mRNA_A-nodosum_M_contig930.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig930.11.1
Unique NamemRNA_A-nodosum_M_contig930.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 529 bits (1362), Expect = 2.660e-182
Identity = 271/436 (62.16%), Postives = 321/436 (73.62%), Query Frame = 1
Query:  127 EDGGCGTMTDLYMSRVESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLT--IANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAP-EASSDGRPGENSFYDNTISNTETGVKIKEADNTIITDNTFTGTSLLEFNDATGTAWSSNTFKDANDDLCYKNFES 1425
            E  GC T+TDLY  R+ESDG + KGPI+ LDD  + + +P  ++ KWLLT+EL +  G+VFYCRG+SIGGDCDELRIQSTG TDFHEVR HGGS+YFE T+VTSWDTP K+PQ  Y  GRSFLNCVSE  + E C GQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D SNP+VFDTTNVYG++  SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT  IA+                             GG  AAGIFLHRSSD   V+DNVV+DMQDAG+A+LES +ADI++N F++VK+GIR+SLG   N+V++N+F++ S  GLYTYQGSD P +  SDGRP +N F +N I N   GVKIKE D+T+ITDN FTGTS LEF DA  T W  NT       +C KN  S
Sbjct:   83 EGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVYD--------------GGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLPQG---VCIKNIHS 500          
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 527 bits (1358), Expect = 9.840e-177
Identity = 263/440 (59.77%), Postives = 310/440 (70.45%), Query Frame = 1
Query:   73 KASIRWASGTGLNGRMYLEDGGCGTMTDLYMSR-VESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITDNTFTGTSLLEFNDATGTAWSSNTFKD 1389
            + S R+A+ +G+ GR+Y E  GC TMTDLY  R  E+DG + KGP+Y+LDDD   +  P+ +T  WLL +EL++  G VFYC+GTS GGDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTP K PQE Y++GRSFLNCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D SNPEVF+ TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA                              GG  AAGIFLHRSSD   V+DN + +MQDAG+A+LESFDA I+ N     KYGIR+SLG GNN VY N F + SQYGLYTY+GSD P+ S DGRP  N    N + +   GVKIKE D+     NTF      EF ++T T WS N   D
Sbjct:  427 RPSFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGD 864          
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 496 bits (1277), Expect = 2.770e-170
Identity = 251/428 (58.64%), Postives = 304/428 (71.03%), Query Frame = 1
Query:  127 EDGGCGTMTDLYMSR-VESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITDNTFTGTSLLEFNDATGTAWSSNT 1380
            E  GC T+TDLY  R  E+DG + KGP+Y+LD     + +PTSVT KWLL +EL+V +G++FYC G+  GGDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTP K PQE Y+ GRSFLNCVSE  + ETC+G  KND GECRMDII+SEMGY+G+FDSESYGLTWKVR         GFC D SNP+VF+TTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN+MHDNHQY            +AN                             GG  A GIFLHRSSD+ EVY N +++M DAG+A+LESF+ADIHDN    V++GIR+SLG G N+VYDN F++CS +GLYTY GSD P+ S+ GRP  N+F +N ++N+  GVK K +DN ++T+N FTGT  LEF DA  T WS N+
Sbjct:   18 ESEGCFTLTDLYNFRGTENDG-SSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNS 431          
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 474 bits (1220), Expect = 6.470e-162
