prot_A-nodosum_M_contig9405.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig9405.1.1
Unique Nameprot_A-nodosum_M_contig9405.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length179
Homology
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.530e-27
Identity = 64/176 (36.36%), Postives = 102/176 (57.95%), Query Frame = 0
Query:    2 VLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA 177
            V+++A  K  +L   DV  AY+ A +KEE Y+   E       +V +++ A+ GL  +G  W    +  L   ++EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+  + + E+    L   FP+ DLGE  +Y GC    D ++G  KL Q  Y+ ++  +F V  T+ TPAA
Sbjct:  113 VIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAA 287          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.090e-27
Identity = 64/176 (36.36%), Postives = 101/176 (57.39%), Query Frame = 0
Query:    2 VLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA 177
            V+++A  K  +L   DV  AY+ A +KEE+Y+   E       +V +++ A+ GL   G  W    +  L    +EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+  + + E+    L   FP+ DLGE  +Y GC    D ++G  KL Q  Y+ ++  +F V  T+ TPAA
Sbjct:  597 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAA 771          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.450e-27
Identity = 62/176 (35.23%), Postives = 100/176 (56.82%), Query Frame = 0
Query:    2 VLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA 177
            V+++A  K  +L   DV  AY+ A ++EE+Y+   E       +V +++ A+ GL  +G  W    +  L    +EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+  + D E+    L   FP+ DLGE  +Y GC    D ++G  KL Q  Y+ ++  +F V   +  PAA
Sbjct:   30 VIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAA 204          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.640e-27
Identity = 62/176 (35.23%), Postives = 102/176 (57.95%), Query Frame = 0
Query:    2 VLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA 177
            V+++A  K  +L   DV  AY+ A +KEE+Y+   E       +V +++ A+ GL  +G  W    +  L    +EQC+V PCVFR+V+ G V+ +IV+Y+D+++VA+  + + E+    L   FP+ D+GE  +Y GC    D ++G  KL Q  Y+ ++  +F V  T+ TPAA
Sbjct:  310 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAAD-EGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAA 484          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.060e-26
Identity = 64/176 (36.36%), Postives = 101/176 (57.39%), Query Frame = 0
Query:    2 VLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA 177
            V+++A  K  +L   DV  AY+ A +KEE+Y+   E       +V +++ A+ GL  +G  W    +  L    +EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+  + + E+    L   FP+ DLGE  +Y GC    D ++G  KL Q  Y+  +  +F V  T+ TPAA
Sbjct:  456 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAAD-EGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIEGMLKRFDVTTTAFTPAA 630          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.090e-26
Identity = 62/176 (35.23%), Postives = 101/176 (57.39%), Query Frame = 0
Query:    2 VLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA 177
            V+++A  K  +L   DV  AY+ A ++EE+Y+   E  R    +V +++ A+ G   +G  W    +  L    +EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+  + + E+    L    P+ DLGE  +Y GC T  D ++G  KL    Y+ ++  +F V  T+ TPAA
Sbjct:  113 VIAVATEKGKKLAHWDVKQAYIHAKLEEEIYLRFPEGCRGMSGKVVKVERALYGPKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGEREELFASLNKKVPVKDLGECTWYDGCATAMDVENGIAKLSHTAYIESMLKRFDVTTTAFTPAA 287          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JMA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.170e-26
Identity = 62/177 (35.03%), Postives = 101/177 (57.06%), Query Frame = 0
Query:    2 VLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAAA 178
            V+++A+ K  +L   DV  AY+ A +KE LY+   E       +V +++ A+ GL  +G  W    +  L    +EQC+V PCVFR+V+ G V+ +IV+Y+D++LVA+  + + E+    L   FP+ DLGE  +Y G     D ++   +L Q  Y+ ++  +F V  T+ TPAAA
Sbjct:   76 VITVASEKGKKLAHWDVKQAYIHAKLKEGLYLRFPEGCGSMSGKVVKVERALYGLKQSGHEWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAAD-EGEREEFFASLNKKFPVKDLGECTWYDGYAIAMDIENDITRLSQTAYIESILKRFDVTTTAFTPAAA 251          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.070e-25
Identity = 55/160 (34.38%), Postives = 97/160 (60.62%), Query Frame = 0
Query:   17 DVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPA 176
            D+  AY  A +KEE+Y+ L +    +  +  +++ A+ GL  +G  W    +  L +  +EQC+V PC+FR+V+ G V+ +IV+Y+D++++ S T+ + E+ +  L+  FP+ DLG+  +Y GC    D ++GT KL Q  Y+ ++  +F V  T+ TPA
Sbjct:   16 DIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPA 174          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.630e-25
Identity = 62/176 (35.23%), Postives = 100/176 (56.82%), Query Frame = 0
Query:    2 VLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA 177
            V+++A  K  +L   DV  AY+ A +KEE+Y+ L E       +V +++ A+ GL  +G  W    +  L     EQC+V PCVFR+V+ G V+ +IV+Y+D +LVA+  + + E+    L   FP+  +GE  ++ GC    D ++G  KL Q  Y+ ++  +F V  T+ TPAA
Sbjct:  380 VIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAAD-EGEREELFASLNKKFPVKYMGECTWFDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAA 554          
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Match: A0A6H5JRY6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.910e-25
Identity = 63/176 (35.80%), Postives = 100/176 (56.82%), Query Frame = 0
Query:    2 VLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQNAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVVYLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGTLKLDQHRYVWTVALKFTVEKTSTTPAA 177
            V+++A  K  +L   DV  AY+ A ++EE+Y+   E       +V +++ A+ GL  +G  W    +  L    +EQC+V PCVFR V+ G V+ +IV+Y+D++LVA+  + + E+    L   FP+ND GE  +Y GC    D + G  KL Q  Y+ ++  +F V  T+ TPAA
Sbjct:  373 VIAVATEKGKKLAHWDVKQAYIHAKLREEIYLRFPEGCGSMSGKV-KVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRNVVDGEVVGLIVIYVDDILVAAD-EGEREELFASLNKKFPVNDQGECTWYDGCAVAMDVEYGITKLSQTAYIESMLKRFDVTTTAFTPAA 546          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9405.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1G1_9PHAE2.530e-2736.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE3.090e-2736.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE7.450e-2735.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE9.640e-2735.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.060e-2636.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXE8_9PHAE3.090e-2635.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMA7_9PHAE9.170e-2635.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE1.070e-2534.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE2.630e-2535.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRY6_9PHAE2.910e-2535.80Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..171
e-value: 2.5E-23
score: 83.0
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 1..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9405contigA-nodosum_M_contig9405:2536..3072 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9405.1.1mRNA_A-nodosum_M_contig9405.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig9405 2323..3081 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig9405.1.1 ID=prot_A-nodosum_M_contig9405.1.1|Name=mRNA_A-nodosum_M_contig9405.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=179bp
MVLSIAAVKDWELCQLDVVMAYLEASVKEELYIELSEDYRDFCDQVGRLQ
NAMRGLVHAGLLWSKTFSAELAARDFEQCQVAPCVFRRVLRGNVIVIIVV
YLDNLLVASKTKRDEEQAIDDLRSCFPINDLGEAGFYLGCHTTRDRDSGT
LKLDQHRYVWTVALKFTVEKTSTTPAAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2