mRNA_A-nodosum_M_contig9349.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9349.3.1
Unique NamemRNA_A-nodosum_M_contig9349.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9349.3.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 8.770e-19
Identity = 54/88 (61.36%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 PMLRVEVWRSALRVLDDLVGYVTISTAPLLARPKFTSERWHGLSSPGMET----PALSRSPTRFSSTPPSAGTILLSLGFFPSRETAS 252
            P LRVEVWRSA+RVLDDL+GY  I+ APLLARP  TSERWH LS P   +    P LS      +S P SAGTILLSLGF P+  T S
Sbjct:  730 PTLRVEVWRSAMRVLDDLLGYAAINMAPLLARPGSTSERWHVLSDPNHASTTGDPRLSGE-VAGTSPPSSAGTILLSLGFTPTGGTPS 816
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BLAST of mRNA_A-nodosum_M_contig9349.3.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.200e-18
Identity = 52/87 (59.77%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 PMLRVEVWRSALRVLDDLVGYVTISTAPLLARPKFTSERWHGLSSPGMETPALSRSPT---RFSSTPPSAGTILLSLGFFPSRETAS 252
            P LRVEVWRSA+RVLDDL+GY  I+ APLLARP  TSERWH LS P   +       T     +S P SAGTILLSLGF P+  T S
Sbjct:  746 PTLRVEVWRSAMRVLDDLLGYAAINMAPLLARPGSTSERWHVLSDPNSASTTGDPRQTGDVAGASPPSSAGTILLSLGFIPTGGTPS 832
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9349.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G411_ECTSI8.770e-1961.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L011_9PHAE1.200e-1859.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9349contigA-nodosum_M_contig9349:10031..10711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G411
PFAMsIQ,Myosin_head,RhoGAP
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K10360,ko:K19839,ko:K20644
KEGG Pathwayko04011,map04011
Hectar predicted targeting categoryother localisation
GOsGO:0001709,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0008047,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0030029,GO:0030036,GO:0030154,GO:0030234,GO:0030695,GO:0030865,GO:0030866,GO:0032502,GO:0032970,GO:0033036,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045167,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051179,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0098772,GO:0099568
Exons2
Evalue1.67e-18
EggNOG OGsKOG1453@1|root,KOG1453@2759|Eukaryota
DescriptionGTPase activator activity
Cds size249
COG categoryZ
BRITEko00000,ko00001,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870417.7877953-UTR-A-nodosum_M_contig9349:10030..100331680870417.7877953-UTR-A-nodosum_M_contig9349:10030..10033Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9349 10031..10033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870417.798989-CDS-A-nodosum_M_contig9349:10033..100891680870417.798989-CDS-A-nodosum_M_contig9349:10033..10089Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9349 10034..10089 +
1680870417.8160622-CDS-A-nodosum_M_contig9349:10518..107111680870417.8160622-CDS-A-nodosum_M_contig9349:10518..10711Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9349 10519..10711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9349.3.1prot_A-nodosum_M_contig9349.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9349 10034..10711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9349.3.1

>prot_A-nodosum_M_contig9349.3.1 ID=prot_A-nodosum_M_contig9349.3.1|Name=mRNA_A-nodosum_M_contig9349.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MLRVEVWRSALRVLDDLVGYVTISTAPLLARPKFTSERWHGLSSPGMETP
ALSRSPTRFSSTPPSAGTILLSLGFFPSRETAS
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mRNA from alignment at A-nodosum_M_contig9349:10031..10711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9349.3.1 ID=mRNA_A-nodosum_M_contig9349.3.1|Name=mRNA_A-nodosum_M_contig9349.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at A-nodosum_M_contig9349:10031..10711+ (Ascophyllum nodosum dioecious)
CCCATGCTTCGGGTGGAGGTCTGGAGGTCCGCCTTGCGCGTTCTCGACGA
TCTGGTTGGGTGAGTCTACGCGTCTTTGCCCCAAGAGAAAAAACGGCATA
GCTAGACCCAAATACTGATGTAATACTGATGTGTGTGTTTGCTTGCATTT
GCGGTCGCTTCTGCTTACGCCTGTTAAACGCCATTCGACGATTTCCGCCA
CGAAACGAAAACGCCGCTAACTACAGTACTACTCACCAGGTCTGATTCAC
TCGTAGTTTGATGTTAACGCACCAACCGCGTCAGATAGGGCCGCGACTCC
TCCAGTTACCCTCCGAAACCATCTCAGAAAGTGTAGGTGCGTTCAGATTT
TTCTTTAAATTGTATTAAATAATATACTTTATAGTATAAGAGGCGTTTCA
CGACGAGAACGGTATATGACACCATTAATATTAATGTTGCAACAATATCG
ATTACCAGTATCTCACACTTACGATTGCGTCCCCTTAGGTACGTGACAAT
CAGCACGGCACCCCTCTTAGCGCGGCCCAAGTTCACGTCGGAGCGGTGGC
ATGGTCTCTCCAGTCCCGGTATGGAAACCCCAGCCTTGTCTCGGTCCCCC
ACTAGATTCAGCTCGACACCCCCCTCGGCCGGAACGATCCTCCTCTCGTT
GGGCTTCTTCCCCTCCCGGGAGACTGCGAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9349:10031..10711+

>mRNA_A-nodosum_M_contig9349.3.1 ID=mRNA_A-nodosum_M_contig9349.3.1|Name=mRNA_A-nodosum_M_contig9349.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig9349:10031..10711+ (Ascophyllum nodosum dioecious)
ATGCTTCGGGTGGAGGTCTGGAGGTCCGCCTTGCGCGTTCTCGACGATCT
GGTTGGGTACGTGACAATCAGCACGGCACCCCTCTTAGCGCGGCCCAAGT
TCACGTCGGAGCGGTGGCATGGTCTCTCCAGTCCCGGTATGGAAACCCCA
GCCTTGTCTCGGTCCCCCACTAGATTCAGCTCGACACCCCCCTCGGCCGG
AACGATCCTCCTCTCGTTGGGCTTCTTCCCCTCCCGGGAGACTGCGAGC
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