mRNA_A-nodosum_M_contig94.60.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig94.60.1
Unique NamemRNA_A-nodosum_M_contig94.60.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.000e-20
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH------GKNDQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFTRSSSGSYLRATRLP 303
            +YN+ P PPG+E I +G+   ++VE +G++++ FH      G+ D  + L DV  VPG+ FNLYSLH  Q+TH I+ D  G H+ G  L+F  S  G YL ATRLP
Sbjct:    1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSGEVDFCVQLTDVYVVPGISFNLYSLHQTQKTHRIMLDERGVHLFGGRLSFAYSDIGCYLSATRLP 106
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.150e-16
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH---GKN---DQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFTRSSSGSYLRATRLP 303
            +YN+ P PPG+E I +G+   ++VE +G++++ FH   G++   D  + L DV  VPG+ FNL+SLH  Q+ H I+ D  G H+ G  L+F  S  G  L ATRLP
Sbjct:    1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSREVDFCVQLTDVYVVPGISFNLFSLHQTQKKHRIMLDERGVHLFGGRLSFAYSDIGCSLSATRLP 106
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.620e-14
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH-----GKNDQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFTRSSSGSYLRATRLP 303
            ++++RP P G+E I +G+   ++V+ +G +++ FH     G+ D R+ + DV  VPG+ FNL+SLH  QR   IV D +G H+    L+F  S  G  L ATRLP
Sbjct:  657 MFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLP 761
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.750e-13
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH-----GKNDQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFTRSSSGSYLRATRLP 303
            ++++RP P G+E I +G+   ++V+ +G +++ FH     G+ D  + + DV  VPG+ FNL+SLH  QR   IV D +G H+    L+F  S  G  L ATRLP
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQGGELDFCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLP 105
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5JX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX85_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.120e-12
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH-----GKNDQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFTRSSSGSYLRATRLP 303
            ++++RP P G+E I +G+   ++V+ +G +++ FH     G+ D  + + DV  VPG+ FNL+SLH  QR   IV D +G H+    + F  S  G  L ATRLP
Sbjct:    1 MFDLRPVPTGKEYIQVGNGACLRVQCLGTVNMAFHMQDQGGERDVCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGKIFFAYSDVGCSLWATRLP 105
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.210e-12
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH-----GKNDQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFTRSSSGSYLRATRLP 303
            ++++RP P G+E I +G+   ++V+ +G +++ FH     G+ D  + + DV  VPG+ FNL+SLH +QR   IV D +G H+     +F  S  G  L ATRLP
Sbjct:  355 MFDLRPVPTGKEYIQVGNGAYLRVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSLHHMQRKQRIVLDETGVHLFDGKRSFAYSDVGCSLWATRLP 459
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5JW31_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW31_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.760e-12
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH-----GKNDQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFTRSSSGSYLRATRLP 303
            +++++P P GRE I +G+   ++V+ +G+ ++ FH     G+ D  + + DV  VPG+ FNL+SLH  QR   I  D +G H+    L+F  S  G  L ATRLP
Sbjct:    1 MFDMKPIPAGREFIQVGNSAYLRVQCVGSNNMTFHMPDPSGEADFCVQISDVYVVPGITFNLFSLHHTQRRQRITLDDNGVHLFNGQLSFAYSDVGCSLWATRLP 105
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5KNR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.300e-11
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH-----GKNDQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFTRSSSGSYLRATRLP 303
            +++ RP P  +E I +G+   + V+ +G +++ FH     G+ D  + + DV  VPG+ FNL+SLH +QR   IV D +G H+    + F  S  G  L ATRLP
Sbjct:    1 MFDSRPVPTSKEYIQVGNGAYLCVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSLHHMQRKQRIVLDETGVHLFDGKIFFAYSDVGCSLWATRLP 105
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5LNB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNB5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 4.570e-6
Identity = 25/77 (32.47%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH-----GKNDQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSD 219