Identity = 236/419 (56.32%), Postives = 290/419 (69.21%), Query Frame = 1
Query:  127 EDGGCGTMTDLYMSRVESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEY-ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITDNTFTGTSLLEFNDATGTAWSSNT 1380
            + GGC T++DLY  +   +    KGP+++LD +D +  + T+ TGKWLLT++LFV  G+  YCRG  +GG+C ELRI+ST  +DF E+RGHGG+LYFE T+VTSWD   + PQE YKDGRSF+ CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRGFC+D SNP+VFD  NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA                              GG  AAGIFLHRS D  EVY N + +M DAG+A+LE+   DIHDN     ++GIR+ LG  NN V+DNVF      G++TY GSD P     GRP +N FY+NTI  TETGVKIKE+DN  IT+N F+GT+ +EFN+A    WS N+
Sbjct:    7 DGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG-GRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNS 421          
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 432 bits (1112), Expect = 6.360e-147
Identity = 217/350 (62.00%), Postives = 250/350 (71.43%), Query Frame = 1
Query:  148 MTDLYMSR-VESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLT--IANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQ 1164
            MTDLY  R  E DG + KGP+Y+LDDD   +  P+ +T  WLL +EL++  G VFYC+GTS GGDC++LRIQSTGS DFHEVRGHGGSLYFE T+VTSWDTP K PQE Y+ GRSFLNCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWK        VRGFC D SNPEVFD TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLT  IA+                             GG  A GIFLHRSSD   V+DN + +MQDAG+A+LE+FDA I+ NT    KYGIR+SLG GNN VY N F + SQ
Sbjct:    1 MTDLYNFRGTEKDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVRD--------------GGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDISQ 335          
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 409 bits (1051), Expect = 1.670e-137
Identity = 227/390 (58.21%), Postives = 261/390 (66.92%), Query Frame = 1
Query:  211 ILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITDNTFTGTSLLEFNDATGTAWSSNT 1380
            +LDD  + + SPTSVT KWLL SEL+V  G++FYC G+  GGDCDELRIQSTG  D++EVRGHGGS+YF  T+VTSWDTP K PQE Y+ GRSFLNCVSE  + ETC+G+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIA XXXXXXXXXXXX                 GG  A GIFLHRSSD+ EVY                                                        G       DAP+ S+ GRP  N+F +N I+NT  GVKIK +DN +I++N FTGT  LEF DA  T WS N+
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPDVSN-GRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTEELEFFDAQATTWSDNS 334          
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 1.270e-135
Identity = 222/431 (51.51%), Postives = 282/431 (65.43%), Query Frame = 1
Query:  121 YLEDGGCGTMTDLYMSRVESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESDET--CEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKS------NPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEA-SSDGRPGENSFYDNTISNT--ETGVKIKEADNTIITDNTFTGTSLLEFNDATGTAWSSNT 1380
