mRNA_A-nodosum_M_contig9405.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9405.1.1
Unique NamemRNA_A-nodosum_M_contig9405.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401H607_9APHY (Transposon Ty5-1 protein n=4 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H607_9APHY)

HSP 1 Score: 148 bits (373), Expect = 1.370e-37
Identity = 85/253 (33.60%), Postives = 142/253 (56.13%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            +IR +L +AA+ DWE+ Q+DV  AYL  ++KEE+Y+   E Y D   +V +L+  + GL  +G  W+   + +L    F++    PC + R+ +G+ I I+ V++D+LL+ +      +Q   +LR+ F + DLGE    +G    RDR   T+K+ Q +Y+ ++  K  +   +T         V + + P+T+ E +  R   Y  ++G+LM+AA  TRPD+A+   +L  F  NPG  HW AA R L++L
Sbjct:  129 TIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGREWNIVLNRKLLDARFKRLFSDPCAYIRI-KGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPETDDECD--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 378          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.230e-37
Identity = 92/255 (36.08%), Postives = 140/255 (54.90%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA--A*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            SI+ V+++A  K  +L   DV  AY+ A +KEE Y+   E       +V +++ A+ GL  +G  W    +  L   ++EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+  + + E+    L   FP+ DLGE  +Y GC    D ++G  KL Q  Y+ ++  +F V  T+ TPAA  A   P ++DD P  +         P RE IG LMW   LTRPD+A   ++L K   +P    W A  R + +L
Sbjct:  109 SIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGP-TRDDKPAVDK--------PVREAIGCLMWTK-LTRPDIALPLNKLHKIAHSPTWRKWNALVRIMSYL 352          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 4.110e-37
Identity = 88/253 (34.78%), Postives = 136/253 (53.75%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            SI+ V+++A  K  +L   DV  AY+ A ++EE+Y+   E       +V +++ A+ GL  +G  W    +  L    +EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+  + D E+    L   FP+ DLGE  +Y GC    D ++G  KL Q  Y+ ++  +F V   +  PAA        D  P+ + E    +  P RE IG LMW   LTRPD+A   ++L K   +P    W A  R + +L
Sbjct:   26 SIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAAT-----DADLGPKRDDEPAVDK--PVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYL 269          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401GVT9_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GVT9_9APHY)

HSP 1 Score: 148 bits (374), Expect = 5.690e-37
Identity = 85/253 (33.60%), Postives = 142/253 (56.13%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            +IR +L +AA+ DWE+ Q+DV  AYL  ++KEE+Y+   E Y D   +V +L+  + GL  +G  W+   + +L    F++    PC + R+ +G+ I I+ V++D+LL+ +      +Q   +LR+ F + DLGE    +G    RDR   T+K+ Q +Y+ ++  K  +   +T         V + + P+T+ E +  R   Y  ++G+LM+AA  TRPD+A+   +L  F  NPG  HW AA R L++L
Sbjct: 2388 TIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGQEWNIVLNRKLLDAGFKRLFSDPCAYIRI-KGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPETDDECD--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 2637          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401GYE9_9APHY (Integrase catalytic domain-containing protein n=9 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYE9_9APHY)

HSP 1 Score: 148 bits (373), Expect = 7.140e-37
Identity = 85/253 (33.60%), Postives = 142/253 (56.13%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            +IR +L +AA+ DWE+ Q+DV  AYL  ++KEE+Y+   E Y D   +V +L+  + GL  +G  W+   + +L    F++    PC + R+ +G+ I I+ V++D+LL+ +      +Q   +LR+ F + DLGE    +G    RDR   T+K+ Q +Y+ ++  K  +   +T         V + + P+T+ E +  R   Y  ++G+LM+AA  TRPD+A+   +L  F  NPG  HW AA R L++L
Sbjct:  903 TIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGREWNIMLNRKLLDAGFKRLFSDPCAYIRI-KGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPETDDECD--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 1152          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401GH23_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GH23_9APHY)

HSP 1 Score: 147 bits (372), Expect = 1.020e-36
Identity = 85/253 (33.60%), Postives = 141/253 (55.73%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            +IR +L +AA+ DWE+ Q+DV  AYL  ++KEE+Y+   E Y D   +V +L+  + GL  +G  W+   + +L    F++    PC + R+ +G+ I I+ V++D+LL+ +      +Q   +LR+ F + DLGE    +G    RDR   T+K+ Q +Y+ ++  K  +   +T         V + + P+T+ E    R   Y  ++G+LM+AA  TRPD+A+   +L  F  NPG  HW AA R L++L
Sbjct: 1536 TIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGREWNIVLNRKLLDAGFKRLFSDPCAYIRI-KGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPETDDECN--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 1785          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR)

