mRNA_A-nodosum_M_contig930.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig930.7.1
Unique NamemRNA_A-nodosum_M_contig930.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 500 bits (1287), Expect = 2.570e-172
Identity = 251/392 (64.03%), Postives = 295/392 (75.26%), Query Frame = 1
Query:    4 LDDSDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEYESDETCVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLT--IANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAP-EASSDGRPGENSFYDNTISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATGTAWSSNT 1170
            LDDS + + +P  ++ KWLLT+EL +  G+VFYCRG+SI GDCDELRIQSTG TDFHEVR HGGS+YFE T+VTSWDTPNK+PQ  Y  GRSFLNCVSE  + E CVGQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D SNP+VFDTTNVYG++  SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT  IA+                             GG  AAGIFLHRSSD   V+DNVV+DMQDAG+A+LES +ADI+ N F++VK+GIR+SLG   N+V++N+F++ S  GLYTYQGSD P +  SDGRP +N F +N I N   GVKIKE D+T+IT N FTGTS LEF DA  T W  NT
Sbjct:  111 LDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVYD--------------GGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNT 488          
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 471 bits (1211), Expect = 1.200e-161
Identity = 236/398 (59.30%), Postives = 281/398 (70.60%), Query Frame = 1
Query:    1 ILDDSDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEYESDETCVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATGTAWSSN 1167
            +LD S   + +PTSVT KWLL +EL+V +G++FYC G+   GDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTPNK PQE YE GRSFLNCVSE  + ETC G  KND GECRMDII+SEMGY+G+FDSESYGLTWKVR         GFC D SNP+VF+TTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN+MHDNHQY            +AN                             GG  A GIFLHRSSD+ EVY N +++M DAG+A+LESF+ADIH N    V++GIR+SLG G N+VYDN F++CS +GLYTY GSD P+ S+ GRP  N+F +N ++N+  GVK K +DN ++T N FTGT  LEF DA  T WS N
Sbjct:   46 MLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGN 430          
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 484 bits (1246), Expect = 2.650e-161
Identity = 238/389 (61.18%), Postives = 275/389 (70.69%), Query Frame = 1
Query:    1 ILDDSDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEYESDETCVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATGTAWSSN 1167
            +LDD    +  P+ +T  WLL +EL++  G VFYC+GTS  GDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTPNK PQE YE+GRSFLNCVSE  + + C G  KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D SNPEVF+ TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA                              GG  AAGIFLHRSSD   V+DN + +MQDAG+A+LESFDA I+GN     KYGIR+SLG GNN VY N F + SQYGLYTY+GSD P+ S DGRP  N    N + +   GVKIKE D+     NTF      EF ++T T WS N
Sbjct:  473 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGN 860          
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 449 bits (1154), Expect = 2.870e-153
Identity = 223/390 (57.18%), Postives = 269/390 (68.97%), Query Frame = 1
Query:    1 ILDDSDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEY-ESDETCVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATGTAWSSN 1167