            Y E GGCGT+T +Y ++ E DG     P+Y+LD+++D++    + TG WLL   L V+ GS     GT+  GD D LR+ ST S DF EVRG+GG+L+F+ T VTSWDT     +E   DGRSF+NCV++++      C+G+   ++GECRMDII S MG +GWFD+ESYGLTWKVRG C          N E+F+  NVYGDI NS+I+ MYYG YSYGHQGGVW +N M DN QYGFDPHDDSD LTI+N                             GGE A GIFLHRSSD  EV+DNVVY+MQDAG+A++ES+DA+I+DN+FTN +YGIR+SLG G N + +N+F   +QYGLYTY GSD P+  +S+GRP +N F  NTI       GV IKE D+ +  DN FTG S  EF D++ T W  NT
Sbjct:  192 YFEGGGCGTLTQMYEAQ-EGDG-----PLYVLDENNDVVGG--TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT 613          
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 418 bits (1075), Expect = 7.510e-135
Identity = 226/441 (51.25%), Postives = 284/441 (64.40%), Query Frame = 1
Query:  112 GRMYLEDGGCGTMTDLYMSRVESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEYESD--ETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSD--GRPGENSFYDNTISNTETGVKIKEADNTIITDNTFTGTSLLE---FNDATGTAWSSNTFKDANDDLCYK 1413
            G+ Y+  GGC T+TD+Y ++    G    GP+++LD +D+++    S TG WLL  ++ V  GS+    G   GGD   LRIQSTGS D++E+RGHGGSL F  T VTSWDT +K    +YK  RSF+ CVSE  +D  +TC+G   N  GECRMDII SEMG +G+  +ESYG++WKVRG+C++  NPEVF+ T V GDI +SDI+ MYYG YS+GH GG+WT NKMHDN QYGFDPHDDSD L IA                              GGE A GIFLHRSSD CEV+ N VYDM+DAG+AI+ES  A IHDNTFTNVKYGIR+S+G   N V +N F EC QYG+YTYQG+D PEAS D  G   +N+F+ NT+   E GVKI++A+  + TDN F   S  E   F D     W++N   D   D+C K
Sbjct:  398 GKNYIRGGGCATLTDIYTAQG---GHNDDGPLFVLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPD---DICLK 827          
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 6.200e-126
Identity = 226/470 (48.09%), Postives = 281/470 (59.79%), Query Frame = 1
Query:   25 SSPTPVMTIPDECTGTKASIRWASGTGLNGRMYLED------GGCGTMTDLYMSRVESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITDNTF-TGTS---LLEFNDATGTAWSSNTFKDAND 1398
            +SP   ++ PD  +  + SIR+A   G   R+YLE       GGC T+  ++ SR        K P+Y +D D   + S T  TG WLLT EL+V  G      GT  GGD DELR+ ST  T +  +R HGGSL F  T V SWDT   SP ED  DGRS+++ VSE   + DETCEG  KN  GE RMDI +SE+GYLG+ DSESYGLTWKVRGFC DKSNPE+FD  NVYG++ +SDIHH+ +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI +                            GG E +AGIFLHRSSD   V  N V+D  DAGLA+LESF+AD+ +NTF N KYG+R+S+G  +N   +N+    S+Y  YTY GSD P+  S GR   N F  N+ S  E  +KIKEAD T   DN F  G +   ++ F+DA  +    NT  D  D
Sbjct:   32 ASPNDPISKPDCDSDIEVSIRYA---GTTKRLYLESADGETRGGCATLGQIWESRAG------KAPLYAVDPDSGDV-SETE-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGD 489          
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 1.090e-125
Identity = 213/423 (50.35%), Postives = 258/423 (60.99%), Query Frame = 1
Query:   79 SIRWASGTGLNGRMYLED-------GGCGTMTDLYMSRVESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYCRGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQEDYKDGRSFLNCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSDGRPGENSFYDNTISNTETGVKIKEADNTIITDNTF 1320
            SIR+A   G   R+YLE        GGC T+  ++ SR        KGP+Y +D D   +   TS TG WLLT EL+V  G      G+  GGD DELR+ ST  T F  +R HGGSL F  T V SWDT   SP ED  DGRS+++ +SE   + DETCEG  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC DKSNPEVFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI +                            GG E +AGIFLHRSSD   V  N V+D  DAGLA+LESF+AD+ +NTF N KYG+R S+G  +N   +N     ++Y  Y+Y G+D P+  S GR   N F  N+ S  E  +KIKEAD T   DN F
Sbjct:   45 SIRYA---GTTARLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVF 455          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig930.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI2.660e-18262.16Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D8LC73_ECTSI9.840e-17759.77Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JGU8_9PHAE2.770e-17058.64MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FRR8_ECTSI6.470e-16256.32Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE6.360e-14762.00MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FIU4_ECTSI1.670e-13758.21Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI1.270e-13551.51Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JNF5_9PHAE7.510e-13551.25MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE4_ECTSI6.200e-12648.09Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI1.090e-12550.35Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig930contigA-nodosum_M_contig930:248614..251283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LC73
PFAMsWSC
Model size1425
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.34e-177
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size1410
COG categoryU
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig930.11.1prot_A-nodosum_M_contig930.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig930 248614..251268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.7441025-CDS-A-nodosum_M_contig930:248613..2487291680870411.7441025-CDS-A-nodosum_M_contig930:248613..248729Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 248614..248729 -
1680870411.7596-CDS-A-nodosum_M_contig930:249121..2492651680870411.7596-CDS-A-nodosum_M_contig930:249121..249265Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 249122..249265 -
1680870411.77216-CDS-A-nodosum_M_contig930:249465..2496301680870411.77216-CDS-A-nodosum_M_contig930:249465..249630Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 249466..249630 -
1680870411.7843385-CDS-A-nodosum_M_contig930:249831..2500691680870411.7843385-CDS-A-nodosum_M_contig930:249831..250069Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 249832..250069 -
1680870411.7943187-CDS-A-nodosum_M_contig930:250269..2509101680870411.7943187-CDS-A-nodosum_M_contig930:250269..250910Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 250270..250910 -