HSP 1 Score: 143 bits (361), Expect = 1.160e-36
Identity = 91/261 (34.87%), Postives = 144/261 (55.17%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQ--VGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDA------PQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            S+R+V+++ A  D EL Q+DV  A+L   + E++Y+   E ++    +  V +L+ +  GL  A   W   F   +    F   QV  C + + + G+   I+V+Y+D++L+AS +     ++   L S F + DLGEA + +G    RDR SGTL L Q  Y+  V  ++ ++  S  P  A   PV K D       P+TE E E+MR+ PY  V+G++M+A   TRPD+AY+A  LG++  NPG  HW A  + L++L
Sbjct:  128 SLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYLK-MSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCS--PLVA---PVVKGDVFGTFQCPKTEVEKEQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLRYL 382          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.230e-36
Identity = 90/253 (35.57%), Postives = 137/253 (54.15%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            SI+ V+++A  K  +L   DV  AY+ A +KEE+Y+   E       +V +++ A+ GL   G  W    +  L    +EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+  + + E+    L   FP+ DLGE  +Y GC    D ++G  KL Q  Y+ ++  +F V  T+ TPAA        D  P+ + E    +  P RE IG LMW   LTRPD+A   ++L K   +P    W A  R + +L
Sbjct:  593 SIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAAT-----DADLGPKRDDEPAVDK--PVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYL 836          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A401GHY6_9APHY (Transposon Ty5-1 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GHY6_9APHY)

HSP 1 Score: 144 bits (362), Expect = 1.450e-36
Identity = 82/253 (32.41%), Postives = 142/253 (56.13%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            +I+ +L +AA+ DWE+ Q+DV  AYL  ++KEE+Y+   E Y D   ++ +L+  + GL  +G  W+   + +L    F++    PC + ++ +G+ I II V++D+LL+ +      +Q   +L++ F + DLGE    +G    RDR   T+K+ Q +Y+ ++  K  +   +T         V + + P+T+ E +  R   Y  ++G+LM+AA  TRPD+A+   +L  F  NPG  HW AA R L++L
Sbjct:  189 TIQAILGLAAILDWEIGQMDVKGAYLNRTLKEEVYMRQPEGYSDGTYRICKLKKTLYGLKQSGQEWNIVLNRKLLNAGFKRLFSDPCAYIQI-KGDKIEIITVWVDDLLIFTNDCALMDQLKSELQNMFEVTDLGEPWKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLEKEEPKTDDECD--RDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYL 438          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.800e-36
Identity = 88/253 (34.78%), Postives = 138/253 (54.55%), Query Frame = 1
Query:    1 SIRMVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA*TKPVSKDDAPQTEAEMEEMRVTPYREVIGALMWAATLTRPDVAYVAHQLGKFNDNPGPVHWGAATRALQHL 759
            SI+ V+++A  K  +L   DV  AY+ A +KEE+Y+   E       +V +++ A+ GL  +G  W    +  L    +EQC+V PCVFR+V+ G V+ +IV+Y+D+++VA+  + + E+    L   FP+ D+GE  +Y GC    D ++G  KL Q  Y+ ++  +F V  T+ TPAA        D  P+ + E    +  P RE IG LMW   LTRPD+A   ++L K   +P    W A  R + +L
Sbjct:  306 SIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAAD-EGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAAT-----DADLGPKRDDEPAVDK--PVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRMWNALVRIMSYL 549          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401H607_9APHY1.370e-3733.60Transposon Ty5-1 protein n=4 Tax=Sparassis crispa ... [more]
A0A6H5K1G1_9PHAE2.230e-3736.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE4.110e-3734.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GVT9_9APHY5.690e-3733.60Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A401GYE9_9APHY7.140e-3733.60Integrase catalytic domain-containing protein n=9 ... [more]
A0A401GH23_9APHY1.020e-3633.60Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A5N6NCI1_9ASTR1.160e-3634.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE1.230e-3635.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GHY6_9APHY1.450e-3632.41Transposon Ty5-1 protein n=1 Tax=Sparassis crispa ... [more]
A0A6H5KF18_9PHAE1.800e-3634.78Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9405contigA-nodosum_M_contig9405:2323..3081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4533.OB11G23960.1
PFAMsNB-ARC,PAH
Model size759
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.86e-19
EggNOG OGsCOG2801@1|root,KOG4658@1|root,KOG0017@2759|Eukaryota,KOG4658@2759|Eukaryota,38226@33090|Viridiplantae,3GV16@35493|Streptophyta,3M2YJ@4447|Liliopsida,3IKZD@38820|Poales
Descriptiondisease resistance protein
Cds size537
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870435.9811804-UTR-A-nodosum_M_contig9405:2322..25351680870435.9811804-UTR-A-nodosum_M_contig9405:2322..2535Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9405 2323..2535 -
1680870436.0080173-UTR-A-nodosum_M_contig9405:3072..30811680870436.0080173-UTR-A-nodosum_M_contig9405:3072..3081Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9405 3073..3081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870435.9955513-CDS-A-nodosum_M_contig9405:2535..30721680870435.9955513-CDS-A-nodosum_M_contig9405:2535..3072Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9405 2536..3072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9405.1.1prot_A-nodosum_M_contig9405.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9405 2536..3072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9405.1.1

