prot_A-nodosum_M_contig946.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig946.1.1
Unique Nameprot_A-nodosum_M_contig946.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length347
Homology
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JSJ7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ7_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 5.250e-43
Identity = 90/226 (39.82%), Postives = 132/226 (58.41%), Query Frame = 0
Query:    1 MRSKSEVSKYFKQYLADHRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPLSDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP--SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVIFSSGTMIDSRDVTWASIPPLASVLCEQGGKVPTKLQEIESVEGE 224
            ++ KS+ ++ F++YLA  R  G P  V  VR+D+A E     F  +CR+  I+QEF  A+SP++N VAER + +I+    AA IQA  ++ G   P   SLWA    W+CNALN T+T +NP+ KSPY+MW+G  PP  + +P LKP   K KRT K EP+A  CFY+GP  N  RD  R++  +   I +R+  W S+    + L +    +  + +E  + E E
Sbjct:   72 LKHKSDAAETFERYLAGKRADGAPCDVMVVRSDNAGE-----FGKVCRKYCIKQEFIPAHSPEYNGVAERTLGLIKDAALAARIQAPTLYPGA--PNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPCLKPAVYKVKRTQKSEPKAQTCFYLGPGINANRDCGRILNDNRQAITTRNFAWQSVLAAPTALPQSLPPIAEEEEEFATGEDE 290          
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5KJH0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH0_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 7.480e-25
Identity = 74/232 (31.90%), Postives = 114/232 (49.14%), Query Frame = 0
Query:    1 MRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGI------AMIESTEKAALIQAKCMFSGMVIPLSDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPPLASVLCEQGGKVPTKLQEIESVEG 223
            +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I       M+     A ++  +      + P  D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P       +GG     L+E+    G
Sbjct:  357 LRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMVARRSAALVLNVEFASITGLDPRGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAPAG-----EGGSAVKNLRELRWYSG 581          
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JLC0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC0_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.480e-23
Identity = 71/208 (34.13%), Postives = 105/208 (50.48%), Query Frame = 0
Query:    1 MRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 199
            +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  100 LRRKSDALATTKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVGFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 305          
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JKW0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.710e-23
Identity = 71/208 (34.13%), Postives = 106/208 (50.96%), Query Frame = 0
Query:    1 MRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 199
            +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SPY+++ G+  P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  421 LRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPYELFTGQQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 626          
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5L749_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L749_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.320e-23
Identity = 71/208 (34.13%), Postives = 105/208 (50.48%), Query Frame = 0
Query:    1 MRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPPSP-FPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 199
            +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:   59 LRRKSDALAATKRLLADVGRYD--IGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPCRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 264          
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5KS85_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS85_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.080e-23
Identity = 71/208 (34.13%), Postives = 105/208 (50.48%), Query Frame = 0
Query:    1 MRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 199
            +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  334 LRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFDVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 539          
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.150e-23
Identity = 71/208 (34.13%), Postives = 105/208 (50.48%), Query Frame = 0
Query:    1 MRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 199
            +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  379 LRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFDVDFASIPSLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 584          
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JL48_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL48_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 4.180e-23
Identity = 71/208 (34.13%), Postives = 105/208 (50.48%), Query Frame = 0
Query:    1 MRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 199
            +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  739 LRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 944          
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 4.550e-23
Identity = 71/208 (34.13%), Postives = 105/208 (50.48%), Query Frame = 0
Query:    1 MRSKSEVSKYFKQYLAD-HRFSGTPSPVETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 199
            +R KS+     K+ LAD  R+      +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F      +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+Y+    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  885 LRRKSDALAATKRLLADVGRYD--LGRIECFRVDNGTEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFHVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 1090          
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Match: A0A6H5JTR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTR3_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.780e-23
Identity = 64/181 (35.36%), Postives = 94/181 (51.93%), Query Frame = 0
Query:   27 VETVRTDDAAEFKSGYFADLCRERGIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPL------SDSLWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPP-SPFPFLKPGFVKRKRTNKLEPQAVPCFYVGPSPNRPRDSMRVI-FSSGTMIDSRDVTWASIPP 199
            +E  R D+  E+  G F   C + GI  EFT    PQ+N V E  I  I     AA   A  +F+     +       D LW   A WA +ALN +ATKANP  +SP++M+ G   P    PF +PGF++  R  KL+ QA  C+YV    N P  +++V+  S+G ++ + +V+W +  P
Sbjct:  178 IECFRVDNGPEWTRGDFRRFCDDNGIGVEFTPPGVPQYNGVVESAIWRIMKAGMAARRSAGRVFNVDFASIPGLDERGDRLWMESAKWAADALNQSATKANPGRRSPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYVNGGDNHPSGTVKVLKASTGRVVYTNNVSWVTSAP 358          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig946.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSJ7_9PHAE5.250e-4339.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH0_9PHAE7.480e-2531.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLC0_9PHAE1.480e-2334.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKW0_9PHAE1.710e-2334.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L749_9PHAE2.320e-2334.13Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KS85_9PHAE3.080e-2334.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE3.150e-2334.13Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JL48_9PHAE4.180e-2334.13Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5J4N2_9PHAE4.550e-2334.13Integrase catalytic domain-containing protein n=18... [more]
A0A6H5JTR3_9PHAE4.780e-2335.36Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 345..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..280
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..159
e-value: 1.6E-19
score: 72.0
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..135
score: 11.040003
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig946contigA-nodosum_M_contig946:63064..64177 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig946.1.1mRNA_A-nodosum_M_contig946.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig946 63055..64177 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig946.1.1 ID=prot_A-nodosum_M_contig946.1.1|Name=mRNA_A-nodosum_M_contig946.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=347bp
MRSKSEVSKYFKQYLADHRFSGTPSPVETVRTDDAAEFKSGYFADLCRER
GIRQEFTTANSPQFNDVAERGIAMIESTEKAALIQAKCMFSGMVIPLSDS
LWAAQAYWACNALNFTATKANPKSKSPYDMWYGRTPPSPFPFLKPGFVKR
KRTNKLEPQAVPCFYVGPSPNRPRDSMRVIFSSGTMIDSRDVTWASIPPL
ASVLCEQGGKVPTKLQEIESVEGETNPSDGESDELQSDRQKSAGDEEDDD
DEESIFPLVVDPAPTRKAAPVGRAAQSMPLATTADAPLTLASRDRTLMPA
PYRPHQGRTPMAPCLRLCWTGGKRAGSSGQRRVQLARSKDASVEIVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf