mRNA_A-nodosum_M_contig943.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig943.4.1
Unique NamemRNA_A-nodosum_M_contig943.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig943.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig943contigA-nodosum_M_contig943:11082..12915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1834
Hectar predicted targeting categoryother localisation
Exons1
Cds size1833
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870439.639322-CDS-A-nodosum_M_contig943:11081..129141680870439.639322-CDS-A-nodosum_M_contig943:11081..12914Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig943 11082..12914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig943.4.1prot_A-nodosum_M_contig943.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig943 11082..12914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig943.4.1

>prot_A-nodosum_M_contig943.4.1 ID=prot_A-nodosum_M_contig943.4.1|Name=mRNA_A-nodosum_M_contig943.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=611bp
KPSFGVAGTKTAEYCVQHAPDGMVNINNRKCRTEGCRKTPSFGVTGTKTA
EYCAQHAPDGMVNVCKRKCRIEGCGKRPSFGVTGTKTAEYCVQHAPDGMV
NINRKCRIKSCGKRPSFGVTGTKTAEYCAQHAPDGMVDVKSRKCRTEGCG
KIPSFGVAGTKTAEYCAQHAPDGMVDVKSRKCRTEGCGKKPSFGVAGTKT
VEFCVQHAPDGMVNVFRMKCRTKGCGKCASLGVAGTKTVEYCVQHAPDGM
VNVCSRKCRTEGCEKRPSFGVAGTKTTEYCAQHVPDGMVDVCSRKCRAEG
CGMWPSFGVAGTKTAEYCVQHAPDGMVNINSRKCRTEGCRKTPSFGVTGT
KTAEYCAQHAPDGMVDVCSRKCRTEGCGKIPSFGVVGSKTMEYCAQHAPD
GMVDVKNRKCKTQGCGKIPSFGVAGTKTAEYCVQHAPGWMVNVLRMKCRT
EGCGKTPSVGVTGTKTAEFCAQHAPDGMVDVCSRKCRTEGCGKIPSFGVA
GTKTAEYCAQHAPGGVVDVYSGKCRTEGCGKTPSFGVAITKTTEFCVRRA
PDGMVNVCSRKCRVAGTKTVEYCAQHAPDICSRKCRTGGCGKKPSFEVAG
TKTAEYCALHA
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mRNA from alignment at A-nodosum_M_contig943:11082..12915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig943.4.1 ID=mRNA_A-nodosum_M_contig943.4.1|Name=mRNA_A-nodosum_M_contig943.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1834bp|location=Sequence derived from alignment at A-nodosum_M_contig943:11082..12915+ (Ascophyllum nodosum dioecious)
AAGCCGTCGTTCGGAGTGGCAGGTACGAAAACCGCGGAGTACTGTGTACA
GCACGCTCCGGACGGGATGGTCAACATCAACAACAGAAAGTGCAGAACCG
AAGGTTGCAGGAAGACGCCGTCGTTTGGGGTGACAGGTACCAAAACCGCG
GAGTACTGTGCACAGCACGCTCCGGACGGGATGGTTAACGTCTGCAAGAG
AAAGTGCAGAATCGAAGGTTGCGGGAAAAGGCCCTCGTTTGGAGTCACAG
GTACGAAGACCGCGGAGTACTGTGTACAGCACGCCCCGGACGGGATGGTC
AACATCAACAGAAAGTGCAGAATCAAAAGCTGCGGGAAAAGACCGTCGTT
TGGAGTGACAGGTACAAAAACCGCGGAGTATTGTGCACAGCACGCTCCGG
ACGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGGTTGCGGC
AAGATTCCATCATTCGGGGTGGCAGGTACGAAAACGGCGGAGTACTGTGC
ACAACACGCCCCGGACGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAA
CCGAAGGTTGCGGGAAGAAGCCGTCGTTTGGAGTGGCAGGCACAAAAACC
GTGGAGTTCTGTGTACAGCACGCCCCGGACGGGATGGTTAACGTCTTCAG
AATGAAGTGCAGAACCAAAGGTTGCGGCAAGTGCGCATCGTTGGGAGTGG
CAGGTACAAAAACGGTGGAGTACTGTGTGCAGCACGCCCCGGACGGGATG
GTTAACGTCTGCAGCAGAAAGTGCAGAACCGAAGGTTGCGAGAAGAGGCC
GTCGTTTGGAGTGGCAGGTACCAAAACCACGGAGTACTGTGCACAGCACG
TCCCGGACGGGATGGTCGACGTGTGCAGCAGAAAGTGCAGAGCCGAAGGT
TGCGGGATGTGGCCTTCGTTCGGAGTGGCAGGTACGAAAACCGCGGAGTA
CTGTGTACAGCACGCCCCGGACGGGATGGTCAACATCAACAGCAGAAAGT