            +LD +D +  + T+ TGKWLLT++LFV  G+  YCRG  + G+C ELRI+ST  +DF E+RGHGG+LYFE T+VTSWD   + PQE Y+DGRSF+ CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRGFC+D SNP+VFD  NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA                              GG  AAGIFLHRS D  EVY N + +M DAG+A+LE+   DIH N     ++GIR+ LG  NN V+DNVF      G++TY GSD P     GRP +N FY+NTI  TETGVKIKE+DN  IT N F+GT+ +EFN+A    WS N
Sbjct:   35 VLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCA---INNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG-GRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGN 420          
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 8.020e-141
Identity = 204/328 (62.20%), Postives = 234/328 (71.34%), Query Frame = 1
Query:    1 ILDDSDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEYESDETCVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLT--IANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQ 954
            +LDD    +  P+ +T  WLL +EL++  G VFYC+GTS  GDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTPNK PQE YE GRSFLNCVSE  + + C G  KN+ GECRMDII+SE+ YLG+FDSESYG+TWK        VRGFC D SNPEVFD TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLT  IA+                             GG  A GIFLHRSSD   V+DN + +MQDAG+A+LE+FDA I+GNT    KYGIR+SLG GNN VY N F + SQ
Sbjct:   22 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVRD--------------GGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDISQ 335          
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 9.870e-140
Identity = 229/389 (58.87%), Postives = 259/389 (66.58%), Query Frame = 1
Query:    1 ILDDSDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEYESDETCVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITGNTFTGTSLLEFNDATGTAWSSN 1167
            +LDDS + + SPTSVT KWLL SEL+V  G++FYC G+   GDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTPNK PQE YE GRSFLNCVSE  + ETC G+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIA XXXXXXXXXXXX                 GG  A GIFLHRSSD+ EVY                                                        G       DAP+ S+ GRP  N+F +N I+NT  GVKIK +DN +I+ N FTGT  LEF DA  T WS N
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPDVSN-GRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTEELEFFDAQATTWSDN 333          
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 8.160e-126
Identity = 207/401 (51.62%), Postives = 261/401 (65.09%), Query Frame = 1
Query:    1 ILDDSDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEYESDET--CVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKS------NPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEA-SSDGRPGENSFYDNTISNT--ETGVKIKEADNTIITGNTFTGTSLLEFNDATGTAWSSNT 1170
            +LD+++D++    + TG WLL   L V+ GS     GT+  GD D LR+ ST S DF EVRG+GG+L+F+ T VTSWDT N   +E   DGRSF+NCV++++      C G+   ++GECRMDII S MG +GWFD+ESYGLTWKVRG C          N E+F+  NVYGDI NS+I+ MYYG YSYGHQGGVW +N M DN QYGFDPHDDSD LTI+N                             GGE A GIFLHRSSD  EV+DNVVY+MQDAG+A++ES+DA+I+ N+FTN +YGIR+SLG G N + +N+F   +QYGLYTY GSD P+  +S+GRP +N F  NTI       GV IKE D+ +   N FTG S  EF D++ T W  NT
Sbjct:  216 VLDENNDVVGG--TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT 613          
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 381 bits (978), Expect = 1.000e-121
