCACGGTCGAAGG
ACGCAAGCGTGGAGATTGTCGCC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig946:63055..64177+

>mRNA_A-nodosum_M_contig946.1.1 ID=mRNA_A-nodosum_M_contig946.1.1|Name=mRNA_A-nodosum_M_contig946.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1041bp|location=Sequence derived from alignment at A-nodosum_M_contig946:63055..64177+ (Ascophyllum nodosum dioecious)
ATGAGGAGTAAGAGTGAGGTTTCCAAATATTTCAAGCAATACCTTGCAGA
CCATCGTTTTTCTGGTACTCCTTCTCCCGTAGAAACTGTGCGCACTGACG
ATGCAGCAGAGTTCAAATCAGGATATTTCGCTGATCTTTGCAGAGAACGA
GGTATTCGGCAGGAGTTCACTACAGCTAACAGCCCTCAGTTTAATGATGT
GGCAGAAAGGGGAATTGCTATGATAGAGTCAACAGAGAAGGCAGCCTTAA
TTCAAGCGAAATGTATGTTCTCTGGTATGGTCATTCCGTTGAGTGATTCA
CTGTGGGCGGCGCAAGCCTATTGGGCCTGTAATGCTCTTAATTTCACGGC
AACCAAAGCTAACCCTAAGTCCAAATCTCCTTACGATATGTGGTATGGTA
GAACTCCACCGAGTCCATTCCCCTTCCTAAAACCGGGATTTGTGAAGAGG
AAACGCACTAACAAGCTCGAGCCGCAAGCGGTGCCGTGTTTCTACGTAGG
ACCGTCTCCAAACCGCCCCCGTGATTCGATGCGAGTGATATTTTCCTCAG
GCACGATGATAGACTCACGGGATGTTACGTGGGCGAGTATTCCCCCCCTC
GCTTCAGTTTTATGTGAGCAGGGAGGGAAGGTACCTACAAAGCTCCAAGA
GATTGAGTCTGTGGAAGGGGAGACCAATCCGAGTGATGGCGAGTCCGACG
AACTACAGTCCGACCGCCAAAAGAGCGCTGGAGATGAGGAAGACGATGAT
GATGAGGAGTCCATCTTTCCTCTCGTCGTTGATCCCGCGCCAACTCGGAA
GGCTGCTCCGGTGGGGAGGGCCGCACAATCAATGCCATTGGCTACAACGG
CTGATGCGCCGTTGACATTGGCGTCGAGGGATCGGACGTTGATGCCAGCC
CCGTATCGACCTCACCAGGGTCGAACGCCGATGGCGCCATGCCTTCGCCT
GTGCTGGACGGGAGGGAAGCGCGCCGGCTCGAGTGGACAGCGGCGGGTCC
AACTGGCACGGTCGAAGGACGCAAGCGTGGAGATTGTCGCC
back to top