mRNA_A-nodosum_M_contig9405.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401H607_9APHY (Transposon Ty5-1 protein n=4 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H607_9APHY) HSP 1 Score: 148 bits (373), Expect = 1.370e-37 Identity = 85/253 (33.60%), Postives = 142/253 (56.13%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
+IR +L +AA+ DWE+ Q+DV AYL ++KEE+Y+ E Y D +V +L+ + GL +G W+ + +L F++ PC + R+ +G+ I I+ V++D+LL+ + +Q +LR+ F + DLGE +G RDR T+K+ Q +Y+ ++ K + +T V + + P+T+ E + R Y ++G+LM+AA TRPD+A+ +L F NPG HW AA R L++L
Sbjct: 129 TIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGREWNIVLNRKLLDARFKRLFSDPCAYIRI-KGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPETDDECD--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 378
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.230e-37 Identity = 92/255 (36.08%), Postives = 140/255 (54.90%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA--A*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
SI+ V+++A K +L DV AY+ A +KEE Y+ E +V +++ A+ GL +G W + L ++EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+ + + E+ L FP+ DLGE +Y GC D ++G KL Q Y+ ++ +F V T+ TPAA A P ++DD P + P RE IG LMW LTRPD+A ++L K +P W A R + +L
Sbjct: 109 SIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGP-TRDDKPAVDK--------PVREAIGCLMWTK-LTRPDIALPLNKLHKIAHSPTWRKWNALVRIMSYL 352
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE) HSP 1 Score: 144 bits (363), Expect = 4.110e-37 Identity = 88/253 (34.78%), Postives = 136/253 (53.75%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
SI+ V+++A K +L DV AY+ A ++EE+Y+ E +V +++ A+ GL +G W + L +EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+ + D E+ L FP+ DLGE +Y GC D ++G KL Q Y+ ++ +F V + PAA D P+ + E + P RE IG LMW LTRPD+A ++L K +P W A R + +L
Sbjct: 26 SIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAAT-----DADLGPKRDDEPAVDK--PVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYL 269
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401GVT9_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GVT9_9APHY) HSP 1 Score: 148 bits (374), Expect = 5.690e-37 Identity = 85/253 (33.60%), Postives = 142/253 (56.13%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
+IR +L +AA+ DWE+ Q+DV AYL ++KEE+Y+ E Y D +V +L+ + GL +G W+ + +L F++ PC + R+ +G+ I I+ V++D+LL+ + +Q +LR+ F + DLGE +G RDR T+K+ Q +Y+ ++ K + +T V + + P+T+ E + R Y ++G+LM+AA TRPD+A+ +L F NPG HW AA R L++L
Sbjct: 2388 TIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGQEWNIVLNRKLLDAGFKRLFSDPCAYIRI-KGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPETDDECD--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 2637
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401GYE9_9APHY (Integrase catalytic domain-containing protein n=9 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYE9_9APHY) HSP 1 Score: 148 bits (373), Expect = 7.140e-37 Identity = 85/253 (33.60%), Postives = 142/253 (56.13%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
+IR +L +AA+ DWE+ Q+DV AYL ++KEE+Y+ E Y D +V +L+ + GL +G W+ + +L F++ PC + R+ +G+ I I+ V++D+LL+ + +Q +LR+ F + DLGE +G RDR T+K+ Q +Y+ ++ K + +T V + + P+T+ E + R Y ++G+LM+AA TRPD+A+ +L F NPG HW AA R L++L
Sbjct: 903 TIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGREWNIMLNRKLLDAGFKRLFSDPCAYIRI-KGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPETDDECD--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 1152
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401GH23_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GH23_9APHY) HSP 1 Score: 147 bits (372), Expect = 1.020e-36 Identity = 85/253 (33.60%), Postives = 141/253 (55.73%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
+IR +L +AA+ DWE+ Q+DV AYL ++KEE+Y+ E Y D +V +L+ + GL +G W+ + +L F++ PC + R+ +G+ I I+ V++D+LL+ + +Q +LR+ F + DLGE +G RDR T+K+ Q +Y+ ++ K + +T V + + P+T+ E R Y ++G+LM+AA TRPD+A+ +L F NPG HW AA R L++L