1680870411.806222-CDS-A-nodosum_M_contig930:251162..2512681680870411.806222-CDS-A-nodosum_M_contig930:251162..251268Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 251163..251268 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.816246-UTR-A-nodosum_M_contig930:251268..2512831680870411.816246-UTR-A-nodosum_M_contig930:251268..251283Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig930 251269..251283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig930.11.1

>prot_A-nodosum_M_contig930.11.1 ID=prot_A-nodosum_M_contig930.11.1|Name=mRNA_A-nodosum_M_contig930.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=470bp
MPVSSPTPVMTIPDECTGTKASIRWASGTGLNGRMYLEDGGCGTMTDLYM
SRVESDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLSGSVFYC
RGTSIGGDCDELRIQSTGSTDFHEVRGHGGSLYFEKTLVTSWDTPKKSPQ
EDYKDGRSFLNCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDS
ESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQG
GVWTNNKMHDNHQYGFDPHDDSDYLTIANNEVYNNVNHGIIASKRCNNVK
IYDNEVYGGGEHAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADI
HDNTFTNVKYGIRISLGGGNNNVYDNVFDECSQYGLYTYQGSDAPEASSD
GRPGENSFYDNTISNTETGVKIKEADNTIITDNTFTGTSLLEFNDATGTA
WSSNTFKDANDDLCYKNFES
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mRNA from alignment at A-nodosum_M_contig930:248614..251283-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig930.11.1 ID=mRNA_A-nodosum_M_contig930.11.1|Name=mRNA_A-nodosum_M_contig930.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2670bp|location=Sequence derived from alignment at A-nodosum_M_contig930:248614..251283- (Ascophyllum nodosum dioecious)
CCTAGTGGCAACCCAATGCCCGTCTCCTCACCTACTCCGGTGATGACCAT CCCTGATGAATGCACTGGAACCAAGGCTAGCATCCGATGGGCGTCCGGCA CGGGGCTTAACGGTCGCATGTGTGAGTACTTTGGTAGCTTCTAGCTCATC GAGGTCTCCACCACCTTGGCTGACATTACATGATTATTTTCGATGTTTAT ATTTTTAAGTGAACTCTGGTCGACTTGGGATCTACGCAAGACTTGAGCCT CACACGACGTTGTAGGCAACTGAGGATGATCATGAACCGCAAGAGCTCAT GGGCAAAGTACAACTCAAAACATATTCACATGGTTCATGTATTACCGTGC CATGTCATACGCCGCTGTTTCAGACCTCGAGGACGGTGGCTGCGGCACCA TGACCGACCTCTACATGAGTCGTGTGGAGAGCGATGGCTGGACCCCAAAG GGCCCCATCTACATCCTCGACGACGATGATGATATCATGTACAGTCCCAC TAGCGTGACAGGCAAGTGGCTCCTCACCTCGGAGCTGTTTGTCCTCAGCG GGTCCGTCTTTTACTGCCGCGGCACCAGCATAGGTGGCGACTGCGACGAA CTGCGAATCCAGTCTACCGGCTCCACGGATTTCCACGAGGTGCGTGGTCA TGGTGGCAGTCTGTACTTCGAGAAGACCCTAGTTACCTCTTGGGACACCC CGAAAAAAAGCCCGCAGGAGGATTACAAGGATGGCCGCTCGTTCCTTAAC TGTGTGTCGGAGTACGAGTCGGACGAGACGTGTGAGGGCCAGCCCAAGAA TGACTACGGAGAGTGCCGCATGGACATCATCGACTCTGAGATGGGCTACC TAGGGTGGTTCGACTCGGAGTCCTACGGGCTGACCTGGAAGGTCCGCGGG TTTTGTGCTGACAAGAGCAACCCGGAGGTGTTCGACACAACGAACGTGTA CGGGGACATCAAGAATTCCGACATTCACCACATGTACTACGGCATGTACT CTTACGGCCACCAGGTAACATTGGTCGATCCCTAGGCTCAACGAGTGAGG CTTTTATTTAAAATGTCCCTGTCCTTCTGTCTTCCTCAACAAGAAGTTTA TTAAACGGTATTAGTTTTAGTTCGTTAGCCAGCCGCTTGAGTATCAATAA TGGAAATGTGTGCCTTTGACGCTGCTGTAATTACGCGTTTTCTTTTGCTT TGCTCACGTTAAAGGGTGGTGTGTGGACGAACAACAAGATGCACGACAAC CACCAGTACGGTTTCGACCCCCACGACGACTCGGACTACCTCACCATCGC CAACAACGAGGTCTACAACAACGTCAACCACGGCATTATTGCCTCTAAGC GCTGCAACAATGTCAAGATCTACGACAATGAGGTCTACGGCGGCGGTGAG CACGCTGCGGGCATCTTTCTCCACCGCAGCTCCGACAGCTGCGAGGTGTA CGGTGAGTCCTTTATGATATGTGTACCATACATGCAAGGACTTTTTGGCG TTGAGCGATTGCCTCTGACCAACTTGTGAGCTGCTTGTATTATTTTATGT