            +++++P P G++ I +G+   ++V+ +  +++ FH     G+ D  + + DV  VPG+ FNL+SLH  QR   I  D
Sbjct:    1 MFDMKPIPAGKQFIQVGNGAHLRVQCVEGINMAFHMPGPSGETDFCVQMSDVYVVPGITFNLFSLHHTQRRQRITLD 77
[Close]
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.820e-5
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    4 IYNVRPPPPGRETITIGDRRRIKVE*IGNMDVIFH-----GKN-DQRITLIDVAYVPGLGFNLYSLHAVQRTH 204
            +YNVR   P  + I IGD   IKV  +G++D+ FH     GK  D  +T+ +V +VPG GFNL+S+  V   H
Sbjct:  359 MYNVRHLGPDEQFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKH 431
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig94.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KCR3_9PHAE5.000e-2045.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKY9_9PHAE1.150e-1642.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE1.620e-1440.00Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JU31_9PHAE4.750e-1339.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JX85_9PHAE1.120e-1238.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK7_9PHAE1.210e-1238.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JW31_9PHAE1.760e-1238.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KNR6_9PHAE2.300e-1137.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LNB5_9PHAE4.570e-632.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQJ6_9PHAE1.820e-542.47Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig94contigA-nodosum_M_contig94:579590..580062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size473
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870432.9596353-UTR-A-nodosum_M_contig94:579589..5796271680870432.9596353-UTR-A-nodosum_M_contig94:579589..579627Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig94 579590..579627 -
1680870433.0651288-UTR-A-nodosum_M_contig94:579972..5800621680870433.0651288-UTR-A-nodosum_M_contig94:579972..580062Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig94 579973..580062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870433.0480258-CDS-A-nodosum_M_contig94:579627..5799721680870433.0480258-CDS-A-nodosum_M_contig94:579627..579972Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig94 579628..579972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig94.60.1prot_A-nodosum_M_contig94.60.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig94 579628..579972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig94.60.1

>prot_A-nodosum_M_contig94.60.1 ID=prot_A-nodosum_M_contig94.60.1|Name=mRNA_A-nodosum_M_contig94.60.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp
MDVIFHGKNDQRITLIDVAYVPGLGFNLYSLHAVQRTHLIVSDASGTHII
GANLTFTRSSSGSYLRATRLPAGTARRRQGDMRATNLLRQLGHPIPPPPQ
EPPPPQKHVRDWFA*
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mRNA from alignment at A-nodosum_M_contig94:579590..580062-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig94.60.1 ID=mRNA_A-nodosum_M_contig94.60.1|Name=mRNA_A-nodosum_M_contig94.60.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=473bp|location=Sequence derived from alignment at A-nodosum_M_contig94:579590..580062- (Ascophyllum nodosum dioecious)
AGGATATATAATGTGAGGCCCCCTCCGCCCGGTCGCGAAACAATCACGAT
CGGGGACCGTCGGAGGATAAAAGTAGAGTAGATCGGCAATATGGATGTCA
TTTTCCACGGGAAGAATGATCAGAGAATCACATTGATTGATGTCGCGTAC
GTTCCAGGTTTAGGGTTTAACCTGTACTCGCTGCACGCTGTCCAAAGAAC
ACATCTGATAGTGTCGGACGCATCTGGAACGCACATTATAGGAGCAAATC
TGACGTTCACCCGCAGTAGTAGCGGATCGTATTTGCGTGCCACCCGGCTC
CCCGCCGGTACTGCGAGACGTAGGCAAGGAGACATGCGCGCAACTAACCT
TTTAAGGCAGTTGGGACACCCCATTCCACCTCCGCCGCAGGAACCCCCCC
CCCCGCAGAAACATGTGCGCGACTGGTTTGCATAATTCAAATGTTCCGGG
AGTTGTTACAGTACTGGAACCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig94:579590..580062-

>mRNA_A-nodosum_M_contig94.60.1 ID=mRNA_A-nodosum_M_contig94.60.1|Name=mRNA_A-nodosum_M_contig94.60.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig94:579590..580062- (Ascophyllum nodosum dioecious)
ATGGATGTCATTTTCCACGGGAAGAATGATCAGAGAATCACATTGATTGA
TGTCGCGTACGTTCCAGGTTTAGGGTTTAACCTGTACTCGCTGCACGCTG
TCCAAAGAACACATCTGATAGTGTCGGACGCATCTGGAACGCACATTATA
GGAGCAAATCTGACGTTCACCCGCAGTAGTAGCGGATCGTATTTGCGTGC
CACCCGGCTCCCCGCCGGTACTGCGAGACGTAGGCAAGGAGACATGCGCG
CAACTAACCTTTTAAGGCAGTTGGGACACCCCATTCCACCTCCGCCGCAG
GAACCCCCCCCCCCGCAGAAACATGTGCGCGACTGGTTTGCATAA
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