>prot_A-nodosum_M_contig9405.1.1 ID=prot_A-nodosum_M_contig9405.1.1|Name=mRNA_A-nodosum_M_contig9405.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=179bp
MVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQ
NAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVV
YLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGT
LKLDQHRYVWTVALKFTVEKTSTTPAAA*
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mRNA from alignment at A-nodosum_M_contig9405:2323..3081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9405.1.1 ID=mRNA_A-nodosum_M_contig9405.1.1|Name=mRNA_A-nodosum_M_contig9405.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at A-nodosum_M_contig9405:2323..3081- (Ascophyllum nodosum dioecious)
AGCATAAGGATGGTGCTCAGCATCGCAGCGGTGAAAGACTGGGAGCTCTG CCAACTCGACGTCGTCATGGCATACCTAGAGGCGAGCGTAAAAGAAGAAC TGTACATCGAGCTATCCGAGGACTACCGCGACTTCTGCGACCAGGTGGGC CGACTGCAAAATGCAATGCGTGGCCTTGTGCACGCTGGATTGTTATGGTC GAAAACGTTCAGCGCTGAACTCGCCGCAAGGGACTTCGAGCAATGTCAGG TCGCCCCATGCGTGTTCAGGCGAGTACTGCGCGGGAACGTCATCGTCATT ATCGTGGTATACCTCGACAACCTTCTGGTGGCGAGCAAAACGAAGCGCGA CGAGGAGCAGGCAATAGATGACCTACGATCCTGTTTCCCAATCAATGACT TAGGGGAGGCAGGATTCTATCTTGGATGCCACACCACGCGGGATCGCGAC TCGGGAACGCTGAAACTCGACCAACACCGCTACGTGTGGACCGTCGCTTT GAAATTCACCGTTGAGAAGACGAGCACCACACCGGCAGCAGCGTGAACAA AACCCGTGTCCAAGGACGATGCACCACAGACCGAGGCGGAGATGGAAGAA ATGCGTGTCACCCCATATCGGGAGGTGATAGGGGCCCTCATGTGGGCTGC GACCTTGACCCGCCCTGATGTCGCGTACGTTGCTCATCAGCTAGGAAAAT TTAACGACAACCCGGGACCAGTGCACTGGGGGGCGGCGACAAGGGCACTA CAACATCTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9405:2323..3081-

>mRNA_A-nodosum_M_contig9405.1.1 ID=mRNA_A-nodosum_M_contig9405.1.1|Name=mRNA_A-nodosum_M_contig9405.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=537bp|location=Sequence derived from alignment at A-nodosum_M_contig9405:2323..3081- (Ascophyllum nodosum dioecious)
ATGGTGCTCAGCATCGCAGCGGTGAAAGACTGGGAGCTCTGCCAACTCGA
CGTCGTCATGGCATACCTAGAGGCGAGCGTAAAAGAAGAACTGTACATCG
AGCTATCCGAGGACTACCGCGACTTCTGCGACCAGGTGGGCCGACTGCAA
AATGCAATGCGTGGCCTTGTGCACGCTGGATTGTTATGGTCGAAAACGTT
CAGCGCTGAACTCGCCGCAAGGGACTTCGAGCAATGTCAGGTCGCCCCAT
GCGTGTTCAGGCGAGTACTGCGCGGGAACGTCATCGTCATTATCGTGGTA
TACCTCGACAACCTTCTGGTGGCGAGCAAAACGAAGCGCGACGAGGAGCA
GGCAATAGATGACCTACGATCCTGTTTCCCAATCAATGACTTAGGGGAGG
CAGGATTCTATCTTGGATGCCACACCACGCGGGATCGCGACTCGGGAACG
CTGAAACTCGACCAACACCGCTACGTGTGGACCGTCGCTTTGAAATTCAC
CGTTGAGAAGACGAGCACCACACCGGCAGCAGCGTGA
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