GCAGAACCGAAGGTTGCAGGAAGACGCCGTCGTTTGGAGTGACAGGTACA
AAAACCGCGGAGTACTGTGCACAGCACGCTCCGGACGGGATGGTCGACGT
GTGCAGCAGAAAGTGCAGAACCGAAGGTTGCGGCAAGATTCCATCATTCG
GGGTGGTAGGTTCGAAAACGATGGAGTACTGTGCACAACACGCCCCGGAC
GGGATGGTCGACGTCAAGAACAGAAAGTGCAAAACCCAAGGCTGCGGCAA
AATTCCATCGTTCGGAGTGGCAGGTACGAAAACCGCGGAGTACTGTGTAC
AGCACGCCCCGGGCTGGATGGTCAACGTCCTCAGAATGAAGTGCAGAACC
GAAGGTTGCGGGAAGACGCCGTCGGTTGGAGTGACAGGTACAAAAACCGC
GGAGTTCTGTGCACAGCACGCTCCGGACGGGATGGTCGACGTCTGCAGCA
GAAAGTGCAGAACCGAAGGTTGTGGCAAGATTCCATCGTTCGGGGTGGCA
GGTACGAAAACCGCGGAGTACTGTGCGCAACACGCACCGGGCGGGGTGGT
CGACGTCTACAGCGGAAAGTGCAGAACCGAAGGTTGCGGCAAGACTCCAT
CGTTCGGAGTGGCAATTACGAAAACAACGGAGTTCTGTGTACGACGTGCC
CCGGACGGGATGGTCAACGTCTGTAGCAGAAAGTGCAGAGTTGCAGGTAC
AAAAACTGTGGAGTACTGTGCGCAGCACGCCCCAGACATCTGCAGCAGAA
AGTGCAGAACCGGAGGCTGCGGCAAGAAACCGTCGTTCGAAGTGGCAGGT
ACAAAAACGGCGGAGTACTGTGCTCTGCACGCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig943:11082..12915+

>mRNA_A-nodosum_M_contig943.4.1 ID=mRNA_A-nodosum_M_contig943.4.1|Name=mRNA_A-nodosum_M_contig943.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1833bp|location=Sequence derived from alignment at A-nodosum_M_contig943:11082..12915+ (Ascophyllum nodosum dioecious)
AAGCCGTCGTTCGGAGTGGCAGGTACGAAAACCGCGGAGTACTGTGTACA
GCACGCTCCGGACGGGATGGTCAACATCAACAACAGAAAGTGCAGAACCG
AAGGTTGCAGGAAGACGCCGTCGTTTGGGGTGACAGGTACCAAAACCGCG
GAGTACTGTGCACAGCACGCTCCGGACGGGATGGTTAACGTCTGCAAGAG
AAAGTGCAGAATCGAAGGTTGCGGGAAAAGGCCCTCGTTTGGAGTCACAG
GTACGAAGACCGCGGAGTACTGTGTACAGCACGCCCCGGACGGGATGGTC
AACATCAACAGAAAGTGCAGAATCAAAAGCTGCGGGAAAAGACCGTCGTT
TGGAGTGACAGGTACAAAAACCGCGGAGTATTGTGCACAGCACGCTCCGG
ACGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGGTTGCGGC
AAGATTCCATCATTCGGGGTGGCAGGTACGAAAACGGCGGAGTACTGTGC
ACAACACGCCCCGGACGGGATGGTCGACGTCAAGAGCAGAAAGTGCAGAA
CCGAAGGTTGCGGGAAGAAGCCGTCGTTTGGAGTGGCAGGCACAAAAACC
GTGGAGTTCTGTGTACAGCACGCCCCGGACGGGATGGTTAACGTCTTCAG
AATGAAGTGCAGAACCAAAGGTTGCGGCAAGTGCGCATCGTTGGGAGTGG
CAGGTACAAAAACGGTGGAGTACTGTGTGCAGCACGCCCCGGACGGGATG
GTTAACGTCTGCAGCAGAAAGTGCAGAACCGAAGGTTGCGAGAAGAGGCC
GTCGTTTGGAGTGGCAGGTACCAAAACCACGGAGTACTGTGCACAGCACG
TCCCGGACGGGATGGTCGACGTGTGCAGCAGAAAGTGCAGAGCCGAAGGT
TGCGGGATGTGGCCTTCGTTCGGAGTGGCAGGTACGAAAACCGCGGAGTA
CTGTGTACAGCACGCCCCGGACGGGATGGTCAACATCAACAGCAGAAAGT
GCAGAACCGAAGGTTGCAGGAAGACGCCGTCGTTTGGAGTGACAGGTACA
AAAACCGCGGAGTACTGTGCACAGCACGCTCCGGACGGGATGGTCGACGT
GTGCAGCAGAAAGTGCAGAACCGAAGGTTGCGGCAAGATTCCATCATTCG
GGGTGGTAGGTTCGAAAACGATGGAGTACTGTGCACAACACGCCCCGGAC
GGGATGGTCGACGTCAAGAACAGAAAGTGCAAAACCCAAGGCTGCGGCAA
AATTCCATCGTTCGGAGTGGCAGGTACGAAAACCGCGGAGTACTGTGTAC
AGCACGCCCCGGGCTGGATGGTCAACGTCCTCAGAATGAAGTGCAGAACC
GAAGGTTGCGGGAAGACGCCGTCGGTTGGAGTGACAGGTACAAAAACCGC
GGAGTTCTGTGCACAGCACGCTCCGGACGGGATGGTCGACGTCTGCAGCA
GAAAGTGCAGAACCGAAGGTTGTGGCAAGATTCCATCGTTCGGGGTGGCA
GGTACGAAAACCGCGGAGTACTGTGCGCAACACGCACCGGGCGGGGTGGT
CGACGTCTACAGCGGAAAGTGCAGAACCGAAGGTTGCGGCAAGACTCCAT
CGTTCGGAGTGGCAATTACGAAAACAACGGAGTTCTGTGTACGACGTGCC
CCGGACGGGATGGTCAACGTCTGTAGCAGAAAGTGCAGAGTTGCAGGTAC
AAAAACTGTGGAGTACTGTGCGCAGCACGCCCCAGACATCTGCAGCAGAA
AGTGCAGAACCGGAGGCTGCGGCAAGAAACCGTCGTTCGAAGTGGCAGGT
ACAAAAACGGCGGAGTACTGTGCTCTGCACGCC
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