Sbjct: 1536 TIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGREWNIVLNRKLLDAGFKRLFSDPCAYIRI-KGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPETDDECN--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 1785
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR) HSP 1 Score: 143 bits (361), Expect = 1.160e-36 Identity = 91/261 (34.87%), Postives = 144/261 (55.17%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQ--VGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDA------PQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
S+R+V+++ A D EL Q+DV A+L + E++Y+ E ++ + V +L+ + GL A W F + F QV C + + + G+ I+V+Y+D++L+AS + ++ L S F + DLGEA + +G RDR SGTL L Q Y+ V ++ ++ S P A PV K D P+TE E E+MR+ PY V+G++M+A TRPD+AY+A LG++ NPG HW A + L++L
Sbjct: 128 SLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYLK-MSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCS--PLVA---PVVKGDVFGTFQCPKTEVEKEQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLRYL 382
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.230e-36 Identity = 90/253 (35.57%), Postives = 137/253 (54.15%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
SI+ V+++A K +L DV AY+ A +KEE+Y+ E +V +++ A+ GL G W + L +EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+ + + E+ L FP+ DLGE +Y GC D ++G KL Q Y+ ++ +F V T+ TPAA D P+ + E + P RE IG LMW LTRPD+A ++L K +P W A R + +L
Sbjct: 593 SIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAAT-----DADLGPKRDDEPAVDK--PVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYL 836
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401GHY6_9APHY (Transposon Ty5-1 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GHY6_9APHY) HSP 1 Score: 144 bits (362), Expect = 1.450e-36 Identity = 82/253 (32.41%), Postives = 142/253 (56.13%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
+I+ +L +AA+ DWE+ Q+DV AYL ++KEE+Y+ E Y D ++ +L+ + GL +G W+ + +L F++ PC + ++ +G+ I II V++D+LL+ + +Q +L++ F + DLGE +G RDR T+K+ Q +Y+ ++ K + +T V + + P+T+ E + R Y ++G+LM+AA TRPD+A+ +L F NPG HW AA R L++L
Sbjct: 189 TIQAILGLAAILDWEIGQMDVKGAYLNRTLKEEVYMRQPEGYSDGTYRICKLKKTLYGLKQSGQEWNIVLNRKLLNAGFKRLFSDPCAYIQI-KGDKIEIITVWVDDLLIFTNDCALMDQLKSELQNMFEVTDLGEPWKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPKTDDECD--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 438
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.800e-36 Identity = 88/253 (34.78%), Postives = 138/253 (54.55%), Query Frame = 1
Query: 1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
SI+ V+++A K +L DV AY+ A +KEE+Y+ E +V +++ A+ GL +G W + L +EQC+V PCVFR+V+ G V+ +IV+Y+D+++VA+ + + E+ L FP+ D+GE +Y GC D ++G KL Q Y+ ++ +F V T+ TPAA D P+ + E + P RE IG LMW LTRPD+A ++L K +P W A R + +L
Sbjct: 306 SIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAAD-EGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAAT-----DADLGPKRDDEPAVDK--PVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRMWNALVRIMSYL 549 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9405.1.1 >prot_A-nodosum_M_contig9405.1.1 ID=prot_A-nodosum_M_contig9405.1.1|Name=mRNA_A-nodosum_M_contig9405.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=179bp MVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQback to top mRNA from alignment at A-nodosum_M_contig9405:2323..3081- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9405.1.1 ID=mRNA_A-nodosum_M_contig9405.1.1|Name=mRNA_A-nodosum_M_contig9405.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at A-nodosum_M_contig9405:2323..3081- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9405:2323..3081- >mRNA_A-nodosum_M_contig9405.1.1 ID=mRNA_A-nodosum_M_contig9405.1.1|Name=mRNA_A-nodosum_M_contig9405.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=537bp|location=Sequence derived from alignment at A-nodosum_M_contig9405:2323..3081- (Ascophyllum nodosum dioecious)back to top |