Identity = 207/396 (52.27%), Postives = 254/396 (64.14%), Query Frame = 1
Query:    1 ILDDSDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEYESD--ETCVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSD--GRPGENSFYDNTISNTETGVKIKEADNTIITGNTFTGTSLLE---FNDATGTAWSSN 1167
            +LD +D+++    S TG WLL  ++ V  GS+    G    GD   LRIQSTGS D++E+RGHGGSL F  T VTSWDT  K    NY+  RSF+ CVSE  +D  +TC G   N  GECRMDII SEMG +G+  +ESYG++WKVRG+C++  NPEVF+ T V GDI +SDI+ MYYG YS+GH GG+WT NKMHDN QYGFDPHDDSD L IA                              GGE A GIFLHRSSD CEV+ N VYDM+DAG+AI+ES  A IH NTFTNVKYGIR+S+G   N V +N F EC QYG+YTYQG+D PEAS D  G   +N+F+ NT+   E GVKI++A+  + T N F   S  E   F D     W++N
Sbjct:  428 VLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNN 818          
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 354 bits (909), Expect = 2.250e-115
Identity = 188/360 (52.22%), Postives = 225/360 (62.50%), Query Frame = 1
Query:   37 TSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEY--ESDETCVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITGNTF 1110
            TS TG WLLT EL+V  G      G+   GD DELR+ ST  T F  +R HGGSL F  T V SWDT   SP E+  DGRS+++ +SE   + DETC G  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC DKSNPEVFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI +                            GG E +AGIFLHRSSD   V  N V+D  DAGLA+LESF+AD+  NTF N KYG+R S+G  +N   +N     ++Y  Y+Y G+D P+  S GR   N F  N+ S  E  +KIKEAD T    N F
Sbjct:   97 TSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVF 455          
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 2.030e-114
Identity = 197/393 (50.13%), Postives = 241/393 (61.32%), Query Frame = 1
Query:   10 DSDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEY--ESDETCVGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITGNTF-TGTS---LLEFNDATGTAWSSNT 1170
            DS D+  + T   G WLLT EL+V  G      GT   GD DELR+ ST  T +  +R HGGSL F  T V SWDT   SP E+  DGRS+++ VSE   + DETC G  KN  GE RMDI +SE+GYLG+ DSESYGLTWKVRGFC DKSNPE+FD  NVYG++ +SDIHH+ +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI +                            GG E +AGIFLHRSSD   V  N V+D  DAGLA+LESF+AD+  NTF N KYG+R+S+G  +N   +N+    S+Y  YTY GSD P+  S GR   N F  N+ S  E  +KIKEAD T    N F  G +   ++ F+DA  +    NT
Sbjct:   95 DSGDVSETET---GTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNT 483          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig930.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI2.570e-17264.03Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JGU8_9PHAE1.200e-16159.30MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI2.650e-16161.18Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7FRR8_ECTSI2.870e-15357.18Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE8.020e-14162.20MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FIU4_ECTSI9.870e-14058.87Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI8.160e-12651.62Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JNF5_9PHAE1.000e-12152.27MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G339_ECTSI2.250e-11552.22Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI2.030e-11450.13Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig930contigA-nodosum_M_contig930:121778..123995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LC73
