mRNA_A-nodosum_M_contig9265.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9265.9.1
Unique NamemRNA_A-nodosum_M_contig9265.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9265.9.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 4.870e-7
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 MLGACLMLGAVEEACLRWTAV-------EGMDREDASLDAKKK 108
            M+G CLMLG VEEACL+WTAV       EGM+REDAS DAK++
Sbjct:  871 MVGVCLMLGVVEEACLKWTAVQNERQLVEGMNREDASQDAKRR 913
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BLAST of mRNA_A-nodosum_M_contig9265.9.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.910e-7
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 MLGACLMLGAVEEACLRWTAV-------EGMDREDASLDAKKK 108
            M+G CLMLG VEEACL+WTAV       EGM+REDAS DAK++
Sbjct:  876 MVGVCLMLGVVEEACLKWTAVQNERQLVEGMNREDASQDAKRR 918
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9265.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW9_ECTSI4.870e-765.12USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE4.910e-765.12USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9265contigA-nodosum_M_contig9265:8829..9920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LEW9
PFAMsUCH
Model size377
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.99e-08
EggNOG OGsKOG1887@1|root,KOG1887@2759|Eukaryota
Descriptionprotein deubiquitination
Cds size375
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870397.8639154-CDS-A-nodosum_M_contig9265:8828..91221680870397.8639154-CDS-A-nodosum_M_contig9265:8828..9122Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9265 8829..9122 -
1680870397.8830752-CDS-A-nodosum_M_contig9265:9839..99201680870397.8830752-CDS-A-nodosum_M_contig9265:9839..9920Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9265 9840..9920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9265.9.1prot_A-nodosum_M_contig9265.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9265 8829..9920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9265.9.1

>prot_A-nodosum_M_contig9265.9.1 ID=prot_A-nodosum_M_contig9265.9.1|Name=mRNA_A-nodosum_M_contig9265.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=125bp
MLGACLMLGAVEEACLRWTAVEGMDREDASLDAKKKRQRERAKAKVRKSK
NASAATTATTATVEAVAAKDSPLPNGTAVGAGARPAPVGDEDGFVTTEKL
KSRRSATAQNWRARSWGAGSFNLHG
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mRNA from alignment at A-nodosum_M_contig9265:8829..9920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9265.9.1 ID=mRNA_A-nodosum_M_contig9265.9.1|Name=mRNA_A-nodosum_M_contig9265.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1092bp|location=Sequence derived from alignment at A-nodosum_M_contig9265:8829..9920- (Ascophyllum nodosum dioecious)
ATGCTTGGGGCGTGTCTGATGCTGGGCGCTGTCGAGGAGGCGTGTTTACG
TTGGACGGCGGTGGAGGGTATGGATCGGGAGGTAAGTCGAAGGTCATTCG
GTCGAGGAAGGGGAAGGGGCGCGAGGAGGGGTTGTTTATTTTTGTTTACT
TTTTAACTCAATTTCTGCTGAGGCGACCAGTCACCAATTCCATAAAACCG
TAGCGTCGCCCACCCAGCTTGTGGTCTCTTGTAAGGGGTCAACCTATCTC
TCTCCCCGGTTCACGCCTCCGACGTTGTTGTTTTTTCTATTTGTTTTCTT
GCCGTCGCTATAGGAATTCAGCTCTTGTACTTTTAGTGCACCCCACTCAA
CCGATAATGATTGGCCTTTGCTTAGTTTGGTTCGTAGGCTTTCCGCTACA
ACGGAAGCACGAATAAAGATAATCCTCCCGACTTCAAGAATTGATCTCAC
ATACAGTACTCCGCATCTACAGTCGTTATACCTTGGATCGGGCAATCCGA
CATTAGCTTTTGGCGCCTGCCTGGGGTGGCCGTGGCCGGCCATATGACGT
ACCACCACGGTGGTCCAAAATCTTGGTTCTGCTATTCATACGATAGATGT
GAAGACAACCGACTATTCGTAAGCTGGGTGCTGTAGTAGACCAGCACATA
CTATACTGTATACAGCATACAGGTATAGTGAAGGGGTCCTCGATCGATTT
ATATCTGTTTTTTTCATCTGGGCGGGTGATGGATGTGACGTCGCCCGCGA
ACTTTTTTTTTTTAACCGACCGTCCGTTGGTTGGTTGTTTTCAAACAGGA
CGCCAGTCTGGATGCTAAGAAGAAACGCCAAAGGGAGCGCGCCAAGGCAA
AAGTGCGTAAAAGCAAGAACGCCTCCGCAGCAACGACGGCGACGACGGCG
ACGGTGGAAGCAGTTGCAGCGAAGGACTCACCACTGCCGAACGGTACCGC
GGTCGGCGCTGGGGCAAGACCGGCCCCGGTTGGAGACGAGGACGGTTTCG
TTACGACCGAAAAACTTAAGTCCAGGCGATCCGCGACGGCTCAGAACTGG
CGAGCGCGATCTTGGGGTGCCGGTAGCTTCAATCTCCACGGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9265:8829..9920-

>mRNA_A-nodosum_M_contig9265.9.1 ID=mRNA_A-nodosum_M_contig9265.9.1|Name=mRNA_A-nodosum_M_contig9265.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig9265:8829..9920- (Ascophyllum nodosum dioecious)
ATGCTTGGGGCGTGTCTGATGCTGGGCGCTGTCGAGGAGGCGTGTTTACG
TTGGACGGCGGTGGAGGGTATGGATCGGGAGGACGCCAGTCTGGATGCTA
AGAAGAAACGCCAAAGGGAGCGCGCCAAGGCAAAAGTGCGTAAAAGCAAG
AACGCCTCCGCAGCAACGACGGCGACGACGGCGACGGTGGAAGCAGTTGC
AGCGAAGGACTCACCACTGCCGAACGGTACCGCGGTCGGCGCTGGGGCAA
GACCGGCCCCGGTTGGAGACGAGGACGGTTTCGTTACGACCGAAAAACTT
AAGTCCAGGCGATCCGCGACGGCTCAGAACTGGCGAGCGCGATCTTGGGG
TGCCGGTAGCTTCAATCTCCACGGT
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