ATATTTTTTGTACTATGGGTAGTGGTTCACCCTGCTGCTGACATCTTCGG CTGTATTCCCTCTTCGTGCGGACTTGCCGAAACCTCCCGCTGGGCCGGCA AAGACAATGTCGTTTATGACATGCAGGACGCCGGTCTGGCCATTCTGGAG TCTTTCGACGCCGACATTCACGACAACACCTTTACAAACGTCAAGTACGG CATCCGTATCAGCCTGGGCGGAGGCAACAATAACGTGTACGACAATGTGT TTGACGAATGCTCCCAATGTGAGTCCCTGCCCATAGTTTGTAGTGAATGG ATCGTAGTGACTCTTTACTCTTGACCCCAATTAATCACGGAAGACGGGTG GAAATAAGATTTGAAGCAAAATATGGGTAACCTGCAACACCCTCTCCTCG CCTCCTCGTCTGCCCATCTCCGCATTTCTACTCTATTTGCATTTCTCGAC GCACGGCGCGTTTTGCAGATGGTCTGTACACCTACCAGGGTTCTGATGCT CCCGAGGCTTCTTCCGACGGCCGGCCTGGCGAGAACAGCTTCTACGACAA CACAATCTCCAACACCGAGACGGGTGTCAAGATCAAAGAAGCGGACAACA CCATTATCACTGGTGAGACGGGATCTAAACATACAAAGTATAAGCTAAGC TATTTTACGTACATCACCCCATTGTTTTCGCGCTGCTTAACAGTCTCTTG CACTGAATTCACCTTGGAAATACACACATGCCTCCCATTGTCTGCACGCT TGTCTGCACAGCTAGAGCTCGAATATCTTCGTGTGTAAACGGACGGAAAC ATACCTCTGTCTAGAGCTAAAACTGGGTTTTGTTGCTGATTATTTTGGAC TGACATTATCTAGATAATACAGTAATACATTGTGCATAGAGCCAATATGA CAACACATCTCCATCGTTAAGAGAGAGCATCTCCCACTCCTGCCAATGTC GCTGAATTAGAACGTTGGGGTCGATTCCGCTCGCGCCTCGTCTTGCGTGT TCAGACAACACCTTCACGGGGACTTCACTTCTCGAATTCAACGACGCTAC GGGTACTGCGTGGTCGAGCAACACTTTCAAGGACGCTAACGACGATCTCT GCTACAAGAACTTCGAGAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig930:248614..251283-

>mRNA_A-nodosum_M_contig930.11.1 ID=mRNA_A-nodosum_M_contig930.11.1|Name=mRNA_A-nodosum_M_contig930.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at A-nodosum_M_contig930:248614..251283- (Ascophyllum nodosum dioecious)
ATGCCCGTCTCCTCACCTACTCCGGTGATGACCATCCCTGATGAATGCAC
TGGAACCAAGGCTAGCATCCGATGGGCGTCCGGCACGGGGCTTAACGGTC
GCATGTACCTCGAGGACGGTGGCTGCGGCACCATGACCGACCTCTACATG
AGTCGTGTGGAGAGCGATGGCTGGACCCCAAAGGGCCCCATCTACATCCT
CGACGACGATGATGATATCATGTACAGTCCCACTAGCGTGACAGGCAAGT
GGCTCCTCACCTCGGAGCTGTTTGTCCTCAGCGGGTCCGTCTTTTACTGC
CGCGGCACCAGCATAGGTGGCGACTGCGACGAACTGCGAATCCAGTCTAC
CGGCTCCACGGATTTCCACGAGGTGCGTGGTCATGGTGGCAGTCTGTACT
TCGAGAAGACCCTAGTTACCTCTTGGGACACCCCGAAAAAAAGCCCGCAG
GAGGATTACAAGGATGGCCGCTCGTTCCTTAACTGTGTGTCGGAGTACGA
GTCGGACGAGACGTGTGAGGGCCAGCCCAAGAATGACTACGGAGAGTGCC
GCATGGACATCATCGACTCTGAGATGGGCTACCTAGGGTGGTTCGACTCG
GAGTCCTACGGGCTGACCTGGAAGGTCCGCGGGTTTTGTGCTGACAAGAG
CAACCCGGAGGTGTTCGACACAACGAACGTGTACGGGGACATCAAGAATT
CCGACATTCACCACATGTACTACGGCATGTACTCTTACGGCCACCAGGGT
GGTGTGTGGACGAACAACAAGATGCACGACAACCACCAGTACGGTTTCGA
CCCCCACGACGACTCGGACTACCTCACCATCGCCAACAACGAGGTCTACA
ACAACGTCAACCACGGCATTATTGCCTCTAAGCGCTGCAACAATGTCAAG
ATCTACGACAATGAGGTCTACGGCGGCGGTGAGCACGCTGCGGGCATCTT
TCTCCACCGCAGCTCCGACAGCTGCGAGGTGTACGACAATGTCGTTTATG
ACATGCAGGACGCCGGTCTGGCCATTCTGGAGTCTTTCGACGCCGACATT
CACGACAACACCTTTACAAACGTCAAGTACGGCATCCGTATCAGCCTGGG
CGGAGGCAACAATAACGTGTACGACAATGTGTTTGACGAATGCTCCCAAT
ATGGTCTGTACACCTACCAGGGTTCTGATGCTCCCGAGGCTTCTTCCGAC
GGCCGGCCTGGCGAGAACAGCTTCTACGACAACACAATCTCCAACACCGA
GACGGGTGTCAAGATCAAAGAAGCGGACAACACCATTATCACTGACAACA
CCTTCACGGGGACTTCACTTCTCGAATTCAACGACGCTACGGGTACTGCG
TGGTCGAGCAACACTTTCAAGGACGCTAACGACGATCTCTGCTACAAGAA
CTTCGAGAGC
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