PFAMsWSC
Model size1170
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.59e-161
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size1146
COG categoryU
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig930.7.1prot_A-nodosum_M_contig930.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig930 121778..123971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.607068-CDS-A-nodosum_M_contig930:121777..1218481680870411.607068-CDS-A-nodosum_M_contig930:121777..121848Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 121778..121848 -
1680870411.621025-CDS-A-nodosum_M_contig930:122252..1223961680870411.621025-CDS-A-nodosum_M_contig930:122252..122396Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 122253..122396 -
1680870411.6356323-CDS-A-nodosum_M_contig930:122620..1227851680870411.6356323-CDS-A-nodosum_M_contig930:122620..122785Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 122621..122785 -
1680870411.6472592-CDS-A-nodosum_M_contig930:122987..1232251680870411.6472592-CDS-A-nodosum_M_contig930:122987..123225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 122988..123225 -
1680870411.65811-CDS-A-nodosum_M_contig930:123443..1239711680870411.65811-CDS-A-nodosum_M_contig930:123443..123971Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 123444..123971 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.668403-UTR-A-nodosum_M_contig930:123971..1239951680870411.668403-UTR-A-nodosum_M_contig930:123971..123995Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig930 123972..123995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig930.7.1

>prot_A-nodosum_M_contig930.7.1 ID=prot_A-nodosum_M_contig930.7.1|Name=mRNA_A-nodosum_M_contig930.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=382bp
MYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIDGDCDELRIQSTGSTDFH
EVRGHGGSLYFEKTLVTSWDTPNKSPQENYEDGRSFLNCVSEYESDETCV
GQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD
TTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSD
YLTIANNEVYNNVNHGIIASKRCNNVKIYENEVYGGGEHAAGIFLHRSSD
SCEVYDNVVYDMQDAGLAILESFDADIHGNTFTNVKYGIRISLGGGNNNV
YDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIK
EADNTIITGNTFTGTSLLEFNDATGTAWSSNT
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mRNA from alignment at A-nodosum_M_contig930:121778..123995-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig930.7.1 ID=mRNA_A-nodosum_M_contig930.7.1|Name=mRNA_A-nodosum_M_contig930.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2218bp|location=Sequence derived from alignment at A-nodosum_M_contig930:121778..123995- (Ascophyllum nodosum dioecious)
ATCCTCGATGACAGCGACGACATCATGTATAGCCCCACTAGCGTGACAGG CAAGTGGCTCCTCACCTCGGAGCTGTTTGTCCTCAGCGGGTCCGTCTTTT ACTGCCGTGGCACCAGCATAGATGGCGACTGCGACGAACTGCGAATCCAG TCTACCGGCTCCACGGATTTCCATGAGGTGCGTGGTCATGGTGGCAGCCT GTACTTCGAGAAGACCCTCGTTACCTCTTGGGACACCCCGAACAAAAGCC CGCAGGAGAATTACGAGGATGGCCGCTCGTTCCTTAACTGTGTGTCGGAG TACGAATCGGACGAGACATGTGTGGGCCAGCCCAAGAATGACTACGGAGA GTGCCGCATGGACATCATCGACTCTGAGATGGGCTACCTAGGGTGGTTCG ACTCGGAGTCCTACGGGCTGACCTGGAAGGTTCGCGGGTTTTGTGCTGAC AAGAGTAACCCGGAGGTGTTCGACACAACGAACGTGTACGGGGACATCAA GAACTCCGACATTCACCACATGTACTACGGCATGTACTCTTACGGCCACC AGGTAACATTATTGGACGATCCCCGGGCTCAACGAGTGAGACTTTTACCG CTATCGTCTCAATTTACAATGTCCCCGTCCTTCTGTCCGCCGCACGTATT TCATTAAATGGTATTATTCTTAGTTCTTTAGCCAGCCGCTTGCTTCTCAA TAATGGAAATGTATGCCATTGACGCTGCTGCTGTAAATACGCATTTTCTT TCGCTTTCCCCACGTTGAAGGGTGGTGTGTGGACGAACAACAAGATGCAC GATAACCACCAGTACGGTTTCGACCCCCACGACGACTCAGACTACCTCAC CATCGCCAACAACGAGGTCTATAACAACGTGAACCACGGCATTATTGCCT CTAAGCGCTGCAACAATGTCAAGATTTACGAAAATGAGGTCTATGGCGGC GGTGAGCACGCTGCGGGTATCTTTCTCCACCGCAGCTCCGACAGTTGCGA GGTCTACGGTGAGTCCTGTATGGTATGTGTACTATACATGCAAGGACTTT TTTGGCGTTGAGCGATTGCCTCTGATCAACTTGTGAGCTACTTGTATTAT TTTATGTATAACTTTTCAACTATGGGTAGTGGTTCACCGTGCTGCTGACA TCTTCGGGTGTATTCCCTCTTTGTGCGGACTTGCCGAAACCTCCTGCTGG GCCGGCAAAGACAATGTCGTTTATGACATGCAGGACGCCGGTCTGGCCAT TCTGGAGTCTTTCGACGCCGACATCCATGGCAACACCTTTACAAACGTCA AGTACGGCATCCGTATCAGCCTGGGCGGAGGCAACAATAACGTGTACGAC AACGTGTTTGACGAATGCTCCCAATGTGAGTATCCGCCCATAGTTTGTGG TGAATGGATCGTAGTGACTCTTTACTCTTGACCCCAATTAATCACGGGAA TCGGGTGGAAATAAGATTTGACGACGCAAAGTATGAGTGACCTGCAAAAC CGTCTCTTCACCTCCTCTCCTTACTCTCTGTCGTACGTCACTGCCCATCT CCGCATCCCTACTCTATTTTAATTTCTCGACACACGGCGCGGTTTGTAGA TGGTCTGTACACCTACCAGGGTTCTGATGCTCCCGAGGCTTCTTCCGACG GCCGGCCTGGCGAGAACAGCTTCTACGACAACACAATCTCCAACACCGAG ACGGGTGTCAAGATCAAAGAAGCGGACAACACCATAATCACTGGTGAGAC GGGATCTAAACATACAAAGTATGAGCTAAGCCATCCCACGTACATCTCCC CATTTTTTTGCGCTGCCTGACAGTCTCTTGCACCGAATTCATCTTGGAAA CAAACACATGCCCCTCACTGTCTGCACGCCTGTCTGCCCAGCTAGAGCTC GAATATCTTCGTGTGTAAACGGACGGAAACAGACTTCTGTCTAGAGCTAA AACTGGGTTTCGTTGCTGGTTATTTGTGGTTATTTGTGCATTCTTCACAT GATCTAGATAATACAATGATACAGTATGCGCAGAGCTAATATGAGAACAC ATTCCCGTGTAAAGAGAGAGCATCCCTCACTCCTGCCAATGTCGCTGAAT TAGAACGTCGGGGTTGATTCCGCTCTCGCCTCGTCTTGTGTGTTCAGGTA ACACCTTCACGGGGACTTCTCTTCTCGAATTCAACGACGCTACGGGTACT GCGTGGTCGAGCAACACT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig930:121778..123995-

>mRNA_A-nodosum_M_contig930.7.1 ID=mRNA_A-nodosum_M_contig930.7.1|Name=mRNA_A-nodosum_M_contig930.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at A-nodosum_M_contig930:121778..123995- (Ascophyllum nodosum dioecious)
ATGTATAGCCCCACTAGCGTGACAGGCAAGTGGCTCCTCACCTCGGAGCT
GTTTGTCCTCAGCGGGTCCGTCTTTTACTGCCGTGGCACCAGCATAGATG
GCGACTGCGACGAACTGCGAATCCAGTCTACCGGCTCCACGGATTTCCAT
GAGGTGCGTGGTCATGGTGGCAGCCTGTACTTCGAGAAGACCCTCGTTAC
CTCTTGGGACACCCCGAACAAAAGCCCGCAGGAGAATTACGAGGATGGCC
GCTCGTTCCTTAACTGTGTGTCGGAGTACGAATCGGACGAGACATGTGTG
GGCCAGCCCAAGAATGACTACGGAGAGTGCCGCATGGACATCATCGACTC
TGAGATGGGCTACCTAGGGTGGTTCGACTCGGAGTCCTACGGGCTGACCT
GGAAGGTTCGCGGGTTTTGTGCTGACAAGAGTAACCCGGAGGTGTTCGAC
ACAACGAACGTGTACGGGGACATCAAGAACTCCGACATTCACCACATGTA
CTACGGCATGTACTCTTACGGCCACCAGGGTGGTGTGTGGACGAACAACA
AGATGCACGATAACCACCAGTACGGTTTCGACCCCCACGACGACTCAGAC
TACCTCACCATCGCCAACAACGAGGTCTATAACAACGTGAACCACGGCAT
TATTGCCTCTAAGCGCTGCAACAATGTCAAGATTTACGAAAATGAGGTCT
ATGGCGGCGGTGAGCACGCTGCGGGTATCTTTCTCCACCGCAGCTCCGAC
AGTTGCGAGGTCTACGACAATGTCGTTTATGACATGCAGGACGCCGGTCT
GGCCATTCTGGAGTCTTTCGACGCCGACATCCATGGCAACACCTTTACAA
ACGTCAAGTACGGCATCCGTATCAGCCTGGGCGGAGGCAACAATAACGTG
TACGACAACGTGTTTGACGAATGCTCCCAATATGGTCTGTACACCTACCA
GGGTTCTGATGCTCCCGAGGCTTCTTCCGACGGCCGGCCTGGCGAGAACA
GCTTCTACGACAACACAATCTCCAACACCGAGACGGGTGTCAAGATCAAA
GAAGCGGACAACACCATAATCACTGGTAACACCTTCACGGGGACTTCTCT
TCTCGAATTCAACGACGCTACGGGTACTGCGTGGTCGAGCAACACT
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